RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10689
(369 letters)
>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 220
Score = 153 bits (389), Expect = 5e-45
Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 8/197 (4%)
Query: 67 LSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFVLYFSYP 126
LS I+GW Y +W S + Q++ NW+RKS GL+FD++ LN++G + Y ++NF+ + +
Sbjct: 3 LSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS 62
Query: 127 VQEEYYLRNPHSANPIQLNDVVFSAHNSLVTLYTVYQCYKYERGNQRLSKGAKLLYTVYA 186
+ E+ L +P + NDV F+ H L+ ++QC YERG QR+S L V
Sbjct: 63 ITNEFPLSSPG----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVAL 118
Query: 187 VWVFLSGFLALVHKIHWLDFINQCALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLD 246
+ F + +AL+ I L F+ + IK+ +TL+KY PQA N+ KST SI V LD
Sbjct: 119 LACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLD 178
Query: 247 FAGGLFSLLQMLILAYN 263
F G LLQ + + N
Sbjct: 179 FTG----LLQRIFQSVN 191
Score = 61.4 bits (149), Expect = 5e-11
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 279 LSLIKTKFTLIFW---AYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFDDWNS 335
LS IK TL+ + A N+ KST SI V LDF G LLQ + + N
Sbjct: 142 LSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTG----LLQRIFQSVNET---- 193
Query: 336 LLTDTTKLGLAAFTLMFDVLFLVQHYILY 364
D K GL + +F+ LF Q + +
Sbjct: 194 --GDPLKAGLFVVSSLFNGLFAAQVFFYW 220
>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat. Members of this family are all
membrane bound proteins possessing a pair of repeats
each spanning two transmembrane helices connected by a
loop. The PQ motif found on loop 2 is critical for the
localisation of cystinosin to lysosomes. However, the PQ
motif appears not to be a general lysosome-targeting
motif. It is thought likely to possess a more general
function. Most probably this involves a glutamine
residue.
Length = 61
Score = 59.9 bits (146), Expect = 7e-12
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 210 CALIKLTITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNF 264
I L + L+ Y PQ N++RKST G SI +LL G + LL ++ +
Sbjct: 5 LGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPP 59
Score = 50.6 bits (122), Expect = 1e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 67 LSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNMIGHSLYGVYNFVLYFSYP 126
LS ++G+I V W S Q++ N++RKS GL+ +L L ++G LY +YN + F
Sbjct: 1 LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60
Query: 127 V 127
+
Sbjct: 61 L 61
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 293 YMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFDD 332
N++RKST G SI +LL G + LL ++ +
Sbjct: 22 IKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPLL 61
>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane
helices in cystinosin, yeast ERS1p, mannose-P-dolichol
utilization defect 1, and other hypothetical proteins.
Function unknown, but likely to be associated with the
glycosylation machinery.
Length = 32
Score = 42.8 bits (102), Expect = 4e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 220 IKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGL 251
+ PQ N++RKST G SI VLL G +
Sbjct: 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32
Score = 35.1 bits (82), Expect = 0.002
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 292 AYMNFKRKSTVGWSIGNVLLDFAGGL 317
N++RKST G SI VLL G +
Sbjct: 7 IIKNYRRKSTEGLSILFVLLWLLGDI 32
Score = 30.5 bits (70), Expect = 0.085
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 86 QVLVNWQRKSVIGLNFDYLGLNMIG 110
Q++ N++RKS GL+ ++ L ++G
Sbjct: 6 QIIKNYRRKSTEGLSILFVLLWLLG 30
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 31.1 bits (70), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 6 NGRNLSKSGQNTAKRSNHLNQTLNGYNPGNAIVLIQLQPYEQLEKD 51
+G+ L SGQ A +NG PG+ V+ ++P+E E+D
Sbjct: 223 HGQQLRVSGQGEAG--------VNGGPPGDLYVVFNVKPHEFFERD 260
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 29.0 bits (66), Expect = 4.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 315 GGLFSLLQM---LILAYNFD---D----WNSLLTDTTKLGLAAFTLM 351
G L LL + L LAYN D D ++++ DT KL L A M
Sbjct: 303 GNLTGLLTVMKGLPLAYNRDLQEDKEPLFDAV--DTLKLSLEAMAGM 347
>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663). This
family contains several uncharacterized eukaryotic
proteins.
Length = 293
Score = 28.9 bits (65), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 31 YNPGNAIVLIQLQPYEQLEKDVVVHVDVEKGHHW 64
+N I++ L P+E K VV+ ++K H W
Sbjct: 91 FNSKQLIIVFGLLPHE--HKMSVVNFKIKK-HRW 121
>gnl|CDD|200570 cd10946, CE4_Mll8295_like, Putative catalytic NodB homology domain
of uncharacterized Mll8295 protein encoded from
Rhizobium loti and its bacterial homologs. This family
is represented by a putative polysaccharide deacetylase
Mll8295 encoded from Rhizobium loti. Although its
biological function still remains unknown, Mll8295 shows
high sequence homology to the catalytic domain of
Streptococcus pneumoniae polysaccharide deacetylase PgdA
(SpPgdA), which is an extracellular metal-dependent
polysaccharide deacetylase with de-N-acetylase activity
toward a hexamer of chitooligosaccharide
N-acetylglucosamine, but not shorter
chitooligosaccharides or a synthetic peptidoglycan
tetrasaccharide. Both Mll8295 and SpPgdA belong to the
carbohydrate esterase 4 (CE4) superfamily. This family
also includes many uncharacterized bacterial
polysaccharide deacetylases.
Length = 217
Score = 28.1 bits (63), Expect = 6.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 1 WKPPKNGRNLSKSGQNTAKRSNHLNQTLNGYNPGNAIVL 39
W+P G +S K+ +HL T N + G I+L
Sbjct: 144 WQPEDWGGTPVQSVDEMVKKIDHLLNTNNTFTKGKVILL 182
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.447
Gapped
Lambda K H
0.267 0.0863 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,825,882
Number of extensions: 1819445
Number of successful extensions: 2010
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 44
Length of query: 369
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 271
Effective length of database: 6,590,910
Effective search space: 1786136610
Effective search space used: 1786136610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.6 bits)