RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10689
(369 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 4e-09
Identities = 64/357 (17%), Positives = 121/357 (33%), Gaps = 88/357 (24%)
Query: 5 KNGRNLSKSGQNTAKRSNHLNQTLNGYNPGNAIVLIQLQPYEQLEKDVVVHVDVEKGHHW 64
N + S N R + + L L++ +PYE ++V ++V+ W
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRR--------LLKSKPYE---NCLLVLLNVQNAKAW 259
Query: 65 TTLSTIIGWIYFVSWGASAHCQVLVNWQRKSVIGLNFDYLGLNM-----IGHSLYGVYN- 118
F + C++L+ + K V D+L + H +
Sbjct: 260 N---------AF-----NLSCKILLTTRFKQVT----DFLSAATTTHISLDHHSMTLTPD 301
Query: 119 -----FVLYFSYPVQEEYYLRNPHSA---NPIQLNDVVFSAHNSLVTLYTVYQCYKYERG 170
+ Y Q+ P NP +L+ + S + L T + ++ ++
Sbjct: 302 EVKSLLLKYLDCRPQDL-----PREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKL 355
Query: 171 NQRLSKGAKLL--YTVYAVWVFLSGFLALVH------KIHWLDFINQCALIKLTITLIKY 222
+ +L ++ LS F H + W D I ++ + L KY
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKY 414
Query: 223 APQAYMNFKRKSTVGWSIGNVLLDFAG---GLFSLLQMLILAYNFGKC--------KTLD 271
+ + K+ SI ++ L+ ++L + ++ YN K LD
Sbjct: 415 S----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 272 SYWDQ-I--HLSLIKT--KFTLIFWAYMNFK------RKSTVGW----SIGNVLLDF 313
Y+ I HL I+ + TL +++F+ R + W SI N L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Score = 38.3 bits (88), Expect = 0.004
Identities = 50/311 (16%), Positives = 91/311 (29%), Gaps = 101/311 (32%)
Query: 12 KSGQNTAKRSNHLNQTLNGYNPGNAIV---LIQLQPYEQLE--KDVVV---HVDVEKGHH 63
+ G T H+N + I+ L L+P E + + V +
Sbjct: 338 RDGLATWDNWKHVN-----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-- 390
Query: 64 WTTLSTIIGWIYFVSWGASAH--CQVLVN-WQRKSVIGLNFDYLGLNMIGHSLYGVYNFV 120
LS I W V+VN + S++ S + +
Sbjct: 391 --LLSLI--------WFDVIKSDVMVVVNKLHKYSLVEKQPKE--------STISIPSIY 432
Query: 121 LYFSYPVQEEYYLRNPHSANPIQLNDVVFSAHNSLVTLYTVYQCYKYERGNQRLSKGAKL 180
L ++ EY L H S+V Y + + + + L
Sbjct: 433 LELKVKLENEYAL------------------HRSIVDHYNIPKTFDSD----DLIPPYLD 470
Query: 181 LYTVYAVWVFLSGFLALVHKIHWLDFINQCALIKLTITLIKYAPQAYMNFK------RKS 234
Y + + + H H L I + L +++F+ R
Sbjct: 471 QY-----F-----YSHIGH--H-LKNIEHPERMTLF-------RMVFLDFRFLEQKIRHD 510
Query: 235 TVGWSIGNVLLDFAGGLFSLLQMLIL--AYNFGKCKTLDSYWD-------QIHLSLIKTK 285
+ W+ +G + + LQ L Y + + +I +LI +K
Sbjct: 511 STAWNA-------SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 286 FT-LIFWAYMN 295
+T L+ A M
Sbjct: 564 YTDLLRIALMA 574
Score = 37.5 bits (86), Expect = 0.006
Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 35/184 (19%)
Query: 117 YNFVLYFSYPVQEEYYLRNPHSANPIQLNDVVFSAHNSLVTLYTVYQCYKYE---RGNQR 173
Y F++ P++ E + + I+ D +++ N + Y V + Y +
Sbjct: 91 YKFLMS---PIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLE 146
Query: 174 LSKGAKL-LY-------TVYAVWVFLSGFL--ALVHKIHWLDFINQCALIKLTITLIKYA 223
L + + T A+ V LS + + KI WL+ N + + L K
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 224 PQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQ-------MLIL----------AYNFGK 266
Q N+ +S +I + L LL+ +L+L A+N
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS- 265
Query: 267 CKTL 270
CK L
Sbjct: 266 CKIL 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 45/255 (17%), Positives = 84/255 (32%), Gaps = 70/255 (27%)
Query: 81 ASAHCQVLVNWQRKSVIGLNF--DYLGLNMIGHSLYGVYNFV------LYFSYPVQEEYY 132
QVL + F YL N I H+L + L + + + Y
Sbjct: 77 VGQFDQVL-----NLCLT-EFENCYLEGNDI-HAL--AAKLLQENDTTLVKTKELIKNYI 127
Query: 133 LRNPHSANPI--QLNDVVFSAHNS---------------------LVTLYTVYQCYK--- 166
+ P + N +F A L LY Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 167 YERGNQRLSKGAKLLYTVYAVWVFLSGFLALVHKIHWL---------DFINQCAL-IKLT 216
+ + LS+ + T+ A VF G + + WL D++ + L
Sbjct: 188 IKFSAETLSELIRT--TLDAEKVFTQGL----NILEWLENPSNTPDKDYLLSIPISCPL- 240
Query: 217 ITLIKYAPQAYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFGKCKTLDSYWDQ 276
I +I+ A Y+ + +G++ G L + G Q L+ A + + +S++
Sbjct: 241 IGVIQLA--HYVVTAK--LLGFTPGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 277 IHLSLIKTKFTLIFW 291
+ ++ T++F+
Sbjct: 296 VRKAI-----TVLFF 305
Score = 30.4 bits (68), Expect = 1.1
Identities = 46/240 (19%), Positives = 69/240 (28%), Gaps = 87/240 (36%)
Query: 98 GLNFDYLG-LNMIGHSLYGVYN-FV-------------LYFSYPVQEEYY---------L 133
G DY L LY Y+ V L + E+ + L
Sbjct: 164 GNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 134 RNPHSANPIQLNDVVFSAHNSLVTLYTVYQ--CYK-------YERGNQR-LSKGA----K 179
NP + D + S S L V Q Y + G R KGA +
Sbjct: 220 ENPSNTPD---KDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 180 LLYTVYAV-----WVFLSGFLALVHK-IHWLDFI---NQCA--LIKLTITLIKYAPQ--- 225
L T A+ W F V K I L FI A L ++++ + +
Sbjct: 276 GLVTAVAIAETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 226 ---AYMNFKRKSTVGWSIGNVLLDFAGGLFSLLQMLILAYNFGKCKTLDSYWDQIHLSLI 282
+ M L + +Q + N L + Q+ +SL+
Sbjct: 333 GVPSPM----------------LSISNLTQEQVQDYVNKTN----SHLPAG-KQVEISLV 371
Score = 29.6 bits (66), Expect = 2.3
Identities = 57/330 (17%), Positives = 93/330 (28%), Gaps = 95/330 (28%)
Query: 37 IVLIQLQPYEQLEKDVVVHV-DVEKGHHWTTLSTIIGWIYFVSWGASAHCQVLV------ 89
I +IQL Y V + G + L GA+ H Q LV
Sbjct: 241 IGVIQLAHYV-----VTAKLLGFTPGELRSYLK-----------GATGHSQGLVTAVAIA 284
Query: 90 ---NWQRKSVIGLNFDYLGLNMIGHSLY-GVYNFVLYFSYPVQEEYYLRNPHSA-NPIQL 144
+W+ +F I + GV E Y P+++ P L
Sbjct: 285 ETDSWE-------SFFVSVRKAITVLFFIGVR---------CYEAY----PNTSLPPSIL 324
Query: 145 NDVVFSAHNS-----LVTLYTVYQCYKY-ERGNQRLSKGAKL---LYTVYAVWVFLSGF- 194
D + + ++ T Q Y + N L G ++ L V +SG
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VSGPP 383
Query: 195 LALVHKIHWLDFINQCALIKLTITLIKYAPQAYMNFKRKSTVGWS---IG---------- 241
+L L A L + I ++ +RK +
Sbjct: 384 QSLYGLNLTLR--KAKAPSGLDQSRIPFS-------ERKLKFSNRFLPVASPFHSHLLVP 434
Query: 242 ---NVLLDFAGG--LFSLLQMLILAYNFGKCKTLDSYWDQIHLSLIKTKFTL-IFWAYMN 295
+ D F+ + I Y+ L I ++ L + W
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 296 FKRKSTVGWSIGNVLLDFAGGLFSLLQMLI 325
+ + + LDF G S L +L
Sbjct: 495 QFKATHI--------LDFGPGGASGLGVLT 516
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.22
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 209 QCALIKLTITLIKYAPQAYMNFKRKSTV 236
Q AL KL +L YA + K+T+
Sbjct: 20 Q-ALKKLQASLKLYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 1.5
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 15 QNTAKRSNHLNQTLNGYNPGNAIVL-IQLQPYEQLE 49
+ K+ L +L Y +A L I+ +E
Sbjct: 19 KQALKK---LQASLKLYADDSAPALAIK----ATME 47
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 28.7 bits (65), Expect = 3.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 92 QRKSVIGLNFDYLGLNMIGHSLYGVYNFVLYFSYPVQEEYYLRNPH 137
+ +IG Y G+N+ G SL GV F P+Q+ +L +
Sbjct: 141 TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTL 186
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 28.3 bits (64), Expect = 4.1
Identities = 10/61 (16%), Positives = 19/61 (31%)
Query: 92 QRKSVIGLNFDYLGLNMIGHSLYGVYNFVLYFSYPVQEEYYLRNPHSANPIQLNDVVFSA 151
Q+K +I Y G + + G F +L +P+ + + F
Sbjct: 145 QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204
Query: 152 H 152
Sbjct: 205 D 205
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 27.5 bits (62), Expect = 8.6
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 315 GGLFSLLQM---LILAYNFD---DWNSLL--TDTTKLGLAAFTLMFDVL 355
G L S+L + L YN D D ++ DT L T + L
Sbjct: 307 GRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTL 355
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 27.1 bits (61), Expect = 9.7
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 315 GGLFSLLQM---LILAYNFD---DWNSLL--TDTTKLGLAAFTLMFDVL 355
G L + L LAYN D D LL T + L + L
Sbjct: 304 GAFVGLSAVVKGLPLAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGL 352
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.447
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,697,270
Number of extensions: 325402
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 22
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.4 bits)