RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10697
         (264 letters)



>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal
           domain {Thermus aquaticus [TaxId: 271]}
          Length = 74

 Score = 24.5 bits (54), Expect = 4.2
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 164 ELLQLSAQKLRKDILFIGIF-RRG 186
            L Q++A ++RKD+ + G +  RG
Sbjct: 33  GLAQVTAFQVRKDLSYFGSYGTRG 56


>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
           9615]}
          Length = 227

 Score = 25.4 bits (55), Expect = 6.6
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 80  TRGYDLMLSDKKGGRPTCTPLVGTSHQKVCISTWTTPKTGDPVVMKHAGKCHWVTCGTSW 139
           T  +   +++ +    + + L+G        +     K        +  +  W +    +
Sbjct: 98  TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF 157

Query: 140 YPL-----NGIIYGLTAFLWNKPDCADFLE 164
             +     N +  G T  L  K + +D+LE
Sbjct: 158 SVIADPRGNTLGRGTTITLVLKEEASDYLE 187


>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 329

 Score = 25.4 bits (54), Expect = 7.6
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 120 DPVVMKHAGKCHWVTCGTSWYPLNGIIYGLTAFLWNKPDCADFLELLQLSAQKLRKDILF 179
             +      +  +V CG+S+     I Y     L  +       E+       L +  L 
Sbjct: 32  SEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLA 91

Query: 180 IGIFRRG 186
               R G
Sbjct: 92  FLFSRTG 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.455 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,018,174
Number of extensions: 46052
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)