RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10696
(174 letters)
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 78.9 bits (195), Expect = 1e-17
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 84 CFLRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVS 143
NCS + A++G CP+DC + F++F+ ++ +L+F +I RCV
Sbjct: 465 SCSTWSNNCSSGNSHSASKGYCPSDCCTQFLYFLILMAILSFIGFLSAIPLYMIVLRCVP 524
Query: 144 PEDKSLSIGITEALGCGLAFIPGPIIYGAL 173
PE+KSL++G+ L L FIP PII+GAL
Sbjct: 525 PEEKSLALGVQWLLIRLLGFIPAPIIFGAL 554
Score = 46.9 bits (112), Expect = 1e-06
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 43 GVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL 86
G++SS++D+G L + SY GG+GH+ +W+ +G ++M++G L
Sbjct: 41 GIISSSYDIGNLLLIIFVSYFGGRGHRPRWIGIGGLLMALGSLL 84
Score = 42.3 bits (100), Expect = 5e-05
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYL 63
++L + + GIG++ ++LG++Y+DDNV+ P+ LG++ + G FL+ S+
Sbjct: 140 LLLFVGQLLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFC 198
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 57.8 bits (140), Expect = 2e-10
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 89 YTNCSCIP---NGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPE 145
YTNCSC+ N A +G C C + ++F+ + L+F + ++ R V+PE
Sbjct: 491 YTNCSCVQTPGNSSAKKGLCNPSCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPE 550
Query: 146 DKSLSIGITEALGCGLAFIPGPIIYGALL 174
++SL+IG+ IP PI++G L+
Sbjct: 551 ERSLAIGLQWLCMRVFGTIPAPILFGLLI 579
Score = 42.0 bits (99), Expect = 6e-05
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 5 IILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY 62
++ L+S + GIG++ + LG++Y+DD + P+ +G++ S G +L+ S+
Sbjct: 173 LLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSF 230
Score = 32.0 bits (73), Expect = 0.13
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 6 ILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPV-VLGVMSSAWDVGTLASFLVSSYLG 64
+ + T + Y L + L R+ K+ G+++ ++++G L + SY G
Sbjct: 33 VFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFG 92
Query: 65 GKGHKTKWVALGSIIMSIGCFLRT 88
K H+ + +G IM +G FL +
Sbjct: 93 TKLHRPIVIGIGCAIMGLGSFLLS 116
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 29.9 bits (68), Expect = 0.33
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY 62
++ +L+I+ + G G++ G A + D + V LG+MS+ +G L +
Sbjct: 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV 109
Query: 63 LGGKGHK 69
L
Sbjct: 110 LAQFLGW 116
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 28.9 bits (65), Expect = 1.5
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY 62
S+ +LL+ + G+G + A + D + LG++S+ + +G L+
Sbjct: 84 SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL 143
Query: 63 LGGKGHKTKWVALGSIIMSIGCFL 86
L + L I+++ +
Sbjct: 144 LASLFG-WRAAFLILAILALLAAV 166
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 28.4 bits (64), Expect = 1.7
Identities = 16/84 (19%), Positives = 34/84 (40%)
Query: 3 SVIILLISSTVLGIGSSTYWSLGVAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSY 62
S+ +LL+ +LG+G + A + + + LG+ S+ + +G L L+
Sbjct: 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 63 LGGKGHKTKWVALGSIIMSIGCFL 86
L + +I+ + L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALL 169
>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF);
Provisional.
Length = 145
Score = 27.8 bits (62), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 65 GKGHKTKWVALGSIIMSIGCFLRTYTN 91
GK K W+A G II+ +G LR Y +
Sbjct: 63 GKMRKKVWIAAGDIIL-VG--LRDYQD 86
>gnl|CDD|220036 pfam08837, DUF1810, Protein of unknown function (DUF1810). This is
a family of uncharacterized proteins. The structure of
one of the members in this family has been solved and it
adopts a mainly alpha helical structure.
Length = 139
Score = 27.5 bits (62), Expect = 2.3
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 111 SHFMWFIF 118
SH+MWFIF
Sbjct: 31 SHWMWFIF 38
>gnl|CDD|214343 CHL00035, psbC, photosystem II 44 kDa protein.
Length = 473
Score = 27.4 bits (61), Expect = 4.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 5 IILLISSTVLGIGSSTYWSLGVAYLDDNV--------RKNKMPVVLGVMSSAWDVGTLAS 56
++ LISS VLG G + LG L+++ KNKM +LG+ +G
Sbjct: 116 VLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDKNKMTTILGIHLILLGIGAFLL 175
Query: 57 FLVSSYLGG 65
+ Y GG
Sbjct: 176 VFKALYFGG 184
>gnl|CDD|129531 TIGR00439, ftsX, putative protein insertion permease FtsX. FtsX is
an integral membrane protein encoded in the same operon
as signal recognition particle docking protein FtsY and
FtsE. It belongs to a family of predicted permeases and
may play a role in the insertion of proteins required
for potassium transport, cell division, and other
activities. FtsE is a hydrophilic nucleotide-binding
protein that associates with the inner membrane by means
of association with FtsX [Cellular processes, Cell
division, Protein fate, Protein and peptide secretion
and trafficking].
Length = 309
Score = 26.7 bits (59), Expect = 6.4
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 112 HFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYG 171
+WF+ +L + F GN+I + + +S + SI +T+ LG +FI P +Y
Sbjct: 180 KVLWFLSVLMGMAVFLV---IGNSI-RLQILSRRE---SIEVTKLLGATDSFILRPFLYQ 232
Query: 172 ALL 174
+
Sbjct: 233 GMW 235
>gnl|CDD|148700 pfam07245, Phlebovirus_G2, Phlebovirus glycoprotein G2. This
family consists of several Phlebovirus glycoprotein G2
sequences. Members of the Bunyaviridae family acquire an
envelope by budding through the lipid bilayer of the
Golgi complex. The budding compartment is thought to be
determined by the accumulation of the two heterodimeric
membrane glycoproteins G1 and G2 in the Golgi.
Length = 504
Score = 26.7 bits (59), Expect = 6.6
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 30 DDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCFL 86
DD + V+ + WD + S LV +LGG KT V LG I + I F+
Sbjct: 431 DDRRHEGGSSTVVNPKTGRWDFSSWFSGLVD-WLGGP-LKTILVILGFIALGIVLFV 485
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 26.5 bits (59), Expect = 7.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 119 ILCLLNFFSATGRAGNTIIQFRCVSPEDKSLSIGITEALGCGLAFIPGPIIYGAL 173
++ L F G G +I L+ G+ +LG L I GPI+ GA+
Sbjct: 318 LVALGFFGLGAGAIGWALISDN-APGNIAGLTGGLINSLGN-LGGIVGPIVIGAI 370
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.455
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,726,618
Number of extensions: 775930
Number of successful extensions: 1189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 54
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.2 bits)