Query psy10689
Match_columns 369
No_of_seqs 240 out of 715
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 16:05:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3145|consensus 100.0 2.1E-79 4.6E-84 582.1 12.1 276 25-368 83-359 (372)
2 TIGR00951 2A43 Lysosomal Cysti 100.0 2E-47 4.3E-52 357.9 19.0 219 66-365 2-220 (220)
3 KOG2913|consensus 99.9 2.7E-27 5.8E-32 226.5 12.8 243 62-368 3-249 (260)
4 KOG3145|consensus 99.7 8.2E-19 1.8E-23 168.3 -3.4 115 209-326 126-314 (372)
5 TIGR00951 2A43 Lysosomal Cysti 99.6 2.5E-15 5.5E-20 141.2 8.2 105 208-312 5-178 (220)
6 PF04193 PQ-loop: PQ loop repe 99.3 5.8E-12 1.3E-16 94.8 5.9 54 67-120 1-54 (61)
7 PF04193 PQ-loop: PQ loop repe 98.9 3.6E-09 7.7E-14 79.6 5.6 54 208-261 3-56 (61)
8 KOG2913|consensus 98.8 2.8E-08 6E-13 95.8 9.6 162 202-365 4-190 (260)
9 smart00679 CTNS Repeated motif 98.7 5.3E-09 1.1E-13 69.1 1.9 32 81-112 1-32 (32)
10 KOG3211|consensus 98.5 1.7E-06 3.7E-11 80.3 13.6 160 62-249 25-184 (230)
11 smart00679 CTNS Repeated motif 98.4 2E-07 4.3E-12 61.5 2.2 31 287-317 2-32 (32)
12 PHA02246 hypothetical protein 97.1 0.015 3.3E-07 52.3 12.9 148 65-249 2-151 (192)
13 COG4095 Uncharacterized conser 96.2 0.03 6.4E-07 45.8 7.8 54 67-120 4-57 (89)
14 PHA02246 hypothetical protein 95.1 0.12 2.5E-06 46.7 8.0 117 209-325 7-161 (192)
15 PF03083 MtN3_slv: Sugar efflu 95.0 0.1 2.2E-06 41.6 7.0 50 71-120 6-55 (87)
16 KOG3211|consensus 94.2 0.16 3.4E-06 47.9 7.0 147 211-368 35-226 (230)
17 KOG1623|consensus 93.3 0.57 1.2E-05 45.2 9.4 49 70-118 11-59 (243)
18 PF03083 MtN3_slv: Sugar efflu 92.9 0.24 5.1E-06 39.5 5.3 73 285-369 15-87 (87)
19 COG4095 Uncharacterized conser 87.3 0.91 2E-05 37.2 4.1 42 208-249 6-47 (89)
20 PF00810 ER_lumen_recept: ER l 81.2 16 0.00035 32.5 9.8 41 205-245 91-131 (147)
21 KOG1623|consensus 49.2 22 0.00048 34.4 4.0 31 222-252 24-54 (243)
22 PF07444 Ycf66_N: Ycf66 protei 31.3 61 0.0013 26.4 3.4 19 145-163 36-54 (84)
23 PF00810 ER_lumen_recept: ER l 30.1 62 0.0013 28.8 3.6 36 81-116 106-141 (147)
24 KOG2489|consensus 29.3 50 0.0011 35.3 3.2 47 56-103 457-504 (592)
No 1
>KOG3145|consensus
Probab=100.00 E-value=2.1e-79 Score=582.07 Aligned_cols=276 Identities=43% Similarity=0.789 Sum_probs=262.4
Q ss_pred ceEEeecCCceeEEEeeeccccccccceEEEEEEeecchhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchhh
Q psy10689 25 NQTLNGYNPGNAIVLIQLQPYEQLEKDVVVHVDVEKGHHWTTLSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYL 104 (369)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl 104 (369)
.+.++|.+.|+..+..+.+.+ +.+|+|+|++|.+|.++.++++++||+||++||+|||||++.||||||++|||+||+
T Consensus 83 S~~vtg~~~g~l~v~~dg~~~--~~~d~f~R~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv 160 (372)
T KOG3145|consen 83 SQLVTGAILGALNVTTDGSIT--DLEDAFARMTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFV 160 (372)
T ss_pred cEEEeehcccceEEEecCCcc--ccccceeEEEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceecccccee
Confidence 355789999999998765554 568999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhHHHHHHhhhhccccccchhhhcCCCCCCCcchhHHHHHHHHHHHHhhhheeeeeeccCCccccch-hhHHHH
Q psy10689 105 GLNMIGHSLYGVYNFVLYFSYPVQEEYYLRNPHSANPIQLNDVVFSAHNSLVTLYTVYQCYKYERGNQRLSKG-AKLLYT 183 (369)
Q Consensus 105 ~LNllG~~~y~i~n~~~~~~~~i~~qY~~r~p~~~~pV~~ndv~F~lHa~~l~~i~l~Q~~~Y~r~~qr~S~~-~~~i~~ 183 (369)
+||++||.+|++||++++|.|.+|+||..++|.+.|||..||++||+||++++.+++.||+.|||++||+|+. +.+++.
T Consensus 161 ~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~ 240 (372)
T KOG3145|consen 161 MLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILA 240 (372)
T ss_pred eehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999994 778888
Q ss_pred HHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhhhHHHHHHHHHHHHh
Q psy10689 184 VYAVWVFLSGFLALVHKIHWLDFINQCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYN 263 (369)
Q Consensus 184 ~~~~~~~i~~~~~~~~~~~wLd~l~~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~ifsilsl~~~~~~ 263 (369)
++++++.+.+.++....+.||++++.++|+|+.++++||+||+++||+||||+||||.+++||++|
T Consensus 241 i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTG-------------- 306 (372)
T KOG3145|consen 241 IFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTG-------------- 306 (372)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecc--------------
Confidence 899999999999988889999999999999999999999999999999999999998888888888
Q ss_pred cCcccccccccceeeeehhhhhhhhHHHHHHHhhcCcccccchhhHHHHHhhhHHHHHHHHHHhhcCCCccccccchhhh
Q psy10689 264 FGKCKTLDSYWDQIHLSLIKTKFTLIFWAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFDDWNSLLTDTTKL 343 (369)
Q Consensus 264 ~~q~~~y~~~w~~i~~s~i~~~~~~ipq~~~n~krKSt~G~Si~~~~Ld~~Gg~~s~lq~~~~~~~~~~~~~i~~n~~kl 343 (369)
|.+|+|||++|+.|.+||+.+.|||+|+
T Consensus 307 ----------------------------------------------------G~~slLQMilQ~~N~~sw~~f~gnp~Kf 334 (372)
T KOG3145|consen 307 ----------------------------------------------------GTASLLQMILQSSNDNSWDTFYGNPGKF 334 (372)
T ss_pred ----------------------------------------------------cHHHHHHHHHHHhccccHHHHhcCchhh
Confidence 9999999999999999999999999999
Q ss_pred hhhhHHHhHHHHHhhhheeeecCCC
Q psy10689 344 GLAAFTLMFDVLFLVQHYILYTDHD 368 (369)
Q Consensus 344 ~l~l~si~fD~if~~Qhy~lY~~~~ 368 (369)
|||++|++||++||.|||++||+++
T Consensus 335 GLg~vSi~FdiiFm~QhyVly~~~~ 359 (372)
T KOG3145|consen 335 GLGLVSIFFDIIFMMQHYVLYPRGH 359 (372)
T ss_pred hhhhHHHHHHHHHHhhheeEecccc
Confidence 9999999999999999999999653
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=100.00 E-value=2e-47 Score=357.88 Aligned_cols=219 Identities=38% Similarity=0.621 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHHHHhhhhccccccchhhhcCCCCCCCcchh
Q psy10689 66 TLSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFVLYFSYPVQEEYYLRNPHSANPIQLN 145 (369)
Q Consensus 66 ~is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i~n~~~~~~~~i~~qY~~r~p~~~~pV~~n 145 (369)
.+|.++||++++||+++++||+++||||||++|+|+||+.+|++|+++|++||+..+++|.+++||..++| .|+.|
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~----~v~~e 77 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSP----GVTQN 77 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccC----CCcHH
Confidence 47999999999999999999999999999999999999999999999999999999999999998877653 49999
Q ss_pred HHHHHHHHHHHHhhhheeeeeeccCCccccchhhHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhhhhh
Q psy10689 146 DVVFSAHNSLVTLYTVYQCYKYERGNQRLSKGAKLLYTVYAVWVFLSGFLALVHKIHWLDFINQCALIKLTITLIKYAPQ 225 (369)
Q Consensus 146 dv~F~lHa~~l~~i~l~Q~~~Y~r~~qr~S~~~~~i~~~~~~~~~i~~~~~~~~~~~wLd~l~~l~~ikl~~~~ikyiPQ 225 (369)
|+++++|+++++++++.||.+|++++||+|+++.+...................+..|+|+++.++++|+.++++||+||
T Consensus 78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQ 157 (220)
T TIGR00951 78 DVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQ 157 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999875544333322222222223456899999999999999999999999
Q ss_pred hhhhcccccccccchhHHHHHHhhhHHHHHHHHHHHHhcCcccccccccceeeeehhhhhhhhHHHHHHHhhcCcccccc
Q psy10689 226 AYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFGKCKTLDSYWDQIHLSLIKTKFTLIFWAYMNFKRKSTVGWS 305 (369)
Q Consensus 226 i~~N~rrKSt~G~Si~~~lld~~G~ifsilsl~~~~~~~~q~~~y~~~w~~i~~s~i~~~~~~ipq~~~n~krKSt~G~S 305 (369)
+++|||||||+|||+..+++|++|
T Consensus 158 i~~Ny~~ksT~glSi~~i~Ld~~G-------------------------------------------------------- 181 (220)
T TIGR00951 158 AATNYHNKSTGQLSIITVFLDFTG-------------------------------------------------------- 181 (220)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHH--------------------------------------------------------
Confidence 999999999999999999998888
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhcCCCccccccchhhhhhhhHHHhHHHHHhhhheeeec
Q psy10689 306 IGNVLLDFAGGLFSLLQMLILAYNFDDWNSLLTDTTKLGLAAFTLMFDVLFLVQHYILYT 365 (369)
Q Consensus 306 i~~~~Ld~~Gg~~s~lq~~~~~~~~~~~~~i~~n~~kl~l~l~si~fD~if~~Qhy~lY~ 365 (369)
.+|+++++.+++ ||++|++++.+|++||++++.|||+ |+
T Consensus 182 --------------~lqri~ts~~~~------gd~~~l~~~~~s~~~n~i~~~Q~~~-y~ 220 (220)
T TIGR00951 182 --------------LLQRIFQSVNET------GDPLKAGLFVVSSLFNGLFAAQVFF-YW 220 (220)
T ss_pred --------------HHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHHHHHhh-cC
Confidence 356666665433 9999999999999999999999998 53
No 3
>KOG2913|consensus
Probab=99.95 E-value=2.7e-27 Score=226.47 Aligned_cols=243 Identities=21% Similarity=0.218 Sum_probs=167.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHHHHhhhhccccccchhhhcCCCCCCC
Q psy10689 62 HHWTTLSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFVLYFSYPVQEEYYLRNPHSANP 141 (369)
Q Consensus 62 ~~~~~is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i~n~~~~~~~~i~~qY~~r~p~~~~p 141 (369)
..++.+|.++|.++++||++++.||+++|||+||++|+|.+|+..|++|+++..++.+. +.+.+.
T Consensus 3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l---------------~~~~~~ 67 (260)
T KOG2913|consen 3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFL---------------QPLGST 67 (260)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHh---------------cccchh
Confidence 45788999999999999999999999999999999999999999999999998886654 123335
Q ss_pred cchhHHHHHHHHHHHHhhhheeeeeeccCCc-cccch---hhHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q psy10689 142 IQLNDVVFSAHNSLVTLYTVYQCYKYERGNQ-RLSKG---AKLLYTVYAVWVFLSGFLALVHKIHWLDFINQCALIKLTI 217 (369)
Q Consensus 142 V~~ndv~F~lHa~~l~~i~l~Q~~~Y~r~~q-r~S~~---~~~i~~~~~~~~~i~~~~~~~~~~~wLd~l~~l~~ikl~~ 217 (369)
.....+.|. +.|++++.||.||..... +.-.. ........-+....+..........|-+.. .+....+.
T Consensus 68 ~~~~~~yy~----~~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~ 141 (260)
T KOG2913|consen 68 LKVQAVYYT----LADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVA--LGFLAIVF 141 (260)
T ss_pred HHHHHHHHH----HHHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchh--hhhHHHHH
Confidence 666788884 589999999999985433 22111 111111111111111111111111221111 11122222
Q ss_pred HhhhhhhhhhhhcccccccccchhHHHHHHhhhHHHHHHHHHHHHhcCcccccccccceeeeehhhhhhhhHHHHHHHhh
Q psy10689 218 TLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFGKCKTLDSYWDQIHLSLIKTKFTLIFWAYMNFK 297 (369)
Q Consensus 218 ~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~ifsilsl~~~~~~~~q~~~y~~~w~~i~~s~i~~~~~~ipq~~~n~k 297 (369)
..... +....-+.....| .-.|..|.++|.+++++ +.+.+|||+.+|+|
T Consensus 142 ~~~~~--~~~~~~~~~~~~~-----~~~~~lg~ilG~l~a~l------------------------y~~~rIPQI~~n~~ 190 (260)
T KOG2913|consen 142 LICGA--AYESLLRAVRVNG-----LEIDSLGAILGSLSALL------------------------YLGARIPQIILNHL 190 (260)
T ss_pred HHHHH--Hhhccccccccch-----hhhcchHHHHHHHHHHH------------------------Hcccccchhhhhhc
Confidence 22211 1111112222222 66677888877666555 57889999999999
Q ss_pred cCcccccchhhHHHHHhhhHHHHHHHHHHhhcCCCccccccchhhhhhhhHHHhHHHHHhhhheeeecCCC
Q psy10689 298 RKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFDDWNSLLTDTTKLGLAAFTLMFDVLFLVQHYILYTDHD 368 (369)
Q Consensus 298 rKSt~G~Si~~~~Ld~~Gg~~s~lq~~~~~~~~~~~~~i~~n~~kl~l~l~si~fD~if~~Qhy~lY~~~~ 368 (369)
||||+|.|..++++..+|+..+..| +++..|.||+.++.+|+.+|+.++.|.++ ||+++
T Consensus 191 ~~s~eGls~~~F~~~~~~n~~y~~s-----------~~~~~n~~w~~~~~~~~~~D~~~~~q~~~-~~~~~ 249 (260)
T KOG2913|consen 191 RKSTEGLSLLAFAFNSLGNTTYILS-----------SYLVTNLPWLVDSKGTIYLDIFIFLQFFN-YRASK 249 (260)
T ss_pred cCccchhHHHHHHHHHccccccccc-----------cccccCCcccccCCcchhHHHHHHHHHHH-hhccc
Confidence 9999999999999999999999866 78889999999999999999999999665 66543
No 4
>KOG3145|consensus
Probab=99.69 E-value=8.2e-19 Score=168.32 Aligned_cols=115 Identities=39% Similarity=0.591 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhhhH------------------------------------H
Q psy10689 209 QCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGL------------------------------------F 252 (369)
Q Consensus 209 ~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~i------------------------------------f 252 (369)
.+|++-.+.|.+++.||+++||||||++|+++.|+.|+++|-+ |
T Consensus 126 IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nDv~f 205 (372)
T KOG3145|consen 126 IVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLNDVVF 205 (372)
T ss_pred hhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhhhhh
Confidence 3566666778899999999999999999999999999999977 4
Q ss_pred HHHHHHHHHHhcCccccccccccee-----------------------------------eeehhhhhhhhHH---HHHH
Q psy10689 253 SLLQMLILAYNFGKCKTLDSYWDQI-----------------------------------HLSLIKTKFTLIF---WAYM 294 (369)
Q Consensus 253 silsl~~~~~~~~q~~~y~~~w~~i-----------------------------------~~s~i~~~~~~ip---q~~~ 294 (369)
++.+++.+.++..||..|+++|... .+++||+..+.+| |+++
T Consensus 206 slHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~m 285 (372)
T KOG3145|consen 206 SLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAYM 285 (372)
T ss_pred hHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 6667778889999999999987662 2789998888655 9999
Q ss_pred HhhcCcccccchhhHHHHHhhhHHHHHHHHHH
Q psy10689 295 NFKRKSTVGWSIGNVLLDFAGGLFSLLQMLIL 326 (369)
Q Consensus 295 n~krKSt~G~Si~~~~Ld~~Gg~~s~lq~~~~ 326 (369)
||.||||+||||++++|| -....++++-.
T Consensus 286 N~tRKSt~gwsIgnIlLD---fTGG~~slLQM 314 (372)
T KOG3145|consen 286 NFTRKSTVGWSIGNILLD---FTGGTASLLQM 314 (372)
T ss_pred cceeccccccccccEEEE---ecccHHHHHHH
Confidence 999999999999999999 66667776643
No 5
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.59 E-value=2.5e-15 Score=141.20 Aligned_cols=105 Identities=29% Similarity=0.351 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhhhHHHHH--------------------------------
Q psy10689 208 NQCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLL-------------------------------- 255 (369)
Q Consensus 208 ~~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~ifsil-------------------------------- 255 (369)
..+|++..+++.+.++||+++||||||++|+|+.++.++.+|..+...
T Consensus 5 ~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~ 84 (220)
T TIGR00951 5 QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLH 84 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHH
Confidence 357888899999999999999999999999999999999999875221
Q ss_pred HHHHHHHhcCccccccccccee----------------------------------eeehhhhhh---hhHHHHHHHhhc
Q psy10689 256 QMLILAYNFGKCKTLDSYWDQI----------------------------------HLSLIKTKF---TLIFWAYMNFKR 298 (369)
Q Consensus 256 sl~~~~~~~~q~~~y~~~w~~i----------------------------------~~s~i~~~~---~~ipq~~~n~kr 298 (369)
.++.+.....||..|++.|... .++++|... ..+||+++||||
T Consensus 85 ~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ 164 (220)
T TIGR00951 85 AILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHN 164 (220)
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 1223345567777777653321 256666554 588899999999
Q ss_pred CcccccchhhHHHH
Q psy10689 299 KSTVGWSIGNVLLD 312 (369)
Q Consensus 299 KSt~G~Si~~~~Ld 312 (369)
|||+|||+..++||
T Consensus 165 ksT~glSi~~i~Ld 178 (220)
T TIGR00951 165 KSTGQLSIITVFLD 178 (220)
T ss_pred CCCCcCCHHHHHHH
Confidence 99999999999999
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=99.28 E-value=5.8e-12 Score=94.83 Aligned_cols=54 Identities=37% Similarity=0.557 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHHHHhh
Q psy10689 67 LSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFV 120 (369)
Q Consensus 67 is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i~n~~ 120 (369)
+++++|++..++|.++++||+++|||+||++|+|+.++.++.+|.+++.+|.+.
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~ 54 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSIL 54 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999998765
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=98.87 E-value=3.6e-09 Score=79.59 Aligned_cols=54 Identities=31% Similarity=0.455 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhhhHHHHHHHHHHH
Q psy10689 208 NQCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILA 261 (369)
Q Consensus 208 ~~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~ifsilsl~~~~ 261 (369)
+.+|++..++++++++||+++||||||++|+|+.+++++..|+++.++..++..
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~ 56 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSN 56 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999998877766643
No 8
>KOG2913|consensus
Probab=98.78 E-value=2.8e-08 Score=95.85 Aligned_cols=162 Identities=14% Similarity=0.036 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhhhHHHHHHHHH-----------------HHHhc
Q psy10689 202 HWLDFINQCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLI-----------------LAYNF 264 (369)
Q Consensus 202 ~wLd~l~~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~ifsilsl~~-----------------~~~~~ 264 (369)
.|.+.-..++.+..+++++.++||+++||||||++|+|+.+++.|..|+++.+.+.++ +...+
T Consensus 4 ~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~~~~~~~~~yy~~~d~~l~ 83 (260)
T KOG2913|consen 4 INDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLGSTLKVQAVYYTLADSVLF 83 (260)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 4556667789999999999999999999999999999999999999999987663222 24568
Q ss_pred Ccccccccccc-ee---eeehhhhhhh---hHHHHHHHhhcCcccccchhhHHHHHhhhHHHHHHHHHHhhcCCCcc-cc
Q psy10689 265 GKCKTLDSYWD-QI---HLSLIKTKFT---LIFWAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFDDWN-SL 336 (369)
Q Consensus 265 ~q~~~y~~~w~-~i---~~s~i~~~~~---~ipq~~~n~krKSt~G~Si~~~~Ld~~Gg~~s~lq~~~~~~~~~~~~-~i 336 (369)
.||.+|+.-++ .- ..+......+ +.-+-.+.+.+|.++=.....-..|..+........-+. ..+--. .-
T Consensus 84 ~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~ 161 (260)
T KOG2913|consen 84 VQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLL--RAVRVNGLE 161 (260)
T ss_pred HHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccc--cccccchhh
Confidence 89999987655 21 2233333333 333566777788777777777777777666554111110 111111 33
Q ss_pred ccchhhhhhhhHHHhHHHHHhhhheeeec
Q psy10689 337 LTDTTKLGLAAFTLMFDVLFLVQHYILYT 365 (369)
Q Consensus 337 ~~n~~kl~l~l~si~fD~if~~Qhy~lY~ 365 (369)
....+++.+++..++++...+-|-..-|+
T Consensus 162 ~~~lg~ilG~l~a~ly~~~rIPQI~~n~~ 190 (260)
T KOG2913|consen 162 IDSLGAILGSLSALLYLGARIPQIILNHL 190 (260)
T ss_pred hcchHHHHHHHHHHHHcccccchhhhhhc
Confidence 34578889899999999999999444333
No 9
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.72 E-value=5.3e-09 Score=69.07 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHhhcccccccchhhhHHHhhhh
Q psy10689 81 ASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHS 112 (369)
Q Consensus 81 vSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~ 112 (369)
++++||+++|||+||++|+|+.|+++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 57899999999999999999999999999863
No 10
>KOG3211|consensus
Probab=98.54 E-value=1.7e-06 Score=80.28 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHHHHhhhhccccccchhhhcCCCCCCC
Q psy10689 62 HHWTTLSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFVLYFSYPVQEEYYLRNPHSANP 141 (369)
Q Consensus 62 ~~~~~is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i~n~~~~~~~~i~~qY~~r~p~~~~p 141 (369)
-....+|..+||.-.+.=..-..|||..=...||++|+|.-=+.|-++|++-...|++- .+-|+
T Consensus 25 cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~----------------~g~pF 88 (230)
T KOG3211|consen 25 CLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYT----------------SGYPF 88 (230)
T ss_pred chHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhh----------------cCCCc
Confidence 34567899999999999999999999999999999999999999999998865555432 23344
Q ss_pred cchhHHHHHHHHHHHHhhhheeeeeeccCCccccchhhHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q psy10689 142 IQLNDVVFSAHNSLVTLYTVYQCYKYERGNQRLSKGAKLLYTVYAVWVFLSGFLALVHKIHWLDFINQCALIKLTITLIK 221 (369)
Q Consensus 142 V~~ndv~F~lHa~~l~~i~l~Q~~~Y~r~~qr~S~~~~~i~~~~~~~~~i~~~~~~~~~~~wLd~l~~l~~ikl~~~~ik 221 (369)
-..-|-.|= ++.+.+++.+.+.|+ .|.+.... +++-..+. .............++.. -...+-+..+.
T Consensus 89 ss~gE~~fL---l~Q~vili~~if~f~--~~~~~~v~--~l~~~~~v--~~~~~sk~~p~~~~~L~---~~~~l~i~v~s 156 (230)
T KOG3211|consen 89 SSYGEYPFL---LLQAVILILCIFHFS--GQTVTVVQ--FLGYIALV--VSVLASKALPLWIITLA---QNLCLPIVVVS 156 (230)
T ss_pred hhHHHHHHH---HHHHHHHHHHHHHhc--cceeehhh--HHHHHHHH--HHHHHHhhhhHHHHHHH---HhcCchhhhHH
Confidence 444455553 244555566666665 23222211 11000000 00001100011111111 11112244567
Q ss_pred hhhhhhhhcccccccccchhHHHHHHhh
Q psy10689 222 YAPQAYMNFKRKSTVGWSIGNVLLDFAG 249 (369)
Q Consensus 222 yiPQi~~N~rrKSt~G~Si~~~lld~~G 249 (369)
++||+..|||.|+|.-.|....+|.+.|
T Consensus 157 r~~Qi~~n~~~~~tgqls~it~fLsf~g 184 (230)
T KOG3211|consen 157 RLLQIQCNYHNRSTGQLSLITVFLSFGG 184 (230)
T ss_pred HHHHHHHHhcccccchhHHHHHHHHhhh
Confidence 7788888888887777776666666666
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.37 E-value=2e-07 Score=61.48 Aligned_cols=31 Identities=42% Similarity=0.456 Sum_probs=29.0
Q ss_pred hhHHHHHHHhhcCcccccchhhHHHHHhhhH
Q psy10689 287 TLIFWAYMNFKRKSTVGWSIGNVLLDFAGGL 317 (369)
Q Consensus 287 ~~ipq~~~n~krKSt~G~Si~~~~Ld~~Gg~ 317 (369)
+++||+++|+|+||++|+|+.+++++++|++
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 5799999999999999999999999999974
No 12
>PHA02246 hypothetical protein
Probab=97.07 E-value=0.015 Score=52.27 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhH--HHhhhhHHHHHHhhhhccccccchhhhcCCCCCCCc
Q psy10689 65 TTLSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGL--NMIGHSLYGVYNFVLYFSYPVQEEYYLRNPHSANPI 142 (369)
Q Consensus 65 ~~is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~L--NllG~~~y~i~n~~~~~~~~i~~qY~~r~p~~~~pV 142 (369)
+.++..+...|...=.+.++||...=.|.|+++|.|-.|..+ -.+|... ||++.- +..+-
T Consensus 2 d~~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSf---yNlL~T--------------~~~~f- 63 (192)
T PHA02246 2 DNLSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISF---YNLLLT--------------DASVF- 63 (192)
T ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHH---HHHHhc--------------CCceE-
Confidence 346777888999999999999999999999999999655443 4455544 565521 11111
Q ss_pred chhHHHHHHHHHHHHhhhheeeeeeccCCccccchhhHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhh
Q psy10689 143 QLNDVVFSAHNSLVTLYTVYQCYKYERGNQRLSKGAKLLYTVYAVWVFLSGFLALVHKIHWLDFINQCALIKLTITLIKY 222 (369)
Q Consensus 143 ~~ndv~F~lHa~~l~~i~l~Q~~~Y~r~~qr~S~~~~~i~~~~~~~~~i~~~~~~~~~~~wLd~l~~l~~ikl~~~~iky 222 (369)
|+-.+---+ .+..+. .-...|++++ -.+.+...++. ++.+. + . |....--.+........|
T Consensus 64 qi~svg~nl---~lgivc-Llv~~~rkkd-~f~~~fiiifS---Lllfl---l--~------~~~evtQtVat~tIiLaY 124 (192)
T PHA02246 64 QIVSVGLNL---TLGIVC-LLVASYRKKD-YFSIPFIIVFS---LLLFL---L--S------DFTALTQTVATITIILAY 124 (192)
T ss_pred EEeeeehhh---hhhhhh-eeeehhhccc-cccchHHHHHH---HHHHH---H--h------hhHHHHHHHHHHHHHHHH
Confidence 111111100 011111 1112354322 22333221111 11110 0 0 111111223334446789
Q ss_pred hhhhhhhcccccccccchhHHHHHHhh
Q psy10689 223 APQAYMNFKRKSTVGWSIGNVLLDFAG 249 (369)
Q Consensus 223 iPQi~~N~rrKSt~G~Si~~~lld~~G 249 (369)
+||+..=||.|+.||.+.++.+.--.|
T Consensus 125 i~QIIqfyKTK~SEg~n~~l~lii~~G 151 (192)
T PHA02246 125 VTQITTFYKTKSAEGTNRFLFLIIGLG 151 (192)
T ss_pred HHHHHHHhhhcccCCCChhHHHHHHHH
Confidence 999999999999999999887765555
No 13
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.03 Score=45.77 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHHHHhh
Q psy10689 67 LSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFV 120 (369)
Q Consensus 67 is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i~n~~ 120 (369)
.-.++||+.-..=...|+||.+.-+|.|++.++|+.++..-..|..++.+|...
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygIL 57 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGIL 57 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 345789998888899999999999999999999999999988999999998765
No 14
>PHA02246 hypothetical protein
Probab=95.06 E-value=0.12 Score=46.70 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhhhHHHHHHHHHHHH------hcCc-------cc---cccc
Q psy10689 209 QCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAY------NFGK-------CK---TLDS 272 (369)
Q Consensus 209 ~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~ifsilsl~~~~~------~~~q-------~~---~y~~ 272 (369)
+++..-+.+..++|+||...-++.|+++|.|-+|-.+-..---+|+..++.+-. ..+| |. .|++
T Consensus 7 ~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSfyNlL~T~~~~fqi~svg~nl~lgivcLlv~~~rk 86 (192)
T PHA02246 7 YLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISFYNLLLTDASVFQIVSVGLNLTLGIVCLLVASYRK 86 (192)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeeeehhhhhhhhheeeehhhc
Confidence 455566667788999999999999999999988887766665567776554322 2222 21 2322
Q ss_pred c--cce--e------------------eeehhhhhhhhHHHHHHHhhcCcccccchhhHHHHHhhhHHHHHHHHH
Q psy10689 273 Y--WDQ--I------------------HLSLIKTKFTLIFWAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLI 325 (369)
Q Consensus 273 ~--w~~--i------------------~~s~i~~~~~~ipq~~~n~krKSt~G~Si~~~~Ld~~Gg~~s~lq~~~ 325 (369)
. ... + .++.+..+.+-+||+..-||.|+-||-|....++--+|=.+=..+|++
T Consensus 87 kd~f~~~fiiifSLllfll~~~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L 161 (192)
T PHA02246 87 KDYFSIPFIIVFSLLLFLLSDFTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL 161 (192)
T ss_pred cccccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence 1 111 0 245555677789999999999999999998877765554444455554
No 15
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=94.99 E-value=0.1 Score=41.61 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHHHHhh
Q psy10689 71 IGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFV 120 (369)
Q Consensus 71 lGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i~n~~ 120 (369)
+|-+..++=..|-.||+++-+|+||++++|+-..+..+++..++..|...
T Consensus 6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l 55 (87)
T PF03083_consen 6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh
Confidence 44555556667788999999999999999999999988888888887654
No 16
>KOG3211|consensus
Probab=94.17 E-value=0.16 Score=47.86 Aligned_cols=147 Identities=22% Similarity=0.220 Sum_probs=94.7
Q ss_pred HHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhhhHHHHH--------------------HHHH---HHHh-cCc
Q psy10689 211 ALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLL--------------------QMLI---LAYN-FGK 266 (369)
Q Consensus 211 ~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G~ifsil--------------------sl~~---~~~~-~~q 266 (369)
|+.-..-++.--+|||...-..||.+|+|...+.|...|...++. +..+ ...- -+|
T Consensus 35 g~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~ 114 (230)
T KOG3211|consen 35 GLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQ 114 (230)
T ss_pred hHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333334444444699999999999999999999999999873221 1110 0000 011
Q ss_pred ------ccccc----ccccee-----------eeehhhhhhhhHHHHHHHhhcCcccccchhhHHHHHhhhHHHHHHHHH
Q psy10689 267 ------CKTLD----SYWDQI-----------HLSLIKTKFTLIFWAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLI 325 (369)
Q Consensus 267 ------~~~y~----~~w~~i-----------~~s~i~~~~~~ipq~~~n~krKSt~G~Si~~~~Ld~~Gg~~s~lq~~~ 325 (369)
...|- ..|.-. ....-....++++|++.|||.|+|--.|....+|.+.|..+-+.--+.
T Consensus 115 ~~~~v~~l~~~~~v~~~~~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq 194 (230)
T KOG3211|consen 115 TVTVVQFLGYIALVVSVLASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQ 194 (230)
T ss_pred eeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 00000 011000 112222457899999999999999999999999999888776533332
Q ss_pred HhhcCCCccccccchhhhhhhhHHHhHHHHHhhhheeeecCCC
Q psy10689 326 LAYNFDDWNSLLTDTTKLGLAAFTLMFDVLFLVQHYILYTDHD 368 (369)
Q Consensus 326 ~~~~~~~~~~i~~n~~kl~l~l~si~fD~if~~Qhy~lY~~~~ 368 (369)
.. +|+.-++.-..+++.+.+++.| ..+||++.
T Consensus 195 ---~t-------~d~~mll~~v~s~~~Ng~i~aq-~l~Y~s~~ 226 (230)
T KOG3211|consen 195 ---ET-------GDFLMLLRFVISLALNGLITAQ-VLRYWSTA 226 (230)
T ss_pred ---hc-------CChhhHHHHHHHHHHhHHHHHH-HHHHHhcC
Confidence 22 3455556667788999999999 55698753
No 17
>KOG1623|consensus
Probab=93.30 E-value=0.57 Score=45.18 Aligned_cols=49 Identities=22% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHHHH
Q psy10689 70 IIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYN 118 (369)
Q Consensus 70 vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i~n 118 (369)
++|-+..++=..+=.|-.+.=+||||+||.|....+.-+++..++.-|.
T Consensus 11 i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG 59 (243)
T KOG1623|consen 11 ILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG 59 (243)
T ss_pred HHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh
Confidence 3333444444455668888889999999999988888888777665543
No 18
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=92.91 E-value=0.24 Score=39.54 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=49.8
Q ss_pred hhhhHHHHHHHhhcCcccccchhhHHHHHhhhHHHHHHHHHHhhcCCCccccccchhhhhhhhHHHhHHHHHhhhheeee
Q psy10689 285 KFTLIFWAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFDDWNSLLTDTTKLGLAAFTLMFDVLFLVQHYILY 364 (369)
Q Consensus 285 ~~~~ipq~~~n~krKSt~G~Si~~~~Ld~~Gg~~s~lq~~~~~~~~~~~~~i~~n~~kl~l~l~si~fD~if~~Qhy~lY 364 (369)
..+-+|++.+..|+||+++.|......-+.++.+-+. .+...+||-.+..|. +.+++..+.+.- |..|
T Consensus 15 ~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~----YG~l~~d~~i~~~N~-------~g~~~~~~~~~~-~~~y 82 (87)
T PF03083_consen 15 FLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLI----YGILINDWPIIVPNV-------FGLVLSIIYLVV-YYIY 82 (87)
T ss_pred HHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhh----hhhhcCCeeEEeeHH-------HHHHHHHHHHhh-eEEe
Confidence 3445789999999999999999999888777766532 222335665555554 445555566666 6668
Q ss_pred cCCCC
Q psy10689 365 TDHDD 369 (369)
Q Consensus 365 ~~~~~ 369 (369)
+++++
T Consensus 83 ~~~~~ 87 (87)
T PF03083_consen 83 PSKKK 87 (87)
T ss_pred CCCCC
Confidence 77653
No 19
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=87.26 E-value=0.91 Score=37.21 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHHHHhh
Q psy10689 208 NQCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAG 249 (369)
Q Consensus 208 ~~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~lld~~G 249 (369)
...|++...++...++||..+-+|.|+|.+.|+.++..-..|
T Consensus 6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia 47 (89)
T COG4095 6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIA 47 (89)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH
Confidence 346788888899999999999999999999999988887777
No 20
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=81.24 E-value=16 Score=32.52 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccccccccchhHHHH
Q psy10689 205 DFINQCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLL 245 (369)
Q Consensus 205 d~l~~l~~ikl~~~~ikyiPQi~~N~rrKSt~G~Si~~~ll 245 (369)
.+.+.++..+..+..++.+||..+-.|++.+|.+..+++..
T Consensus 91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~ 131 (147)
T PF00810_consen 91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFA 131 (147)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHH
Confidence 45667888899999999999999999999999888776654
No 21
>KOG1623|consensus
Probab=49.24 E-value=22 Score=34.42 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=27.4
Q ss_pred hhhhhhhhcccccccccchhHHHHHHhhhHH
Q psy10689 222 YAPQAYMNFKRKSTVGWSIGNVLLDFAGGLF 252 (369)
Q Consensus 222 yiPQi~~N~rrKSt~G~Si~~~lld~~G~if 252 (369)
=+|-.+.-+||||+||+|....++.+++..+
T Consensus 24 pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~l 54 (243)
T KOG1623|consen 24 PVPTFRRIRKKKSVEGFSSLPFLMGLLSCSL 54 (243)
T ss_pred CchhHHHhhcccCcCCCCCcCcHHHHHHHHH
Confidence 3477888899999999999999999999876
No 22
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=31.34 E-value=61 Score=26.42 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhhhhee
Q psy10689 145 NDVVFSAHNSLVTLYTVYQ 163 (369)
Q Consensus 145 ndv~F~lHa~~l~~i~l~Q 163 (369)
.|++|+.-+++...+++.|
T Consensus 36 ~D~~fs~vgLl~g~IL~~~ 54 (84)
T PF07444_consen 36 YDIFFSSVGLLYGLILWFQ 54 (84)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4999999999999999887
No 23
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=30.07 E-value=62 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHhhcccccccchhhhHHHhhhhHHHH
Q psy10689 81 ASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGV 116 (369)
Q Consensus 81 vSfyPQi~~NyrrKSv~GLS~DFl~LNllG~~~y~i 116 (369)
++..||+..-.|++.+|.+.-.|+..=-+.-.+|.+
T Consensus 106 vAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~ 141 (147)
T PF00810_consen 106 VAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL 141 (147)
T ss_pred HHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence 456799999999999999998888765555555544
No 24
>KOG2489|consensus
Probab=29.30 E-value=50 Score=35.31 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=29.4
Q ss_pred EEEeecchhHH-HHHHHHHHHHHHHHhhhHHHHHHHHhhcccccccchh
Q psy10689 56 VDVEKGHHWTT-LSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDY 103 (369)
Q Consensus 56 ~~~~~~~~~~~-is~vlGwiy~~~WsvSfyPQi~~NyrrKSv~GLS~DF 103 (369)
+.++|-.+..- ++...|-+|..-.. -+.||+..|||-|||.-|---.
T Consensus 457 lY~~hKsWYSWvLn~l~~~vy~FGFi-~M~PQLFINYKLKSVAHLPWR~ 504 (592)
T KOG2489|consen 457 LYVEHKSWYSWVLNSLYNGVYAFGFI-FMLPQLFINYKLKSVAHLPWRA 504 (592)
T ss_pred hhcccccHHHHHHHHHHhHHHHHHHH-HhChHHHhhhhhhhhhcCcHHH
Confidence 33444443332 34445555555443 4789999999999998876433
Done!