RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10689
         (369 letters)



>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase)
           {Bacteriophage T7 [TaxId: 10760]}
          Length = 129

 Score = 25.9 bits (57), Expect = 4.9
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 5/41 (12%)

Query: 167 YERGNQRLSKGAKLLYTVYAVWVFLSGFLALVHKI--HWLD 205
           +     +L KG+    T Y  +    G       I   W+ 
Sbjct: 78  FSSSRTKLYKGSP---TSYGEFCEKHGIKFADKLIPAEWIK 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,425,046
Number of extensions: 64684
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 6
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)