Query psy10696
Match_columns 174
No_of_seqs 158 out of 897
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 16:16:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gfp_A EMRD, multidrug resista 97.0 0.00013 4.4E-09 59.4 0.3 140 5-173 3-147 (375)
2 3o7q_A L-fucose-proton symport 97.0 4.8E-05 1.6E-09 62.9 -2.5 145 3-173 27-176 (438)
3 1pw4_A Glycerol-3-phosphate tr 96.5 0.00021 7.1E-09 59.1 -1.6 144 4-173 30-178 (451)
4 1pw4_A Glycerol-3-phosphate tr 96.5 0.00039 1.3E-08 57.5 -0.4 148 5-173 255-406 (451)
5 4aps_A DI-OR tripeptide H+ sym 95.9 0.0006 2.1E-08 57.4 -2.2 144 5-173 16-169 (491)
6 2xut_A Proton/peptide symporte 94.9 0.0037 1.3E-07 53.0 -0.7 141 6-173 16-171 (524)
7 3o7q_A L-fucose-proton symport 90.7 0.045 1.5E-06 44.8 -0.0 61 4-64 117-177 (438)
8 4gc0_A D-xylose-proton symport 86.2 0.26 8.9E-06 40.9 1.6 60 4-63 126-185 (491)
9 2gfp_A EMRD, multidrug resista 82.8 0.38 1.3E-05 38.4 1.2 62 4-65 88-149 (375)
10 4gc0_A D-xylose-proton symport 72.6 0.7 2.4E-05 38.3 -0.2 111 40-157 55-170 (491)
11 2cfq_A Lactose permease; trans 67.2 1.5 5.1E-05 35.9 0.7 62 8-72 13-76 (417)
12 2xut_A Proton/peptide symporte 66.7 2.9 9.9E-05 34.9 2.4 60 4-63 109-171 (524)
13 4aps_A DI-OR tripeptide H+ sym 64.2 1.8 6.3E-05 35.7 0.7 69 5-73 387-455 (491)
14 2cfq_A Lactose permease; trans 63.6 0.089 3E-06 43.5 -7.5 109 41-173 260-372 (417)
No 1
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.98 E-value=0.00013 Score=59.37 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhh
Q psy10696 5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIG 83 (174)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g 83 (174)
..+++..++.+++.+.+.+ .+.+++++++.+. +.|.+.+.+.++..++.++.+++.+|-.|-|.+-++.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIP----AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh----hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 4567777888876665444 3445677888885 9999999999999999999999988755545556777777777
Q ss_pred cccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHHHH
Q psy10696 84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEALGC 159 (174)
Q Consensus 84 ~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~~r 159 (174)
.++..+. ++.+ .+.+..++.|++.+..++.. -+..++|+|+.+.|+... ..
T Consensus 79 ~~~~~~~--------------------~~~~----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 133 (375)
T 2gfp_A 79 TLVAVTT--------------------SSLT----VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNM-GI 133 (375)
T ss_dssp HHHHHHH--------------------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHH-HH
T ss_pred HHHHHHh--------------------ccHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHH-HH
Confidence 7665432 1111 12345666666665544433 345788999999999876 44
Q ss_pred hhccCcchhhhhcc
Q psy10696 160 GLAFIPGPIIYGAL 173 (174)
Q Consensus 160 llg~IP~Pi~fG~~ 173 (174)
-+|.+.+|.+.|++
T Consensus 134 ~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 134 LVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHH
Confidence 55777788877664
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.96 E-value=4.8e-05 Score=62.90 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhh
Q psy10696 3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMS 81 (174)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~ 81 (174)
.+..+++..++.|+..+... +.+..++++++.+. +.|.+.+.+.++..++.++.+.+.+|-.|-|.+-++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLND----ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 35566677777777554322 23445677888885 99999999999999999999999888666667778888888
Q ss_pred hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEE----eeecCCCCchhHHHHHHHH
Q psy10696 82 IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQ----FRCVSPEDKSLSIGITEAL 157 (174)
Q Consensus 82 ~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lg----l~~V~~~~sslylGi~~~~ 157 (174)
++.++..+.. .. ++.+. +.++.++.|++.+..++.. -+..++|+|+.++|+...
T Consensus 103 ~~~~~~~~~~--~~---------------~~~~~----l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 160 (438)
T 3o7q_A 103 LGAALFWPAA--EI---------------MNYTL----FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT- 160 (438)
T ss_dssp HHHHHHHHHH--HT---------------TCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHH-
T ss_pred HHHHHHHhcc--cc---------------ccHHH----HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHH-
Confidence 8887763210 00 11121 2345667777765555444 346889999999998876
Q ss_pred HHhhccCcchhhhhcc
Q psy10696 158 GCGLAFIPGPIIYGAL 173 (174)
Q Consensus 158 ~rllg~IP~Pi~fG~~ 173 (174)
..-+|.+.+|.+.|++
T Consensus 161 ~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 161 FNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556777788776654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.54 E-value=0.00021 Score=59.14 Aligned_cols=144 Identities=8% Similarity=0.041 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhh
Q psy10696 4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSI 82 (174)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~ 82 (174)
+...+++.++.++..+.+.+. +..+.+++ .+. +.|.+.+.+.++..++.++.+++.+|-.|-|++-++.++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALA----MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHH----HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 445666777777755543333 33555666 675 999999999999999999999998876666677888888888
Q ss_pred hcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHHHHHHH
Q psy10696 83 GCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGITEALG 158 (174)
Q Consensus 83 g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi~~~~~ 158 (174)
+.++..+.... .+ +.+.+ .++.++.|++.+..++ +.-+..++|+|+.++|+... .
T Consensus 105 ~~~~~~~~~~~-~~---------------~~~~l----~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~ 163 (451)
T 1pw4_A 105 VMLFMGFVPWA-TS---------------SIAVM----FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC-A 163 (451)
T ss_dssp HHHHHHHCHHH-HS---------------SSSHH----HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH-H
T ss_pred HHHHHHhhhhc-cc---------------cHHHH----HHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH-H
Confidence 88877652100 00 01112 2345555555544433 33346788999999999776 4
Q ss_pred HhhccCcchhhhhcc
Q psy10696 159 CGLAFIPGPIIYGAL 173 (174)
Q Consensus 159 rllg~IP~Pi~fG~~ 173 (174)
.-+|.+.+|.+.|++
T Consensus 164 ~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556788888877653
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.47 E-value=0.00039 Score=57.48 Aligned_cols=148 Identities=9% Similarity=0.059 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCCC--Ccceeeeehhhhhh
Q psy10696 5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGKG--HKTKWVALGSIIMS 81 (174)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~--~~prwig~g~l~~~ 81 (174)
..+++..+++..+..++.+....++. +.++.+. +.|.+.+...++..++.++.+++.+|- .|.+.+.++.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLK---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBT---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 44556667777766666666666664 3366775 999999999999999999999887764 33334444444444
Q ss_pred -hhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEeeecCCCCchhHHHHHHHHHHh
Q psy10696 82 -IGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCG 160 (174)
Q Consensus 82 -~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl~~V~~~~sslylGi~~~~~rl 160 (174)
++.++..+.+ + .+ .+......++.-+..+....+.+.+..+.+++++++.+.|+...+.++
T Consensus 332 ~~~~~~~~~~~----~-------------~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 332 TIATIVYWMNP----A-------------GN-PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHTTSCC----T-------------TC-HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----c-------------cC-HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 4444433320 0 01 121211111111222222233334455678889999999999998888
Q ss_pred hccCcchhhhhcc
Q psy10696 161 LAFIPGPIIYGAL 173 (174)
Q Consensus 161 lg~IP~Pi~fG~~ 173 (174)
+|...+|.+.|++
T Consensus 394 ~g~~~~~~~~g~l 406 (451)
T 1pw4_A 394 GGSVAASAIVGYT 406 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7889999988865
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=95.89 E-value=0.0006 Score=57.37 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhcccccccceeeeeeccc--ccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCC-CCcceeeeehhhhh
Q psy10696 5 IILLISSTVLGIGSSTYWSLGVAYLDDN--VRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGK-GHKTKWVALGSIIM 80 (174)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~-~~~prwig~g~l~~ 80 (174)
...++..++...+..+..+....|+++. +++++.+. +.|.+.+.+.++..++.++.+++.+| -.|-|.+-++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~ 95 (491)
T 4aps_A 16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI 95 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 3445566666665555555666676542 34578886 99999999999999999999999887 45555566788888
Q ss_pred hhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCceeEEe----eecCCCC--chhHHHHH
Q psy10696 81 SIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQF----RCVSPED--KSLSIGIT 154 (174)
Q Consensus 81 ~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~lgl----~~V~~~~--sslylGi~ 154 (174)
+++.++..+.+ + .+.+ .++.++.|++.....+... +..++++ |+.++++.
T Consensus 96 ~~~~~~~~~~~-------------------~-~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 151 (491)
T 4aps_A 96 MLGHIVLALPF-------------------G-ASAL----FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIF 151 (491)
T ss_dssp HHHHHHHHSCC-------------------S-TTHH----HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh-------------------h-HHHH----HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHH
Confidence 88877765431 1 1111 2344555555554444332 3567777 66677766
Q ss_pred HHHHHhhccCcchhhhhcc
Q psy10696 155 EALGCGLAFIPGPIIYGAL 173 (174)
Q Consensus 155 ~~~~rllg~IP~Pi~fG~~ 173 (174)
.. ..-+|.+.+|.+.|++
T Consensus 152 ~~-~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 152 VF-GINLGAFIAPLIVGAA 169 (491)
T ss_dssp HH-HHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHH
Confidence 65 4456777788777654
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.85 E-value=0.0037 Score=52.99 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=88.4
Q ss_pred HHHHHHHHhhcccccccceeeeeecccccCCC------chh-HHHHHHHHHhhhhhhhhhhhhccCCCC-Ccceeeeehh
Q psy10696 6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNK------MPV-VLGVMSSAWDVGTLASFLVSSYLGGKG-HKTKWVALGS 77 (174)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~~-~~prwig~g~ 77 (174)
.+++.+++...+..+..+....|+. ++++ .+. +.|.+.+.+.++..++.++.+++.+|- .|-|.+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~ 92 (524)
T 2xut_A 16 YIIASEACERFSFYGMRNILTPFLM---TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455666666655545555555553 3445 675 999999999999999999999998876 5545566777
Q ss_pred hhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHHHHHHHHhhcCccCcee----EEeeecCCCCchhHHHH
Q psy10696 78 IIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTI----IQFRCVSPEDKSLSIGI 153 (174)
Q Consensus 78 l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf~~~q~l~g~g~tP~~~----lgl~~V~~~~sslylGi 153 (174)
++.+++.++..+.+ .+.+.+ .++.++.|++.+...+ +.-+.+++++|+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~-------------------~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 93 LIYCVGHAFLAIFE-------------------HSVQGF----YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp HHHHHHHHHHHHTS-------------------SCHHHH----HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred HHHHHHHHHHHHhc-------------------ccHHHH----HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence 77777777655431 011211 2344555555544433 33346888888766655
Q ss_pred ---HHHHHHhhccCcchhhhhcc
Q psy10696 154 ---TEALGCGLAFIPGPIIYGAL 173 (174)
Q Consensus 154 ---~~~~~rllg~IP~Pi~fG~~ 173 (174)
... ..-+|.+.+|.+.|++
T Consensus 150 ~~~~~~-~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 150 FDMFYF-TINFGSFFASLSMPLL 171 (524)
T ss_dssp HHHHHH-HHHHHHHHHHHTSTHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHH
Confidence 444 3445667777766643
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=90.75 E-value=0.045 Score=44.79 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccC
Q psy10696 4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLG 64 (174)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g 64 (174)
+..++++|+++|++.+...+...+++.|..++.+.....|...+...+|..++..+.+++.
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999988877777889999999999999998888765
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=86.15 E-value=0.26 Score=40.92 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhcc
Q psy10696 4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYL 63 (174)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~ 63 (174)
+..++++|+++|++.++.++.+.+|+.|..++.+.....+....+..+|..++.......
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 345889999999999999999999999988877666677777777777777766655443
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=82.81 E-value=0.38 Score=38.43 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCC
Q psy10696 4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGG 65 (174)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~ 65 (174)
+..+.++|+++|++.+...+...+++.|..++.+.+...+.......+|..++..+.++..+
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34677899999999999999888999888877777778888888888888888877776643
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=72.63 E-value=0.7 Score=38.27 Aligned_cols=111 Identities=5% Similarity=0.054 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCC-CCccchhHHHHH
Q psy10696 40 VVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACP-ADCGSHFMWFIF 118 (174)
Q Consensus 40 ~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~-~~C~~~~~~f~~ 118 (174)
++.|++.+.+.+|.+++.++.+++++|--|-+-+-++.+++.++++..++......... ..... ....++. .
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~---~~~~~~~~~a~~~----~ 127 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSIN---PDNTVPVYLAGYV----P 127 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS---SSSSCCGGGGGCH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---chhHHHHHHhhhH----H
Confidence 38899999999999999999999988743334456777888888887775421110000 00000 0011111 2
Q ss_pred HHHHHHHHhhcCccCceeEEee----ecCCCCchhHHHHHHHH
Q psy10696 119 ILCLLNFFSATGRAGNTIIQFR----CVSPEDKSLSIGITEAL 157 (174)
Q Consensus 119 lf~~~q~l~g~g~tP~~~lgl~----~V~~~~sslylGi~~~~ 157 (174)
.++++.++.|+|....++.... ..|+++|+...+.....
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 3456788888887766665544 57788898888876653
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=67.24 E-value=1.5 Score=35.94 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=42.3
Q ss_pred HHHHHHhhcccccccceeeeeecccccCCCchh-HHHHHHHHHhhhhhhhhhhhhccCCC-CCccee
Q psy10696 8 LISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLGGK-GHKTKW 72 (174)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~-~~g~i~~~~~ig~~~~~~~~s~~g~~-~~~prw 72 (174)
....++..++.+.+.++...|+ +++++.+. +.|.+.+.+.++..++.++.+++.+| ++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l---~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l 76 (417)
T 2cfq_A 13 GLFFFFYFFIMGAYFPFFPIWL---HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHH---HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3334444444444444444555 35567775 99999999999999999999999887 445443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=66.69 E-value=2.9 Score=34.89 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcccccccceeeeeecccccCCCchh---HHHHHHHHHhhhhhhhhhhhhcc
Q psy10696 4 VIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV---VLGVMSSAWDVGTLASFLVSSYL 63 (174)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~---~~g~i~~~~~ig~~~~~~~~s~~ 63 (174)
+..+.++++++|++.+...+...+++.|..++.+... ..+.......+|.+++..+.+++
T Consensus 109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999998888888888776665542 34447777777777766665544
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=64.16 E-value=1.8 Score=35.74 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcccccccceeeeeecccccCCCchhHHHHHHHHHhhhhhhhhhhhhccCCCCCcceee
Q psy10696 5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWV 73 (174)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~s~~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwi 73 (174)
..+.++.++.|++.....+...+++.|..++...+.-.|+......+|..++..+.++..+.+.+..|.
T Consensus 387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~ 455 (491)
T 4aps_A 387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFS 455 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 345667788888888777777788888877776777888899999999999999888876544443343
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=63.57 E-value=0.089 Score=43.48 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhccCCCCCcceeeeehhhhhhhhcccccccccccCCCCccccCCCCCCccchhHHHHHHH
Q psy10696 41 VLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFIL 120 (174)
Q Consensus 41 ~~g~i~~~~~ig~~~~~~~~s~~g~~~~~prwig~g~l~~~~g~~l~~l~~c~c~~~~~~~~~~C~~~C~~~~~~f~~lf 120 (174)
..|.+.+...++..++..+...+.+|-.|.|.+-.+.+..+++.+...+.+ + .+...
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-------------------~-~~~~~--- 316 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------------------S-ALEVV--- 316 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-------------------S-HHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-------------------c-HHHHH---
Confidence 667888888888888888777776654444445556666666544433221 0 01111
Q ss_pred HHHHHHhhcC----ccCceeEEeeecCCCCchhHHHHHHHHHHhhccCcchhhhhcc
Q psy10696 121 CLLNFFSATG----RAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 173 (174)
Q Consensus 121 ~~~q~l~g~g----~tP~~~lgl~~V~~~~sslylGi~~~~~rllg~IP~Pi~fG~~ 173 (174)
+.+++.+.+ ..+.+...-+..+++.|+.+.|+.+...+-+|.+.+|.+.|++
T Consensus 317 -~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 317 -ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp -HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 111111111 1122222233467777888878754445666777888888764
Done!