RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10696
         (174 letters)



>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
           DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 171

 Score = 32.3 bits (72), Expect = 0.015
 Identities = 20/143 (13%), Positives = 41/143 (28%)

Query: 26  VAYLDDNVRKNKMPVVLGVMSSAWDVGTLASFLVSSYLGGKGHKTKWVALGSIIMSIGCF 85
           +  L+    K ++   +   +S   V  LA  +            +        +     
Sbjct: 20  LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR 79

Query: 86  LRTYTNCSCIPNGMATQGACPADCGSHFMWFIFILCLLNFFSATGRAGNTIIQFRCVSPE 145
                   C             +   +F +       L+    +GR G+  +    ++  
Sbjct: 80  QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN 139

Query: 146 DKSLSIGITEALGCGLAFIPGPI 168
           D+     I + LG  +A IP  I
Sbjct: 140 DRFNLYKIEQELGTEIAAIPATI 162


>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 130

 Score = 26.7 bits (59), Expect = 1.1
 Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 1/16 (6%)

Query: 104 AC-PADCGSHFMWFIF 118
           +C P DCG++ +   F
Sbjct: 58  SCKPHDCGNNRLLVAF 73


>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 140

 Score = 26.2 bits (58), Expect = 1.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 111 SHFMWFIF 118
            H+MWF+F
Sbjct: 30  GHWMWFVF 37


>d1gpqa_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
           {Escherichia coli [TaxId: 562]}
          Length = 127

 Score = 26.3 bits (58), Expect = 1.5
 Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)

Query: 104 AC-PADCGSHFMWFIF 118
           AC P DCGS  +  ++
Sbjct: 55  ACKPHDCGSQRIAVMW 70


>d2fika2 d.19.1.1 (A:8-185) CD1, alpha-1 and alpha-2 domains
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 178

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)

Query: 2  FSVIILLISSTVLGIGSSTYWSLGVAYLDD 31
          ++   L +SS       S   +  V +L D
Sbjct: 1  YTFRCLQMSSFA---NRSWSRTDSVVWLGD 27


>d1lsia_ g.7.1.1 (A:) Long neurotoxin 1 (component LSIII) {Sea snake
           (Laticauda semifasciata) [TaxId: 8631]}
          Length = 66

 Score = 23.6 bits (51), Expect = 4.8
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 84  CFLRTYTNCSCIPNGMATQGACPADC 109
           C+++++ N  C   G   +  C A C
Sbjct: 20  CYVKSWCNAWCSSRGKVLEFGCAATC 45


>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
           {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 25.2 bits (54), Expect = 5.3
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 139 FRCVSPEDKSLSIGITEALGCGLAFIPGPII 169
              V+P    +++   E +       PG ++
Sbjct: 353 VGLVTPLRDGMNLVAKEYVAAQDPANPGVLV 383


>d2po6a2 d.19.1.1 (A:6-183) CD1, alpha-1 and alpha-2 domains
          {Human (Homo sapiens), CD1d [TaxId: 9606]}
          Length = 178

 Score = 24.9 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 2  FSVIILLISSTVLGIGSSTYWSLGVAYLDD 31
          F +  L ISS      SS   + G+A+L +
Sbjct: 3  FPLRCLQISSFA---NSSWTRTDGLAWLGE 29


>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 447

 Score = 24.8 bits (54), Expect = 8.3
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 5   IILLISSTVLGIGSSTYWSLGVAYLDDNVRK--------NKMPVVLGVMSSAWDVGTLAS 56
           ++ LISS VLG G   +   G   L++            NKM  +LG       +G L  
Sbjct: 90  VVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLL 149

Query: 57  FLVSSYLGG 65
              + + GG
Sbjct: 150 VAKAMFFGG 158


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.455 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,389
Number of extensions: 27253
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 21
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.2 bits)