RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10696
         (174 letters)



>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll
          beta-sandwich fold, unknown function; 2.52A {Homo
          sapiens} SCOP: b.29.1.22
          Length = 201

 Score = 26.8 bits (60), Expect = 2.9
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 17 GSSTYWSLGVAYLDDNVRKNKMPV 40
          G+S  W +GV   +   R+ K+ +
Sbjct: 72 GTSQVWDVGVCK-ESVNRQGKIEL 94


>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding,
          tripartite motif (TRIM) protein, SPRY systemic lupus
          erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB:
          2vol_B* 2iwg_B*
          Length = 188

 Score = 26.8 bits (60), Expect = 3.0
 Identities = 7/23 (30%), Positives = 8/23 (34%), Gaps = 1/23 (4%)

Query: 17 GSSTYWSLGVAYLDDNVRKNKMP 39
               W LGV   D   RK +  
Sbjct: 71 TQKEAWDLGVCR-DSVQRKGQFS 92


>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY,
          TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo
          sapiens}
          Length = 193

 Score = 26.0 bits (58), Expect = 5.4
 Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 16 IGSSTYWSLGVAYLDDNVRKNKMP 39
          +G    W+LGV    +  R+ ++ 
Sbjct: 74 VGDKPRWALGVIA-AEAPRRGRLH 96


>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton,
          actin-binding inflammatory response, metal-binding,
          signaling protein; 1.35A {Homo sapiens}
          Length = 191

 Score = 26.0 bits (58), Expect = 6.8
 Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 1/24 (4%)

Query: 17 GSSTYWSLGVAYLDDNVRKNKMPV 40
          G  T W LG        RK  M +
Sbjct: 75 GDKTAWILGACK-TSISRKGNMTL 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.141    0.455 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,627,233
Number of extensions: 142876
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 11
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)