RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10697
         (264 letters)



>gnl|CDD|203532 pfam06842, DUF1242, Protein of unknown function (DUF1242).  This
           family consists of a number of eukaryotic proteins of
           around 72 residues in length. The function of this
           family is unknown.
          Length = 36

 Score = 62.6 bits (153), Expect = 2e-13
 Identities = 30/36 (83%), Positives = 32/36 (88%), Gaps = 1/36 (2%)

Query: 203 LLTVIILLICTCTYLRSLFPSLLDRNK-TGVMGTFW 237
           LLTVI+LLICTCTYLR LFPSLLDRNK TG +G FW
Sbjct: 1   LLTVILLLICTCTYLRQLFPSLLDRNKKTGFLGFFW 36


>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
           cellular Activities) superfamily represents an ancient
           group of ATPases belonging to the ASCE (for additional
           strand, catalytic E) division of the P-loop NTPase fold.
           The ASCE division also includes ABC, RecA-like,
           VirD4-like, PilT-like, and SF1/2 helicases. Members of
           the AAA+ ATPases function as molecular chaperons, ATPase
           subunits of proteases, helicases, or nucleic-acid
           stimulated ATPases. The AAA+ proteins contain several
           distinct features in addition to the conserved
           alpha-beta-alpha core domain structure and the Walker A
           and B motifs of the P-loop NTPases.
          Length = 151

 Score = 28.7 bits (64), Expect = 2.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 170 AQKLRKDILF---IGIFRRGAQNYLSKMLALFNFQSLLTVIILLICTCTY--LRSLFPSL 224
           A+K +  +LF   I    RGAQN L ++L   N   +    + +I       L  L  +L
Sbjct: 80  AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRAL 139

Query: 225 LDR 227
            DR
Sbjct: 140 YDR 142


>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
           activities (AAA).  AAA family proteins often perform
           chaperone-like functions that assist in the assembly,
           operation, or disassembly of protein complexes.
          Length = 131

 Score = 28.3 bits (64), Expect = 2.4
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 170 AQKLRKDILFI----GIFRRGAQNYLSKMLALFNFQSLLTVI---------ILLICTCTY 216
           A+KL   ++FI     +         S+   + N   LLT +         +++I     
Sbjct: 53  AKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQ--LLTELDGFTSSLSKVIVIAATNR 110

Query: 217 LRSLFPSLL 225
              L P+LL
Sbjct: 111 PDKLDPALL 119


>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase.  This is a
           family of putative methyltransferases. The aligned
           region contains the GXGXG S-AdoMet binding site
           suggesting a putative methyltransferase activity.
          Length = 198

 Score = 28.0 bits (63), Expect = 3.7
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 168 LSAQ-KLRKDILFIGI--FRRGAQNYLSKMLALFNFQSLLTVIILLICTCTYLRSLFP 222
           L A  K   D LFIGI     G    L K++AL   Q+L    IL       L +LFP
Sbjct: 35  LVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLR---ILCGDAMKLLPNLFP 89


>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed.
          Length = 276

 Score = 27.2 bits (61), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 241 RIGERKSPYVSVFCLGLAMAS 261
            IG RK+ YV+   L +A+A+
Sbjct: 196 LIGVRKALYVAAAFLLVAVAA 216


>gnl|CDD|198356 cd07778, FGGY_L-RBK_like, L-ribulokinase-like proteins; a subfamily
           of the FGGY family of carbohydrate kinases.  This
           subfamily is composed of a group of putative bacterial
           L-ribulokinases (RBK; EC 2.7.1.16) and similar proteins.
           L-RBK catalyzes the MgATP-dependent phosphorylation of a
           variety of sugar substrates. Members of this subfamily
           belong to the FGGY family of carbohydrate kinases, the
           monomers of which contain two large domains, which are
           separated by a deep cleft that forms the active site.
           This model includes both the N-terminal domain, which
           adopts a ribonuclease H-like fold, and the structurally
           related C-terminal domain.
          Length = 466

 Score = 27.3 bits (61), Expect = 9.7
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 1/17 (5%)

Query: 114 TTPKTGDPVVMKHAGKC 130
           TTP  G PV M HA  C
Sbjct: 296 TTP-DGSPVAMVHANNC 311


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.140    0.455 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,335,797
Number of extensions: 1222105
Number of successful extensions: 1202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1200
Number of HSP's successfully gapped: 9
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.4 bits)