RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10697
         (264 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.036
 Identities = 22/175 (12%), Positives = 57/175 (32%), Gaps = 44/175 (25%)

Query: 76  TLVVTRGYDLMLSDKKGGRPTCTPLVG------TSHQKVCI-STWTTPKTGD-PVVMKHA 127
            L+ TR     ++D      T    +       T  +   +   +   +  D P  +   
Sbjct: 268 ILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--- 322

Query: 128 GKCHWVTCGTSWYPLNGIIYGLTAFL---------WNKPDCADFLELLQLSAQKLRKDI- 177
                    T+  P    +  +   +         W   +C     +++ S   L     
Sbjct: 323 -------LTTN--PR--RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 178 --LF--IGIFRRGAQNYLSKMLALFNFQSLLTVIILLICTCTYLRSLFPSLLDRN 228
             +F  + +F   A +  + +L+L  F  + + +++++      +    SL+++ 
Sbjct: 372 RKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKL--HKY---SLVEKQ 420


>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide
           biosynthesis, transcriptional attenuation, RNA-binding
           protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
          Length = 181

 Score = 26.5 bits (59), Expect = 6.7
 Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 175 KDILFIGIFRRGAQNYLSKMLA 196
           + +  +GI  RG    L+  +A
Sbjct: 32  EGLALVGIHTRGI--PLAHRIA 51


>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
           regulation, attenuation protein, RNA-binding P
           pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
           c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
          Length = 181

 Score = 26.5 bits (59), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 175 KDILFIGIFRRGAQNYLSKMLA 196
            + + +GI  RG   YL+K LA
Sbjct: 32  NNCILVGIKTRGI--YLAKRLA 51


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.455 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,043,372
Number of extensions: 226827
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 7
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.9 bits)