Query psy10697
Match_columns 264
No_of_seqs 116 out of 161
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 16:17:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3808|consensus 100.0 1.2E-35 2.6E-40 225.5 2.0 71 194-264 1-73 (74)
2 PF06842 DUF1242: Protein of u 99.7 1.1E-17 2.3E-22 112.9 1.4 35 203-237 1-36 (36)
3 PF06152 Phage_min_cap2: Phage 66.1 7.1 0.00015 36.4 3.6 57 81-142 222-287 (361)
4 PF14804 Jag_N: Jag N-terminus 34.0 17 0.00037 25.9 0.5 20 224-243 29-48 (52)
5 COG4053 Uncharacterized protei 33.2 50 0.0011 30.7 3.4 42 113-154 162-224 (244)
6 PF05083 LST1: LST-1 protein; 24.6 44 0.00096 26.4 1.4 19 203-221 6-24 (74)
7 PRK02913 hypothetical protein; 19.0 72 0.0016 27.9 1.7 31 210-243 78-110 (150)
8 PF03908 Sec20: Sec20; InterP 18.0 75 0.0016 23.9 1.4 14 205-218 75-88 (92)
9 PF14018 DUF4234: Domain of un 16.6 92 0.002 22.3 1.5 15 202-216 2-16 (75)
10 cd02905 Macro_GDAP2_like Macro 16.1 58 0.0012 26.5 0.4 20 66-85 48-67 (140)
No 1
>KOG3808|consensus
Probab=100.00 E-value=1.2e-35 Score=225.50 Aligned_cols=71 Identities=49% Similarity=0.889 Sum_probs=69.2
Q ss_pred chhhccchhHHHHHHHHHhhhcccccc--cCcccccCCCccceeeeeheeecCCcchHHHHHHHHHHHHhhcC
Q psy10697 194 MLALFNFQSLLTVIILLICTCTYLRSL--FPSLLDRNKTGVMGTFWKFARIGERKSPYVSVFCLGLAMASLFM 264 (264)
Q Consensus 194 MSALFNFqSLLtVILLlICTCTYLR~~--fPsLLDrnKtGf~GVFWKaARIGERLSPYVSLaCI~MAf~vLF~ 264 (264)
|||+|||||+|+|+|||||||||+|++ +|+|+++||+||+|+|||+|||||||||||+++|++|||++||+
T Consensus 1 ~~nvysfdgllv~~LLfiCTCAYlk~vpr~~swllseKkGf~GvFyKaAvIG~Rlh~~Va~aClimAfyVLF~ 73 (74)
T KOG3808|consen 1 PSNVYSFDGLLVVILLFICTCAYLKSVPRFPSWLLSEKKGFMGVFYKAAVIGERLHPWVAAACLIMAFYVLFW 73 (74)
T ss_pred CCceeccchHHHHHHHHHHHHHHHhhcccchHHHHhccccceeehHHHHHHHhhhhHHHHHHHHHHHHheeEe
Confidence 689999999999999999999999998 88999999999999999999999999999999999999999984
No 2
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=99.67 E-value=1.1e-17 Score=112.93 Aligned_cols=35 Identities=83% Similarity=1.497 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhcccccccCcccccCC-Cccceeee
Q psy10697 203 LLTVIILLICTCTYLRSLFPSLLDRNK-TGVMGTFW 237 (264)
Q Consensus 203 LLtVILLlICTCTYLR~~fPsLLDrnK-tGf~GVFW 237 (264)
||+|+||+||||||+|+++|+++|++| +||+|+||
T Consensus 1 lL~ViLL~ICTCtYir~~~P~l~dr~kk~G~~G~fw 36 (36)
T PF06842_consen 1 LLTVILLLICTCTYIRSIFPSLLDRNKKTGFRGVFW 36 (36)
T ss_pred ChhhHHHHHHHhHhHHhHCccccccCCCcccccccC
Confidence 589999999999999999999999765 99999998
No 3
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=66.06 E-value=7.1 Score=36.38 Aligned_cols=57 Identities=37% Similarity=0.602 Sum_probs=34.5
Q ss_pred ecceee-eccCCCCCCccccccccccceeEEeeecc--CCCCC-cee-----eeecceeeeEeecCcceec
Q psy10697 81 RGYDLM-LSDKKGGRPTCTPLVGTSHQKVCISTWTT--PKTGD-PVV-----MKHAGKCHWVTCGTSWYPL 142 (264)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~ 142 (264)
.|.|++ .|..-|-||.|.|.-| ||--.+..+ ++.+. |-+ -..+|-||| .|.-++||.
T Consensus 222 ~G~dlv~vS~H~garp~cap~QG----kV~s~~~~~~~~~~~~y~~~~~~gyg~~~Gl~g~-NCrH~~~p~ 287 (361)
T PF06152_consen 222 LGIDLVEVSSHPGARPSCAPWQG----KVYSLSGGGRPGKDGKYPSLSDTGYGTPAGLFGP-NCRHSLYPF 287 (361)
T ss_pred cCCCEEEEcCCCCCCCCCcCcCC----EEEEeccCCCCCCCCCCCchhhccccccCCCccc-CCCCcccCC
Confidence 467765 4666799999999877 232122222 11111 222 135677776 899999994
No 4
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=34.04 E-value=17 Score=25.88 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=6.7
Q ss_pred ccccCCCccceeeeeheeec
Q psy10697 224 LLDRNKTGVMGTFWKFARIG 243 (264)
Q Consensus 224 LLDrnKtGf~GVFWKaARIG 243 (264)
++++.++||+|+.-|-|+|-
T Consensus 29 Vi~~g~kGf~G~g~k~a~I~ 48 (52)
T PF14804_consen 29 VIEEGKKGFFGFGKKPAKIR 48 (52)
T ss_dssp EEE--B--------B-EEEE
T ss_pred EEEcCCCcEEeecceeEEEE
Confidence 67778999999888888873
No 5
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.15 E-value=50 Score=30.70 Aligned_cols=42 Identities=38% Similarity=0.550 Sum_probs=33.9
Q ss_pred eccCCCCCceeee--------------------ecceeeeEeecCcceecc-ceeehhhhhhc
Q psy10697 113 WTTPKTGDPVVMK--------------------HAGKCHWVTCGTSWYPLN-GIIYGLTAFLW 154 (264)
Q Consensus 113 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (264)
++.|+|-||||.- -++|-|.|.=|..-|-|. |.||..||||=
T Consensus 162 Yvg~etDDPVvvaT~E~ld~vg~~AGailGa~lg~~~~~~VrrG~p~~vlPg~VI~s~tafLN 224 (244)
T COG4053 162 YVGAETDDPVVVATVEELDDVGKLAGAILGALLGFDKLYFVRRGDPVNVLPGGVIYSMTAFLN 224 (244)
T ss_pred ccCCCCCCcEEEEehhhhhhcchhHHHHHHhhccCCceEEeecCCcccccCCceEEEEEeeec
Confidence 6789999999874 246789999998776664 58999999984
No 6
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=24.58 E-value=44 Score=26.43 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhccccccc
Q psy10697 203 LLTVIILLICTCTYLRSLF 221 (264)
Q Consensus 203 LLtVILLlICTCTYLR~~f 221 (264)
+++|+||+||-|..=|+.-
T Consensus 6 ll~vvll~~clC~lsrRvk 24 (74)
T PF05083_consen 6 LLAVVLLSACLCRLSRRVK 24 (74)
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 6889999999999877753
No 7
>PRK02913 hypothetical protein; Provisional
Probab=19.02 E-value=72 Score=27.92 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=23.5
Q ss_pred HHhhhcccccccCcccccCCCccc--eeeeeheeec
Q psy10697 210 LICTCTYLRSLFPSLLDRNKTGVM--GTFWKFARIG 243 (264)
Q Consensus 210 lICTCTYLR~~fPsLLDrnKtGf~--GVFWKaARIG 243 (264)
+..==+|+|. |.++.++ +||+ ++|+.-++|-
T Consensus 78 l~iYl~~iR~--PkllfK~-~GFf~an~fi~Y~~Ik 110 (150)
T PRK02913 78 LAIYIFFIRS--PKLLFKE-KGFFYANVFIEYSRIK 110 (150)
T ss_pred HHHHHHHHhc--hhhheec-cceEEeeeeeehHHhh
Confidence 3344578887 9999984 7887 8888877774
No 8
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=17.99 E-value=75 Score=23.88 Aligned_cols=14 Identities=7% Similarity=0.337 Sum_probs=10.8
Q ss_pred HHHHHHHhhhcccc
Q psy10697 205 TVIILLICTCTYLR 218 (264)
Q Consensus 205 tVILLlICTCTYLR 218 (264)
.-+++|+|+|.||=
T Consensus 75 ~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 75 FAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHh
Confidence 44678899999973
No 9
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=16.60 E-value=92 Score=22.27 Aligned_cols=15 Identities=60% Similarity=0.833 Sum_probs=12.9
Q ss_pred hHHHHHHHHHhhhcc
Q psy10697 202 SLLTVIILLICTCTY 216 (264)
Q Consensus 202 SLLtVILLlICTCTY 216 (264)
|++.+++|.|+||--
T Consensus 2 s~~~~ilLsiiT~GI 16 (75)
T PF14018_consen 2 SLLKVILLSIITCGI 16 (75)
T ss_pred cHHHHHHHHHHHHHH
Confidence 678899999999974
No 10
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=16.13 E-value=58 Score=26.48 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.7
Q ss_pred ccccceeeeeeEEEeeccee
Q psy10697 66 CTRQSELRFGTLVVTRGYDL 85 (264)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ 85 (264)
|.+...++-|..++|+||+|
T Consensus 48 ~~~~~~~~~G~~~~T~~~~L 67 (140)
T cd02905 48 IQTLGGCRTGEAKLTKGYNL 67 (140)
T ss_pred HHHhCCCCCCcEEEecCCCC
Confidence 55566789999999999986
Done!