Query psy10689
Match_columns 369
No_of_seqs 240 out of 715
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 16:06:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10689.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10689hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f6fb2 b.1.2.1 (B:101-203) Pr 8.8 83 0.006 21.5 2.3 16 20-35 61-76 (103)
2 d2qtva1 a.71.2.1 (A:524-626) S 8.6 63 0.0046 24.2 1.5 16 80-95 56-71 (103)
3 d1x5za1 b.1.2.1 (A:8-109) Rece 7.2 88 0.0064 21.4 1.8 14 23-36 62-75 (102)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 6.8 1.5E+02 0.011 16.5 2.2 15 70-84 3-20 (27)
5 d2b5ic1 b.1.2.1 (C:130-224) Cy 6.3 1E+02 0.0073 21.1 1.6 10 1-10 23-32 (95)
6 d2fnba_ b.1.2.1 (A:) Fibronect 6.1 1.1E+02 0.0082 20.4 1.8 13 23-35 59-71 (95)
7 d1vh9a_ d.38.1.5 (A:) Hypothet 5.7 76 0.0056 23.9 0.7 63 1-71 4-66 (138)
8 d1cwva2 b.1.14.1 (A:597-692) I 5.7 3E+02 0.022 19.2 4.2 29 19-47 58-86 (96)
9 d2qamz1 d.325.1.1 (Z:2-78) Rib 5.6 1.6E+02 0.012 20.6 2.3 25 2-27 9-33 (77)
10 d1owwa_ b.1.2.1 (A:) Fibronect 5.3 1.2E+02 0.0091 20.9 1.7 18 20-37 52-69 (93)
No 1
>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.83 E-value=83 Score=21.52 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=9.4
Q ss_pred cCCccceEEeecCCce
Q psy10689 20 RSNHLNQTLNGYNPGN 35 (369)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (369)
..+..+.++.|+.||.
T Consensus 61 ~~~~~~~~i~~L~p~t 76 (103)
T d1f6fb2 61 TGHQTQFKVFDLYPGQ 76 (103)
T ss_dssp EETCSEEEECCCCTTC
T ss_pred ccceeEEEeCCCCcce
Confidence 3344456677777773
No 2
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.59 E-value=63 Score=24.25 Aligned_cols=16 Identities=19% Similarity=-0.027 Sum_probs=13.2
Q ss_pred HhhhHHHHHHHHhhcc
Q psy10689 80 GASAHCQVLVNWQRKS 95 (369)
Q Consensus 80 svSfyPQi~~NyrrKS 95 (369)
..++|||...+.||-.
T Consensus 56 ~fs~~PqfmfhLRRS~ 71 (103)
T d2qtva1 56 NFSLYPQFTYYLRRSQ 71 (103)
T ss_dssp TTTTHHHHHHHHHTST
T ss_pred HHHhhHHHHHHHhhhh
Confidence 3579999999999943
No 3
>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.24 E-value=88 Score=21.39 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=9.7
Q ss_pred ccceEEeecCCcee
Q psy10689 23 HLNQTLNGYNPGNA 36 (369)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (369)
..+.++.|+.||..
T Consensus 62 ~~~~~i~~L~p~t~ 75 (102)
T d1x5za1 62 GTSYRLQGLKPNSL 75 (102)
T ss_dssp SSEEEEECCCTTCE
T ss_pred cCEEEECCCCCCCE
Confidence 34677888888863
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.80 E-value=1.5e+02 Score=16.46 Aligned_cols=15 Identities=20% Similarity=1.001 Sum_probs=10.3
Q ss_pred HHHHHHHH---HHHhhhH
Q psy10689 70 IIGWIYFV---SWGASAH 84 (369)
Q Consensus 70 vlGwiy~~---~WsvSfy 84 (369)
++||++.. .||+.+.
T Consensus 3 ~lgwv~llvvftwsiamv 20 (27)
T d2e74h1 3 VLGWVALLVVFTWSIAMV 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHhhheeeeE
Confidence 57888754 6887653
No 5
>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.25 E-value=1e+02 Score=21.14 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=6.2
Q ss_pred CCCCCCCCCc
Q psy10689 1 WKPPKNGRNL 10 (369)
Q Consensus 1 ~~~~~~~~~~ 10 (369)
|+||.++..+
T Consensus 23 W~~p~~~~~~ 32 (95)
T d2b5ic1 23 WNNRFLNHCL 32 (95)
T ss_dssp EECSSCSTTC
T ss_pred ECCCCCceeE
Confidence 6777665544
No 6
>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.07 E-value=1.1e+02 Score=20.39 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=9.0
Q ss_pred ccceEEeecCCce
Q psy10689 23 HLNQTLNGYNPGN 35 (369)
Q Consensus 23 ~~~~~~~~~~~~~ 35 (369)
....++.|+.||.
T Consensus 59 ~t~~~i~~L~p~t 71 (95)
T d2fnba_ 59 VGYYTVTGLEPGI 71 (95)
T ss_dssp CSEEEECCCCTTS
T ss_pred CeEEEEecccCCE
Confidence 3446778888886
No 7
>d1vh9a_ d.38.1.5 (A:) Hypothetical protein YbdB {Escherichia coli [TaxId: 562]}
Probab=5.74 E-value=76 Score=23.93 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=41.1
Q ss_pred CCCCCCCCCcccccccccccCCccceEEeecCCceeEEEeeeccccccccceEEEEEEeecchhHHHHHHH
Q psy10689 1 WKPPKNGRNLSKSGQNTAKRSNHLNQTLNGYNPGNAIVLIQLQPYEQLEKDVVVHVDVEKGHHWTTLSTII 71 (369)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~vl 71 (369)
||.|.+-.++.+..+|+. .+++...+....+|++.+.+..++...+.. .+.|.-.+..+....
T Consensus 4 ~~~~~tl~~l~~~~~~~~--~~~LGi~~~~~~~g~~~~~~~v~~~~~n~~------g~~HGG~iatl~D~~ 66 (138)
T d1vh9a_ 4 WKRHLTLDELNATSDNTM--VAHLGIVYTRLGDDVLEAEMPVDTRTHQPF------GLLHGGASAALAETL 66 (138)
T ss_dssp CSSCCCHHHHHHTSTTSH--HHHTTCEEEEECSSCEEEEEECSTTTBCTT------SSBCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHhhCcchH--HHhcCCEEEEEeCCEEEEEEEcCHHHcCCC------CceecchhhhhHHHH
Confidence 666666666665555543 467899999999999999998776433221 245555555554443
No 8
>d1cwva2 b.1.14.1 (A:597-692) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=5.66 E-value=3e+02 Score=19.24 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=22.1
Q ss_pred ccCCccceEEeecCCceeEEEeeeccccc
Q psy10689 19 KRSNHLNQTLNGYNPGNAIVLIQLQPYEQ 47 (369)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (369)
...+..-+++++..+|...|.+.++....
T Consensus 58 ~~~G~~t~~lts~~~G~~~vta~~~g~~~ 86 (96)
T d1cwva2 58 HNDGTYSAPLTSTTLGVATVTVKVDGAAF 86 (96)
T ss_dssp CSSSEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred CCCcEEEEEEECCCceEEEEEEEECCccc
Confidence 34567778889999999999888866443
No 9
>d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p) {Escherichia coli [TaxId: 562]}
Probab=5.56 E-value=1.6e+02 Score=20.55 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=19.2
Q ss_pred CCCCCCCCcccccccccccCCccceE
Q psy10689 2 KPPKNGRNLSKSGQNTAKRSNHLNQT 27 (369)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (369)
|-|..|.|.|.|.. ..+|-+.+|+.
T Consensus 9 K~~~~Gn~vShs~~-kTkR~~~pNlq 33 (77)
T d2qamz1 9 KRPVTGNNRSHALN-ATKRRFLPNLH 33 (77)
T ss_dssp CCCCCCBCCBGGGB-CCBCCCCCCCC
T ss_pred CccccCceeeeccc-ccCceeccceE
Confidence 56889999999965 45777777764
No 10
>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.30 E-value=1.2e+02 Score=20.92 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.7
Q ss_pred cCCccceEEeecCCceeE
Q psy10689 20 RSNHLNQTLNGYNPGNAI 37 (369)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (369)
.....+.++.|+.||...
T Consensus 52 ~~~~~~~~l~gL~P~t~Y 69 (93)
T d1owwa_ 52 PGHLNSYTIKGLKPGVVY 69 (93)
T ss_dssp CSSCCEEEECSCCSSEEE
T ss_pred CCCccEEEECCcccCcEE
Confidence 345556888999999743
Done!