BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy107
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 70/99 (70%)
Query: 14 SFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYE 73
++ G+F F+ W GEWVEV++DDRLPT NG+L FL S ++FW LLEKAYAKL+G YE
Sbjct: 114 NYAGIFHFQFWQYGEWVEVVIDDRLPTKNGQLLFLHSEQGNEFWSALLEKAYAKLNGXYE 173
Query: 74 ALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLL 112
AL G+ ++G D TGGI+E +++ P + +++ K L
Sbjct: 174 ALAGGSTVEGFEDFTGGISEFYDLKKPPANLYQIIRKAL 212
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
G S + G+F F+LW GEWV+V+VDD LPT +GKL F+ S ++FW LLEKAYAK
Sbjct: 128 GQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAK 187
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLK 127
++GSYEAL G + D TGG+TE +++ P+ +++ K L+ + S +
Sbjct: 188 VNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCS----IN 243
Query: 128 FSDFKDL 134
SD +DL
Sbjct: 244 ISDIRDL 250
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 86 DLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAF 145
+L + + ++ D + G ++ M M++ TG+L F +FK L ++K WQ +
Sbjct: 751 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIY 810
Query: 146 KNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSI 205
K +++G G+ LN + S++ RY + G + F +F+S ++ L
Sbjct: 811 KRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDA 870
Query: 206 AF 207
F
Sbjct: 871 MF 872
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%)
Query: 95 ISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
IS +D ++G L M M+ G G+L +F L ++ + T F+ +K+G
Sbjct: 563 ISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSG 622
Query: 155 IXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
G++L ++ V+ R+ + + F +FV ++ L I F I
Sbjct: 623 SMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI 677
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 14 SFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYE 73
++ G+F F+ W GEWVEV+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YE
Sbjct: 134 NYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYE 193
Query: 74 ALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLD 113
AL G +G D TGGI E +R+ P + +++ K L+
Sbjct: 194 ALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALE 233
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 51/115 (44%)
Query: 95 ISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
++ R+D S G + M ++ G+G+L +F L ++ +Q ++ +++G
Sbjct: 561 LAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSG 620
Query: 155 IXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
G++L ++ V+ R+ + + F +FV ++ L I F I
Sbjct: 621 TMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI 675
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 14 SFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYE 73
++ G+F F+ W GEWVEV+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YE
Sbjct: 134 NYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYE 193
Query: 74 ALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLD 113
AL G +G D TGGI E +R+ P + +++ K L+
Sbjct: 194 ALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALE 233
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 51/115 (44%)
Query: 95 ISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
++ R+D S G + M ++ G+G+L +F L ++ +Q ++ +++G
Sbjct: 561 LAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSG 620
Query: 155 IXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
G++L ++ V+ R+ + + F +FV ++ L I F I
Sbjct: 621 TMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI 675
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 14 SFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYE 73
++ G+F F+ W GEWVEV+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YE
Sbjct: 134 NYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYE 193
Query: 74 ALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLD 113
AL G +G D TGGI E +R+ P + +++ K L+
Sbjct: 194 ALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALE 233
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 51/115 (44%)
Query: 95 ISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
++ R+D S G + M ++ G+G+L +F L ++ +Q ++ +++G
Sbjct: 561 LAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSG 620
Query: 155 IXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
G++L ++ V+ R+ + + F +FV ++ L I F I
Sbjct: 621 TMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI 675
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%)
Query: 13 PSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSY 72
P + G+F F+ W EW++V++DDRLPT +L FL S ++FW LLEKAYAKL+GSY
Sbjct: 117 PGYAGIFHFQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSY 176
Query: 73 EALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLL 112
EALK G+ ++ + D TGG+ E+ ++ P + +L K L
Sbjct: 177 EALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKAL 216
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%)
Query: 13 PSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSY 72
P + G+F F+ W EW++V++DDRLPT +L FL S ++FW LLEKAYAKL+GSY
Sbjct: 118 PGYAGIFHFQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSY 177
Query: 73 EALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLL 112
EALK G+ ++ + D TGG+ E+ ++ P + +L K L
Sbjct: 178 EALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKAL 217
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 14 SFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYE 73
++ G+F F+ W GEWVEV+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YE
Sbjct: 116 NYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYE 175
Query: 74 ALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLD 113
AL G +G D TGGI E +R+ P + +++ K L+
Sbjct: 176 ALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALE 215
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
G S + G+F F+LW GEWV+V+VDD LPT +GKL F+ S ++FW LLEKAYAK
Sbjct: 113 GQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAK 172
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLK 127
++GSYEAL G + D TGG+TE +++ P+ +++ K L+ + S +
Sbjct: 173 VNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCS----IN 228
Query: 128 FSDFKDL 134
SD +DL
Sbjct: 229 ISDIRDL 235
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
G S + G+F F+LW GEWV+V+VDD LPT +GKL F+ S ++FW LLEKAYAK
Sbjct: 113 GQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAK 172
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLK 127
++GSYEAL G + D TGG+TE +++ P+ +++ K L+ + S +
Sbjct: 173 VNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCS----IN 228
Query: 128 FSDFKDL 134
SD +DL
Sbjct: 229 ISDIRDL 235
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
G S + G+F F+LW GEWV+V+VDD LP +GKL F+ S ++FW LLEKAYAK
Sbjct: 129 GQSFQNGYAGIFHFQLWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAK 188
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLD 113
++GSYEAL G+ +G D TGG+TE +R+ P+ +++ K L+
Sbjct: 189 VNGSYEALSGGSTSEGFEDFTGGVTEWYELRKAPSDLYQIILKALE 234
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 66/99 (66%)
Query: 14 SFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYE 73
++ G+F F+ W GEWVEV+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YE
Sbjct: 133 NYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYE 192
Query: 74 ALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLL 112
AL G +G D TGGI E +++ P + +++ K L
Sbjct: 193 ALSGGATTEGFEDFTGGIAEWYELKKPPPNLFKIIQKAL 231
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 50/115 (43%)
Query: 95 ISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
++ RQD S G + M +++ G+G+L +F L ++ +Q ++ +++G
Sbjct: 560 LAKRQDIKSDGFSIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSG 619
Query: 155 IXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
G+++ ++ V+ R+ + F +FV ++ L F I
Sbjct: 620 TMNSYEMRKALEEAGFKMPCQLHQVIVARFADDQLIIDFDNFVRCLVRLETLFKI 674
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 70/106 (66%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
G S + G+F F+LW GEWV+V+VDD LP +GKL F+ S ++FW LLEKAYAK
Sbjct: 106 GQSFQNGYAGIFHFQLWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAK 165
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLD 113
++GSYEAL G+ + D TGG+TE +R+ P+ +++ K L+
Sbjct: 166 VNGSYEALSGGSTSEAFEDFTGGVTEWYELRKAPSDLYQIILKALE 211
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 86 DLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAF 145
+L + + ++ D + G ++ M M++ TG+L F +FK L ++K WQ +
Sbjct: 24 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIY 83
Query: 146 KNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSI 205
K +++G G+ LN + S++ RY + G + F +F+S ++ L
Sbjct: 84 KRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDA 143
Query: 206 AF 207
F
Sbjct: 144 MF 145
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 86 DLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAF 145
+L + + ++ D + G ++ M M++ TG+L F +FK L ++K WQ +
Sbjct: 24 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIY 83
Query: 146 KNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSI 205
K +++G G+ LN + S++ RY + G + F +F+S ++ L
Sbjct: 84 KQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDA 143
Query: 206 AF 207
F
Sbjct: 144 MF 145
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 86 DLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAF 145
+L + + ++ D + G ++ M M++ TG+L F +FK L ++K WQ +
Sbjct: 35 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIY 94
Query: 146 KNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSI 205
K +++G G+ LN + S++ RY + G + F +F+S ++ L
Sbjct: 95 KRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDA 154
Query: 206 AF 207
F
Sbjct: 155 MF 156
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 86 DLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAF 145
+L + + ++ D + G ++ M M++ TG+L F +FK L ++K WQ +
Sbjct: 31 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIY 90
Query: 146 KNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSI 205
K +++G G+ LN + S++ RY + G + F +F+S ++ L
Sbjct: 91 KRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDA 150
Query: 206 AF 207
F
Sbjct: 151 MF 152
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLN 173
M M++ TG+L F +FK L ++K WQ +K +++G G+ LN
Sbjct: 63 MVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLN 122
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAF 207
+ S++ RY + G + F +F+S ++ L F
Sbjct: 123 QHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMF 156
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%)
Query: 86 DLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAF 145
+L + + ++ D + G ++ M M++ TG+L F +FK L ++K WQ +
Sbjct: 35 ELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIY 94
Query: 146 KNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSI 205
K +++G G+ LN + +++ RY + G + F +F+S ++ L
Sbjct: 95 KQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDA 154
Query: 206 AF 207
F
Sbjct: 155 MF 156
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLN 173
M ++ TG++ F+ FK+L +L W+ F ++ +G +GY+L+
Sbjct: 45 MIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLS 104
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHL 203
+ L+ + RY K+G + F D+V+ + L
Sbjct: 105 PQTLTTIVKRY-SKNGRIFFDDYVACCVKL 133
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLN 173
M ++ TG++ F+ FK+L +L W+ F ++ +G +GY+L+
Sbjct: 45 MIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLS 104
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHL 203
+ L+ + RY K+G + F D+V+ + L
Sbjct: 105 PQTLTTIVKRY-SKNGRIFFDDYVACCVKL 133
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLN 173
M ++ +G + F++FK+L L W+ F + +++G +G++LN
Sbjct: 47 MVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLN 106
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHL 203
+ ++ + RY G + F D+++ + L
Sbjct: 107 PQTVNSIAKRY-STSGKITFDDYIACCVKL 135
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLN 173
M ++ +G + F++FK+L L W+ F + +++G +G++L+
Sbjct: 78 MVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLS 137
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHL 203
+ ++ + RY +G + F D+++ + L
Sbjct: 138 PQAVNSIAKRY-STNGKITFDDYIACCVKL 166
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLN 173
M ++ +G + F++FK+L L W+ F + +++G +G++L+
Sbjct: 78 MVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISLDTDRSGTVDPQELQKALTTMGFRLS 137
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHL 203
+ ++ + RY +G + F D+++ + L
Sbjct: 138 PQAVNSIAKRY-STNGKITFDDYIACCVKL 166
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYM 185
+ FS+F + + WQ F+ + ++ +G+ GY+L+ + +L ++
Sbjct: 61 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGAGYRLSDQFHDILIRKFD 120
Query: 186 RK-DGTLRFGDFVSSVLHLS 204
R+ G + F DF+ + L
Sbjct: 121 RQGRGQIAFDDFIQGCIVLQ 140
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYM 185
+ FS+F + + WQ F+ + ++ +G+ GY+L+ + +L ++
Sbjct: 61 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD 120
Query: 186 RK-DGTLRFGDFVSSVLHLS 204
R+ G + F DF+ + L
Sbjct: 121 RQGRGQIAFDDFIQGCIVLQ 140
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYM 185
+ FS+F + + WQ F+ + ++ +G+ GY+L+ + +L ++
Sbjct: 80 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD 139
Query: 186 RK-DGTLRFGDFVSSVLHLS 204
R+ G + F DF+ + L
Sbjct: 140 RQGRGQIAFDDFIQGCIVLQ 159
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYM 185
+ FS+F + + WQ F+ + ++ +G+ GY+L+ + +L ++
Sbjct: 58 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD 117
Query: 186 RK-DGTLRFGDFVSSVLHLS 204
R+ G + F DF+ + L
Sbjct: 118 RQGRGQIAFDDFIQGCIVLQ 137
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYM 185
+ FS+F + + WQ F+ + ++ +G+ GY+L+ + +L ++
Sbjct: 57 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD 116
Query: 186 RK-DGTLRFGDFVSSVLHLS 204
R+ G + F DF+ + L
Sbjct: 117 RQGRGQIAFDDFIQGCIVLQ 136
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYM 185
+ FS+F + + WQ F+ + ++ +G+ GY+L+ + +L ++
Sbjct: 79 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD 138
Query: 186 RK-DGTLRFGDFVSSVLHL 203
R+ G + F DF+ + L
Sbjct: 139 RQGRGQIAFDDFIQGCIVL 157
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGIXXXXXXXXXXXXVGYQLNTEVLSVLTLRYM 185
+ FS+F + + WQ F+ + ++ +G+ GY+L+ + +L ++
Sbjct: 58 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALS--GYRLSDQFHDILIRKFD 115
Query: 186 RK-DGTLRFGDFVSSVLHLS 204
R+ G + F DF+ + L
Sbjct: 116 RQGRGQIAFDDFIQGCIVLQ 135
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 54 DQFWPGLLEKAYAKLHGSYEALKYGTML-----DGLADLTGGI-TESISIRQDPTSSGRL 107
D+ P + E + +H S A+ + T L L+ ++G I E I + + P G
Sbjct: 718 DELPPLISE---SDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGA 774
Query: 108 LNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTK 150
L+ +LD + + +GT L + D ++ Y Q+ H +
Sbjct: 775 LSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQ 817
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 54 DQFWPGLLEKAYAKLHGSYEALKYGTML-----DGLADLTGGI-TESISIRQDPTSSGRL 107
D+ P + E + +H S A+ + T L L+ ++G I E I + + P G
Sbjct: 695 DELPPLISE---SDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGA 751
Query: 108 LNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTK 150
L+ +LD + + +GT L + D ++ Y Q+ H +
Sbjct: 752 LSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQ 794
>pdb|1MHZ|D Chain D, Methane Monooxygenase Hydroxylase
pdb|1MHY|D Chain D, Methane Monooxygenase Hydroxylase
Length = 521
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 60 LLEKAYAKLHGSYEALKYGTMLDGLADLTGG 90
++ K YA++ + + ++GT+LDGL L G
Sbjct: 57 VIAKEYARMEAAKDERQFGTLLDGLTRLGAG 87
>pdb|3G7Y|A Chain A, Crystal Structure Of Oxidized Ost6l
pdb|3G9B|A Chain A, Crystal Structure Of Reduced Ost6l
pdb|3GA4|A Chain A, Crystal Structure Of Ost6l (Photoreduced Form)
Length = 178
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Query: 186 RKDGTLRFGDFVSSVLHLSI----AFNI 209
+ TL+FGDF++ +L++SI AFN+
Sbjct: 137 NAENTLQFGDFLAKILNISITVPQAFNV 164
>pdb|2LBF|A Chain A, Solution Structure Of The Dimerization Domain Of Human
Ribosomal Protein P1P2 HETERODIMER
Length = 69
Score = 26.9 bits (58), Expect = 7.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 32 VLVDDRLPTVNGKLAFL---QSVHSDQFWPGLLEKAYAKLH 69
+L DD + K+ L V+ + FWPGL KA A ++
Sbjct: 15 ILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVN 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,002,521
Number of Sequences: 62578
Number of extensions: 220828
Number of successful extensions: 370
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 43
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)