Query psy10689
Match_columns 369
No_of_seqs 240 out of 715
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 16:06:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g9r_A Fusion complex of HIV-1 26.7 48 0.0016 22.3 2.7 23 199-221 7-29 (42)
2 2ljb_A M2 protein, BM2 protein 16.5 1.9E+02 0.0065 18.8 3.8 27 60-86 5-31 (35)
3 3bkd_A Transmembrane domain of 15.5 1.5E+02 0.0053 17.9 3.0 21 61-81 2-22 (26)
4 2yrl_A KIAA1837 protein; PKD d 12.2 3.3E+02 0.011 21.0 5.1 42 20-61 55-96 (102)
5 2kih_A Matrix protein 2; S31N, 11.0 2.1E+02 0.0073 19.2 3.0 22 60-81 5-26 (43)
6 1xu0_A Prion protein, XLPRP; a 10.1 55 0.0019 27.6 -0.3 30 1-36 8-37 (130)
7 1x5z_A Receptor-type tyrosine- 8.1 1.6E+02 0.0055 21.8 1.8 15 22-36 68-82 (115)
8 2l04_A Major tail protein V; b 7.6 3.9E+02 0.014 20.5 3.9 43 14-59 46-89 (91)
9 1t4w_A CEP-1, C.elegans P53 tu 5.4 30 0.001 30.3 -4.1 22 342-363 123-144 (196)
10 3csg_A MBP, maltose-binding pr 5.1 3E+02 0.01 26.3 2.3 38 1-38 390-438 (461)
No 1
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=26.74 E-value=48 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.6
Q ss_pred cchhhhHHHHHHHHHHHHHHhhh
Q psy10689 199 HKIHWLDFINQCALIKLTITLIK 221 (369)
Q Consensus 199 ~~~~wLd~l~~l~~ikl~~~~ik 221 (369)
..++|.|.-.+++|+|.++...+
T Consensus 7 ~lWnWFdItkWlwyIKI~iMv~~ 29 (42)
T 3g9r_A 7 SLWNWFNITNWLWYIKIEELKSK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 35789999999999998876654
No 2
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=16.54 E-value=1.9e+02 Score=18.79 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=22.3
Q ss_pred ecchhHHHHHHHHHHHHHHHHhhhHHH
Q psy10689 60 KGHHWTTLSTIIGWIYFVSWGASAHCQ 86 (369)
Q Consensus 60 ~~~~~~~is~vlGwiy~~~WsvSfyPQ 86 (369)
.|+++.+.++++|..=+.+|.+--.-|
T Consensus 5 SsDplviaA~IigiLHlilWildrLff 31 (35)
T 2ljb_A 5 SSDPLVVAASIIGILHFIAWTIGHLNQ 31 (35)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhHh
Confidence 478999999999999999998865443
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=15.49 E-value=1.5e+02 Score=17.91 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=18.9
Q ss_pred cchhHHHHHHHHHHHHHHHHh
Q psy10689 61 GHHWTTLSTIIGWIYFVSWGA 81 (369)
Q Consensus 61 ~~~~~~is~vlGwiy~~~Wsv 81 (369)
|+++.+..+++|..=...|..
T Consensus 2 sDplv~aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 2 SDPLVVAASIMGILHLILWIL 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHH
Confidence 678899999999999999975
No 4
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=12.20 E-value=3.3e+02 Score=21.04 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=31.0
Q ss_pred cCCccceEEeecCCceeEEEeeeccccccccceEEEEEEeec
Q psy10689 20 RSNHLNQTLNGYNPGNAIVLIQLQPYEQLEKDVVVHVDVEKG 61 (369)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (369)
.+++.+.+++...+|...+.+.++..+......-+.|+|...
T Consensus 55 ~~~~~~~~~t~~~~G~y~f~LTVtD~~G~s~s~~v~VtV~~~ 96 (102)
T 2yrl_A 55 NANSSVATVTGLQVGTYVFTLTVKDERNLQSQSSVNVIVKEE 96 (102)
T ss_dssp STTSSEEEEESCCSSEEEEEEEEEBTTCCEEEEEEEEEEECC
T ss_pred cCCCccEEEECCCCeEEEEEEEEEeCCCCEEEeEEEEEEcCC
Confidence 455677888888999999999988866555556677776643
No 5
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=11.02 E-value=2.1e+02 Score=19.19 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.6
Q ss_pred ecchhHHHHHHHHHHHHHHHHh
Q psy10689 60 KGHHWTTLSTIIGWIYFVSWGA 81 (369)
Q Consensus 60 ~~~~~~~is~vlGwiy~~~Wsv 81 (369)
.|+++.+.++++|..=.+.|..
T Consensus 5 ssdplv~aa~iiGIlHLiLwil 26 (43)
T 2kih_A 5 SSDPLVVAANIIGILHLILWIL 26 (43)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999987
No 6
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=10.09 E-value=55 Score=27.60 Aligned_cols=30 Identities=40% Similarity=0.764 Sum_probs=4.5
Q ss_pred CCCCCCCCCcccccccccccCCccceEEeecCCcee
Q psy10689 1 WKPPKNGRNLSKSGQNTAKRSNHLNQTLNGYNPGNA 36 (369)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (369)
|||||.-.|.+.-+-..+.+- +-|+-.|++
T Consensus 8 wkp~K~ktn~~~va~aA~Ag~------~~GY~lG~~ 37 (130)
T 1xu0_A 8 WKPPKSKTNMKSVAIGAAAGA------IGGYMLGNA 37 (130)
T ss_dssp ---------------------------CCEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHhhc------cchhhhccc
Confidence 899998888876554433332 445555554
No 7
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=8.06 E-value=1.6e+02 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=10.9
Q ss_pred CccceEEeecCCcee
Q psy10689 22 NHLNQTLNGYNPGNA 36 (369)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (369)
+....++.|+.||..
T Consensus 68 ~~~~~~i~~L~p~t~ 82 (115)
T 1x5z_A 68 PGTSYRLQGLKPNSL 82 (115)
T ss_dssp SSSEEEEECCCTTCE
T ss_pred CCcEEEECCCCCCCe
Confidence 446678888888863
No 8
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=7.63 E-value=3.9e+02 Score=20.51 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=25.6
Q ss_pred cccccccCCccce-EEeecCCceeEEEeeeccccccccceEEEEEEe
Q psy10689 14 GQNTAKRSNHLNQ-TLNGYNPGNAIVLIQLQPYEQLEKDVVVHVDVE 59 (369)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (369)
..+-|.-+...|. +|+|..+|.+.+.+.....+ ..+-+.|+|.
T Consensus 46 d~~vATVd~~G~~~~Vt~v~~GtatITatt~dG~---~~at~~VtV~ 89 (91)
T 2l04_A 46 DKTKATVSVSGMTITVNGVAAGKVNIPVVSGNGE---FAAVAEITVT 89 (91)
T ss_dssp CCSSCEEEEETTEEEEECSSSEEEECCEEETTTT---EEECCEEEEE
T ss_pred CCCEEEEEccCCEEEEEEEcCcEEEEEEEECCCC---EEEEEEEEEE
Confidence 3344444333333 78999999999888654322 2355666654
No 9
>1t4w_A CEP-1, C.elegans P53 tumor suppressor-like transcription factor; DNA-binding domain; 2.10A {Caenorhabditis elegans} SCOP: b.2.5.2
Probab=5.37 E-value=30 Score=30.30 Aligned_cols=22 Identities=27% Similarity=0.384 Sum_probs=15.6
Q ss_pred hhhhhhHHHhHHHHHhhhheee
Q psy10689 342 KLGLAAFTLMFDVLFLVQHYIL 363 (369)
Q Consensus 342 kl~l~l~si~fD~if~~Qhy~l 363 (369)
++.-|.+++.||+|||+|--||
T Consensus 123 i~~PGt~q~~FDlIFmCQ~~Cl 144 (196)
T 1t4w_A 123 IMYPGAVQANFDIIFMCQEKCL 144 (196)
T ss_dssp ECCTTCCEEEEEEEESSCGGGS
T ss_pred EEcCCceehhHHHHHHHHHHhc
Confidence 3444677788888888886553
No 10
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=5.13 E-value=3e+02 Score=26.34 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCCCCCCCcc-------cc----cccccccCCccceEEeecCCceeEE
Q psy10689 1 WKPPKNGRNLS-------KS----GQNTAKRSNHLNQTLNGYNPGNAIV 38 (369)
Q Consensus 1 ~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (369)
|.||.||+-++ |. .+.+..++.+.+++|+|++||...+
T Consensus 390 W~~p~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 438 (461)
T 3csg_A 390 WDASYSSSVSYYRITYGETGGNSPVQEFTVPGSKSTATISGLSPGVDYT 438 (461)
T ss_dssp CCCTTGGGCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEE
T ss_pred ecCCCCCcceEEEEEEEECCCCccceEEEecCCCceEEecCCCCCCEEE
Confidence 77786655322 21 1333445556778889999987654
Done!