BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10696
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FZM|A Chain A, Crystal Structure Of The Bacteriocin Syringacin M From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 284
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 32 NVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI 82
NV +P V+ V+ SA VGT + + +Y GK W+ LG+I + +
Sbjct: 159 NVDIRGIPDVMNVIQSARPVGTSSLDVNFAYDVGKDSNASWLTLGNITLRL 209
>pdb|4FZN|A Chain A, Crystal Structure Of Syringacin M Mutant D232a From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 283
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 32 NVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI 82
NV +P V+ V+ SA VGT + + +Y GK W+ LG+I + +
Sbjct: 158 NVDIRGIPDVMNVIQSARPVGTSSLDVNFAYDVGKDSNASWLTLGNITLRL 208
>pdb|4FZL|A Chain A, High Resolution Structure Of Truncated Bacteriocin
Syringacin M From Pseudomonas Syringae Pv. Tomato Dc3000
pdb|4FZL|B Chain B, High Resolution Structure Of Truncated Bacteriocin
Syringacin M From Pseudomonas Syringae Pv. Tomato Dc3000
Length = 247
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 32 NVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI 82
NV +P V+ V+ SA VGT + + +Y GK W+ LG+I + +
Sbjct: 122 NVDIRGIPDVMNVIQSARPVGTSSLDVNFAYDVGKDSNASWLTLGNITLRL 172
>pdb|2G7Z|A Chain A, Conserved Degv-Like Protein Of Unknown Function From
Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty
Acids
pdb|2G7Z|B Chain B, Conserved Degv-Like Protein Of Unknown Function From
Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty
Acids
Length = 282
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 9 ISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVG---TLASFLVSSYLGG 65
I + V I S T +GV+ L++ V+ ++ V GV+SS +V L + + + + G
Sbjct: 147 ILAAVQAIKSKTELYIGVSTLENLVKGGRIGRVTGVLSSLLNVKVVXALKNDELKTLVKG 206
Query: 66 KGHK--TKWV 73
+G+K TKW+
Sbjct: 207 RGNKTFTKWL 216
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 52 GTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQ 102
G+L+ F + Y G + K +W+ + +IGCF T + P GM T+
Sbjct: 111 GSLSMFSIYRY-GSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTR 160
>pdb|1AVA|C Chain C, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|D Chain D, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|3BX1|D Chain D, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|C Chain C, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
Length = 181
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 18 SSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGS 77
ST W ++D + + V+ G + G +F + Y G + H+ K ++ G
Sbjct: 92 QSTEW-----HIDSELAAGRRHVITGPVKDPSPSGRENAFRIEKYSGAEVHEYKLMSCGD 146
Query: 78 IIMSIGCF 85
+G F
Sbjct: 147 WCQDLGVF 154
>pdb|2IWT|B Chain B, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 189
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 18 SSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGS 77
ST W ++D + + V+ G + G +F + Y G + H+ K ++ G
Sbjct: 100 QSTEW-----HIDSELAAGRRHVITGPVKDPSPSGRENAFRIEKYSGAEVHEYKLMSSGD 154
Query: 78 IIMSIGCF 85
+G F
Sbjct: 155 WCQDLGVF 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,107,881
Number of Sequences: 62578
Number of extensions: 195535
Number of successful extensions: 463
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 13
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)