Query psy10697
Match_columns 264
No_of_seqs 116 out of 161
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 16:17:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvl_A TRMI protein, hypotheti 26.9 32 0.0011 26.1 2.1 49 115-163 3-64 (248)
2 2d56_A Asabf; antibacterial pe 26.5 18 0.00063 26.0 0.7 10 89-98 38-47 (53)
3 4dyq_A Gene 1 protein; GP1, oc 12.1 50 0.0017 25.1 0.2 11 86-96 1-11 (140)
4 3ihx_A PR domain zinc finger p 11.6 47 0.0016 26.3 -0.1 34 216-251 16-51 (152)
5 2jra_A Protein RPA2121; domain 10.9 2.2E+02 0.0075 21.1 3.3 44 88-131 5-53 (67)
6 3gku_A Probable RNA-binding pr 10.1 86 0.0029 26.9 1.0 21 224-244 36-56 (225)
7 2lkt_A Retinoic acid receptor 8.7 1.5E+02 0.0052 21.8 1.7 20 115-134 7-26 (125)
8 1jvr_A HTLV-II MA, MA, human T 8.5 1.2E+02 0.004 25.2 1.1 14 39-52 49-62 (137)
9 3ner_A Cytochrome B5 type B; h 7.8 1.2E+02 0.0042 22.1 0.9 25 137-161 25-49 (92)
10 3lf5_A Cytochrome B5 reductase 7.3 1.4E+02 0.0048 21.6 1.0 25 137-161 21-45 (88)
No 1
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=26.85 E-value=32 Score=26.13 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=29.0
Q ss_pred cCCCCCceeeee--cceeeeEeecCcceeccce---------eehhh--hhhcCCCChhHHH
Q psy10697 115 TPKTGDPVVMKH--AGKCHWVTCGTSWYPLNGI---------IYGLT--AFLWNKPDCADFL 163 (264)
Q Consensus 115 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~c~d~~ 163 (264)
.-|.||.|++.. -++|..+.||..++=-+|. .||-. .++...|+..+..
T Consensus 3 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~~G~~~~~~~~~~p~~~~~~ 64 (248)
T 2yvl_A 3 SFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKINGFEVYRPTLEEII 64 (248)
T ss_dssp CCCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCCTTEEETTEEEECCCHHHHH
T ss_pred cCCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCCCCCEEEEEEEeCCCHHHHH
Confidence 357899999976 4556666777655544433 23322 2445566665555
No 2
>2d56_A Asabf; antibacterial peptide, cystine stabilized alpha-beta motif, antibiotic; NMR {Ascaris suum}
Probab=26.48 E-value=18 Score=25.99 Aligned_cols=10 Identities=70% Similarity=1.600 Sum_probs=8.4
Q ss_pred cCCCCCCccc
Q psy10697 89 DKKGGRPTCT 98 (264)
Q Consensus 89 ~~~~~~~~~~ 98 (264)
.|.||||||.
T Consensus 38 ~kr~~rPTCv 47 (53)
T 2d56_A 38 EKRGGRPTCV 47 (53)
T ss_dssp ECSSSCCEEE
T ss_pred eccCCCCCEE
Confidence 5889999994
No 3
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=12.11 E-value=50 Score=25.10 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=1.6
Q ss_pred eeccCCCCCCc
Q psy10697 86 MLSDKKGGRPT 96 (264)
Q Consensus 86 ~~~~~~~~~~~ 96 (264)
|-+.+|+||||
T Consensus 1 ma~~~k~GRPt 11 (140)
T 4dyq_A 1 MATEPKAGRPS 11 (140)
T ss_dssp ---------CC
T ss_pred CCCCCCCCCCC
Confidence 55678899996
No 4
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=11.58 E-value=47 Score=26.32 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=22.1
Q ss_pred ccccccCcccccCCCccceeeeeheee--cCCcchHHH
Q psy10697 216 YLRSLFPSLLDRNKTGVMGTFWKFARI--GERKSPYVS 251 (264)
Q Consensus 216 YLR~~fPsLLDrnKtGf~GVFWKaARI--GERLSPYVS 251 (264)
+.+.-.|.-|.-++.| .|||-| ..| |+|+=||+.
T Consensus 16 rA~~SLP~~L~i~~~g-~GVfA~-~~IpkGt~fGPy~G 51 (152)
T 3ihx_A 16 RARASLPLVLYIDRFL-GGVFSK-RRIPKRTQFGPVEG 51 (152)
T ss_dssp HHHHTSCTTEEECTTT-CSEEES-SCBCSSCEECCCCS
T ss_pred hHhhcCCcceEEeecC-CeEEEC-ceecCCCEEEeecc
Confidence 4455567654444566 799987 455 788777753
No 5
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=10.89 E-value=2.2e+02 Score=21.05 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=31.3
Q ss_pred ccCCCCCCcccccccccccee-----EEeeeccCCCCCceeeeecceee
Q psy10697 88 SDKKGGRPTCTPLVGTSHQKV-----CISTWTTPKTGDPVVMKHAGKCH 131 (264)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 131 (264)
||++|+.|+-.|...+.-+.+ +++.=.--..+..|.+.|.|...
T Consensus 5 ~~~~~~d~~~~~s~p~~~r~v~~~~~~i~S~~Ll~g~~ev~I~H~G~~Y 53 (67)
T 2jra_A 5 SDRLGADPTQAASSPGGARAVSIVGNQIDSRELFTVDREIVIAHGDDRY 53 (67)
T ss_dssp CCCCCCCCCCCCCCCCSEEEEEEETTEEEHHHHTTSSSEEEEEETTEEE
T ss_pred chhccCCCCCCCCCCccccccccccCeecHHHHhCCCCEEEEEeCCeEE
Confidence 789999999887766655553 34444445667888999988753
No 6
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=10.10 E-value=86 Score=26.90 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=14.8
Q ss_pred ccccCCCccceeeeeheeecC
Q psy10697 224 LLDRNKTGVMGTFWKFARIGE 244 (264)
Q Consensus 224 LLDrnKtGf~GVFWKaARIGE 244 (264)
+++..++||+|+.-|-|+|--
T Consensus 36 Vleeg~kGffGiG~k~a~V~v 56 (225)
T 3gku_A 36 IVEKGSAGFLGIGSKPAIIRA 56 (225)
T ss_dssp EEECCBCCC--CCCBCEEEEE
T ss_pred EEecCCCccccccCceEEEEE
Confidence 677778999998888888743
No 7
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=8.68 E-value=1.5e+02 Score=21.82 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=16.8
Q ss_pred cCCCCCceeeeecceeeeEe
Q psy10697 115 TPKTGDPVVMKHAGKCHWVT 134 (264)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~ 134 (264)
.||.||-+.+...+-=||--
T Consensus 7 ep~pGDlI~~~r~~Y~H~gI 26 (125)
T 2lkt_A 7 EPKPGDLIEIFRLGYEHWAL 26 (125)
T ss_dssp CCCTTCEEEEECSSSCEEEE
T ss_pred CCCCCCEEEEeCCCccEEEE
Confidence 59999999998888888843
No 8
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=8.45 E-value=1.2e+02 Score=25.16 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.3
Q ss_pred HHHHHhhcCccccc
Q psy10697 39 YLLHEAIRTPVWNT 52 (264)
Q Consensus 39 ~~~~~~~~~~~~~~ 52 (264)
-.|+-|+.||||-.
T Consensus 49 ~fLklAl~TPvWln 62 (137)
T 1jvr_A 49 RFLKLALKTPIWLN 62 (137)
T ss_dssp HHHHHHHTCTTSTT
T ss_pred HHHHHHhcCccccc
Confidence 35788999999953
No 9
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=7.77 E-value=1.2e+02 Score=22.06 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=19.8
Q ss_pred CcceeccceeehhhhhhcCCCChhH
Q psy10697 137 TSWYPLNGIIYGLTAFLWNKPDCAD 161 (264)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~c~d 161 (264)
.-|.-++|.+|=+|.|+-.-|+=.+
T Consensus 25 ~~wv~i~g~VYDvT~f~~~HPGG~~ 49 (92)
T 3ner_A 25 ELWLVIHGRVYDVTRFLNEHPGGEE 49 (92)
T ss_dssp EEEEEETTEEEECGGGTTTCTTCSH
T ss_pred CEEEEECCEEEEcccccccCCCHHH
Confidence 4477789999999999987777443
No 10
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=7.32 E-value=1.4e+02 Score=21.57 Aligned_cols=25 Identities=20% Similarity=0.658 Sum_probs=19.8
Q ss_pred CcceeccceeehhhhhhcCCCChhH
Q psy10697 137 TSWYPLNGIIYGLTAFLWNKPDCAD 161 (264)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~c~d 161 (264)
.-|.-++|.+|=+|.|+-.-|+=.+
T Consensus 21 ~~wv~i~g~VYDvT~f~~~HPGG~~ 45 (88)
T 3lf5_A 21 DCWICIRGFVYNVSPYMEYHPGGED 45 (88)
T ss_dssp EEEEEETTEEEECGGGTTTCTTCHH
T ss_pred CEEEEECCEEEECccchhhCcChhh
Confidence 3477789999999999987777443
Done!