Query psy107
Match_columns 209
No_of_seqs 278 out of 2312
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 16:22:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00230 CysPc Calpain-like 100.0 5.7E-31 1.2E-35 219.2 4.7 190 13-205 97-306 (318)
2 cd00044 CysPc Calpains, domain 100.0 4.4E-30 9.5E-35 214.0 4.4 188 13-204 105-312 (315)
3 PF00648 Peptidase_C2: Calpain 99.9 1.3E-29 2.9E-34 209.7 0.3 188 13-203 84-292 (298)
4 KOG0045|consensus 99.9 3.5E-28 7.7E-33 215.2 7.2 197 7-204 107-326 (612)
5 KOG0037|consensus 99.9 7.6E-25 1.6E-29 167.6 10.0 123 72-208 71-194 (221)
6 COG5126 FRQ1 Ca2+-binding prot 99.8 5.4E-18 1.2E-22 126.1 10.5 128 59-202 20-156 (160)
7 KOG0027|consensus 99.7 1.2E-17 2.7E-22 125.0 10.5 129 59-202 8-149 (151)
8 KOG0028|consensus 99.6 3.1E-14 6.8E-19 104.3 10.2 128 60-202 34-170 (172)
9 KOG0030|consensus 99.5 4.1E-14 9E-19 101.3 7.7 128 59-201 11-150 (152)
10 PTZ00184 calmodulin; Provision 99.5 2.4E-13 5.1E-18 100.7 10.2 127 60-201 12-147 (149)
11 PTZ00183 centrin; Provisional 99.5 3.7E-13 7.9E-18 100.8 10.3 129 59-202 17-154 (158)
12 cd05022 S-100A13 S-100A13: S-1 99.3 2.5E-12 5.4E-17 87.4 6.6 70 137-206 6-79 (89)
13 cd05027 S-100B S-100B: S-100B 99.3 1.8E-11 4E-16 83.2 7.6 71 137-207 6-84 (88)
14 KOG0031|consensus 99.2 2.8E-10 6.1E-15 83.1 11.0 123 60-201 33-164 (171)
15 PF13499 EF-hand_7: EF-hand do 99.2 4.3E-11 9.4E-16 76.8 6.2 61 140-200 1-66 (66)
16 cd05029 S-100A6 S-100A6: S-100 99.1 2.3E-10 5E-15 77.7 7.9 71 137-207 8-84 (88)
17 cd05025 S-100A1 S-100A1: S-100 99.1 2.3E-10 5E-15 78.5 7.6 69 138-206 8-84 (92)
18 COG5126 FRQ1 Ca2+-binding prot 99.1 1.8E-10 3.9E-15 86.0 7.6 67 136-202 17-83 (160)
19 cd05031 S-100A10_like S-100A10 99.1 3E-10 6.6E-15 78.2 7.6 69 138-206 7-83 (94)
20 KOG0027|consensus 99.1 2.9E-10 6.3E-15 85.1 8.0 66 138-203 7-73 (151)
21 cd05026 S-100Z S-100Z: S-100Z 99.1 3.5E-10 7.6E-15 77.7 7.3 71 137-207 8-86 (93)
22 smart00027 EH Eps15 homology d 99.1 4.8E-10 1E-14 77.5 7.6 67 138-206 9-76 (96)
23 cd00052 EH Eps15 homology doma 99.0 6.2E-10 1.4E-14 71.3 6.3 63 142-206 2-65 (67)
24 KOG0036|consensus 99.0 2.6E-09 5.7E-14 89.3 10.2 91 111-201 53-145 (463)
25 cd00213 S-100 S-100: S-100 dom 99.0 1.9E-09 4.1E-14 73.2 6.6 68 137-204 6-81 (88)
26 KOG0034|consensus 98.9 3.3E-09 7.2E-14 81.6 7.9 91 112-202 69-175 (187)
27 PF13833 EF-hand_8: EF-hand do 98.9 6.2E-09 1.3E-13 64.0 7.0 51 152-202 1-53 (54)
28 cd05023 S-100A11 S-100A11: S-1 98.9 6.8E-09 1.5E-13 70.6 7.5 71 137-207 7-85 (89)
29 PF14658 EF-hand_9: EF-hand do 98.9 7.3E-09 1.6E-13 65.6 6.8 60 143-202 2-64 (66)
30 KOG0028|consensus 98.9 1.2E-08 2.5E-13 75.2 7.5 62 140-201 34-96 (172)
31 KOG0044|consensus 98.8 1.2E-08 2.6E-13 78.7 7.8 92 111-202 66-175 (193)
32 cd00051 EFh EF-hand, calcium b 98.8 2.4E-08 5.1E-13 62.0 6.5 60 141-200 2-62 (63)
33 KOG0031|consensus 98.7 6.9E-08 1.5E-12 70.7 6.9 64 136-202 29-92 (171)
34 PTZ00183 centrin; Provisional 98.6 2.2E-07 4.7E-12 69.4 8.9 97 106-202 14-118 (158)
35 cd05030 calgranulins Calgranul 98.6 9.8E-08 2.1E-12 64.8 6.3 70 138-207 7-84 (88)
36 PTZ00184 calmodulin; Provision 98.5 9.2E-07 2E-11 65.1 9.5 96 107-202 9-112 (149)
37 KOG0041|consensus 98.5 4.2E-07 9.1E-12 69.5 6.7 73 128-202 90-163 (244)
38 KOG0038|consensus 98.5 7.3E-07 1.6E-11 64.9 7.4 89 114-202 76-177 (189)
39 KOG0030|consensus 98.5 3.7E-07 8E-12 65.8 5.5 66 139-204 11-79 (152)
40 PLN02964 phosphatidylserine de 98.5 7.4E-07 1.6E-11 80.3 8.6 72 111-182 181-272 (644)
41 cd00252 SPARC_EC SPARC_EC; ext 98.4 6.8E-07 1.5E-11 63.7 5.8 61 139-203 48-109 (116)
42 PF13405 EF-hand_6: EF-hand do 98.4 2.9E-07 6.3E-12 49.9 2.5 30 140-169 1-31 (31)
43 PLN02964 phosphatidylserine de 98.4 1.1E-06 2.3E-11 79.2 7.2 96 106-202 140-243 (644)
44 PF00036 EF-hand_1: EF hand; 98.3 3.9E-07 8.4E-12 48.5 2.4 29 140-168 1-29 (29)
45 KOG0377|consensus 98.2 8.6E-06 1.9E-10 69.2 9.5 69 135-203 543-616 (631)
46 PF13499 EF-hand_7: EF-hand do 98.2 1.1E-06 2.3E-11 56.1 3.1 55 111-165 2-66 (66)
47 KOG0044|consensus 98.1 1.9E-05 4.1E-10 61.0 7.9 88 120-207 38-133 (193)
48 cd05024 S-100A10 S-100A10: A s 98.0 3.4E-05 7.4E-10 52.3 7.7 69 138-207 7-81 (91)
49 KOG0037|consensus 97.9 4.7E-05 1E-09 59.2 6.8 63 141-203 59-123 (221)
50 cd05026 S-100Z S-100Z: S-100Z 97.8 5.2E-05 1.1E-09 51.9 5.0 67 102-168 3-82 (93)
51 KOG2643|consensus 97.7 0.00012 2.5E-09 62.4 7.1 87 119-205 209-317 (489)
52 smart00027 EH Eps15 homology d 97.7 7.3E-05 1.6E-09 51.4 5.0 69 107-175 8-85 (96)
53 PF13202 EF-hand_5: EF hand; P 97.7 2.4E-05 5.2E-10 40.0 1.9 25 141-165 1-25 (25)
54 cd05022 S-100A13 S-100A13: S-1 97.7 8.3E-05 1.8E-09 50.5 4.9 65 104-168 3-76 (89)
55 KOG4223|consensus 97.7 4.2E-05 9.1E-10 62.7 3.9 87 113-199 204-302 (325)
56 cd05023 S-100A11 S-100A11: S-1 97.7 9.7E-05 2.1E-09 50.2 5.1 65 104-168 4-81 (89)
57 KOG0036|consensus 97.6 0.0002 4.3E-09 60.7 7.2 62 140-201 15-78 (463)
58 cd05025 S-100A1 S-100A1: S-100 97.6 0.00011 2.3E-09 50.2 4.8 65 104-168 4-81 (92)
59 cd00213 S-100 S-100: S-100 dom 97.6 0.00011 2.3E-09 49.6 4.6 64 105-168 4-80 (88)
60 PF12763 EF-hand_4: Cytoskelet 97.6 0.00064 1.4E-08 47.5 8.4 64 139-205 10-74 (104)
61 PF00036 EF-hand_1: EF hand; 97.5 0.00018 4E-09 38.1 3.7 28 176-203 1-29 (29)
62 cd05031 S-100A10_like S-100A10 97.5 9.2E-05 2E-09 50.7 3.2 65 106-170 5-82 (94)
63 cd00051 EFh EF-hand, calcium b 97.5 0.00017 3.7E-09 44.0 3.8 53 113-165 4-62 (63)
64 PF13833 EF-hand_8: EF-hand do 97.5 0.00027 5.9E-09 43.0 4.5 45 123-167 2-53 (54)
65 cd00052 EH Eps15 homology doma 97.4 0.00024 5.2E-09 44.9 4.0 54 114-167 4-61 (67)
66 cd05027 S-100B S-100B: S-100B 97.4 0.00039 8.5E-09 47.1 4.9 65 104-168 3-80 (88)
67 KOG0040|consensus 97.4 0.00034 7.4E-09 67.3 6.0 63 140-202 2254-2324(2399)
68 cd00252 SPARC_EC SPARC_EC; ext 97.3 0.00027 5.8E-09 50.4 3.5 58 108-165 47-106 (116)
69 KOG4223|consensus 97.3 0.00082 1.8E-08 55.3 6.5 94 109-202 113-228 (325)
70 cd05029 S-100A6 S-100A6: S-100 97.2 0.00072 1.6E-08 45.7 4.9 65 104-168 5-80 (88)
71 KOG0046|consensus 97.2 0.0008 1.7E-08 58.6 6.2 74 123-204 10-87 (627)
72 PF14788 EF-hand_10: EF hand; 97.2 0.0025 5.3E-08 38.2 6.3 49 155-203 1-50 (51)
73 KOG0034|consensus 96.9 0.0059 1.3E-07 47.2 8.0 97 107-203 31-133 (187)
74 PRK12309 transaldolase/EF-hand 96.9 0.0019 4E-08 55.6 5.6 51 140-203 335-386 (391)
75 KOG4666|consensus 96.9 0.0017 3.7E-08 53.6 4.6 92 109-202 259-359 (412)
76 PRK12309 transaldolase/EF-hand 96.8 0.0011 2.4E-08 57.0 3.6 49 113-168 338-386 (391)
77 KOG2643|consensus 96.7 0.011 2.4E-07 50.7 8.6 87 117-205 294-387 (489)
78 cd05030 calgranulins Calgranul 96.7 0.0039 8.4E-08 42.1 4.6 63 106-168 5-80 (88)
79 smart00054 EFh EF-hand, calciu 96.6 0.0014 3.1E-08 33.2 1.9 27 141-167 2-28 (29)
80 KOG4065|consensus 96.4 0.014 3.1E-07 41.0 6.0 57 143-199 71-142 (144)
81 KOG0751|consensus 96.3 0.0087 1.9E-07 52.1 5.4 55 115-169 80-138 (694)
82 KOG0377|consensus 96.2 0.0057 1.2E-07 52.5 4.0 55 113-167 551-615 (631)
83 PF09279 EF-hand_like: Phospho 96.1 0.023 5E-07 37.7 6.0 61 141-202 2-69 (83)
84 cd05024 S-100A10 S-100A10: A s 95.9 0.011 2.4E-07 40.1 3.7 68 62-139 11-78 (91)
85 PF14788 EF-hand_10: EF hand; 95.9 0.016 3.5E-07 34.8 3.8 44 125-168 1-50 (51)
86 PF10591 SPARC_Ca_bdg: Secrete 95.7 0.0021 4.6E-08 45.6 -0.5 57 141-199 56-113 (113)
87 PF13202 EF-hand_5: EF hand; P 95.2 0.047 1E-06 27.6 3.6 24 177-200 1-25 (25)
88 PF14658 EF-hand_9: EF-hand do 95.2 0.064 1.4E-06 34.0 5.0 54 114-167 3-64 (66)
89 KOG2562|consensus 95.1 0.086 1.9E-06 45.7 7.0 88 114-204 230-345 (493)
90 KOG2562|consensus 95.0 0.1 2.2E-06 45.3 7.2 80 120-199 326-421 (493)
91 PF13405 EF-hand_6: EF-hand do 94.8 0.069 1.5E-06 28.3 3.7 26 176-201 1-27 (31)
92 PF05517 p25-alpha: p25-alpha 94.6 0.29 6.2E-06 36.6 8.0 61 144-204 7-71 (154)
93 KOG0042|consensus 94.4 0.11 2.3E-06 46.3 5.9 65 140-204 594-659 (680)
94 KOG0040|consensus 93.8 0.21 4.6E-06 49.2 7.0 96 105-200 2249-2396(2399)
95 KOG0041|consensus 93.8 0.21 4.6E-06 38.8 5.8 93 106-198 96-199 (244)
96 KOG1029|consensus 93.0 0.18 3.9E-06 46.4 5.0 64 139-204 195-259 (1118)
97 KOG0751|consensus 92.9 0.19 4E-06 44.2 4.8 60 140-199 180-241 (694)
98 KOG4251|consensus 92.7 0.14 3.1E-06 40.9 3.6 87 112-199 239-342 (362)
99 smart00054 EFh EF-hand, calciu 92.7 0.15 3.2E-06 25.2 2.6 26 177-202 2-28 (29)
100 KOG4251|consensus 92.5 0.096 2.1E-06 41.9 2.4 63 139-201 101-167 (362)
101 PF08726 EFhand_Ca_insen: Ca2+ 90.7 0.15 3.2E-06 32.7 1.4 53 139-199 6-66 (69)
102 PLN02952 phosphoinositide phos 90.3 1.3 2.9E-05 40.3 7.6 80 122-202 13-110 (599)
103 KOG0035|consensus 89.3 0.83 1.8E-05 43.1 5.6 64 139-202 747-816 (890)
104 PF10591 SPARC_Ca_bdg: Secrete 88.1 0.075 1.6E-06 37.6 -1.5 54 110-163 55-112 (113)
105 PF12763 EF-hand_4: Cytoskelet 87.4 1.6 3.5E-05 30.3 4.9 52 114-166 15-70 (104)
106 KOG2243|consensus 86.7 1.2 2.6E-05 44.1 4.9 58 142-200 4060-4118(5019)
107 PF05042 Caleosin: Caleosin re 84.9 3.1 6.7E-05 31.7 5.6 22 109-130 7-28 (174)
108 KOG0169|consensus 81.8 2.3 5.1E-05 39.3 4.5 86 114-202 141-232 (746)
109 KOG0169|consensus 81.3 5 0.00011 37.3 6.4 62 141-202 138-200 (746)
110 KOG0046|consensus 78.1 2.7 5.9E-05 37.4 3.6 67 60-138 20-86 (627)
111 KOG4578|consensus 77.3 2.8 6.1E-05 35.1 3.3 17 145-161 339-355 (421)
112 PF05042 Caleosin: Caleosin re 75.9 20 0.00043 27.3 7.2 61 139-199 96-163 (174)
113 KOG4578|consensus 73.8 3.4 7.4E-05 34.6 2.9 57 112-168 336-399 (421)
114 KOG3866|consensus 73.8 7.7 0.00017 32.4 4.9 73 128-200 226-322 (442)
115 PF09069 EF-hand_3: EF-hand; 73.7 19 0.00042 24.3 6.1 61 140-202 4-75 (90)
116 PF07499 RuvA_C: RuvA, C-termi 73.5 8.3 0.00018 22.5 3.9 40 158-200 3-42 (47)
117 KOG3555|consensus 73.2 4.1 8.9E-05 34.4 3.3 52 145-200 256-308 (434)
118 cd02859 AMPKbeta_GBD_like AMP- 72.3 5.2 0.00011 26.1 3.1 23 15-40 44-66 (79)
119 KOG3555|consensus 69.2 5.3 0.00011 33.8 3.1 70 112-182 253-324 (434)
120 KOG1707|consensus 69.1 7 0.00015 35.4 4.0 58 140-200 316-375 (625)
121 KOG4666|consensus 69.1 4.1 8.9E-05 34.2 2.4 80 121-200 239-322 (412)
122 PF03672 UPF0154: Uncharacteri 67.5 13 0.00029 23.4 3.9 33 153-185 29-61 (64)
123 PF11116 DUF2624: Protein of u 66.8 35 0.00077 22.8 6.5 32 155-186 14-45 (85)
124 KOG1265|consensus 65.9 87 0.0019 30.3 10.3 77 126-202 205-299 (1189)
125 KOG2871|consensus 65.6 6.9 0.00015 33.4 3.1 58 140-197 310-369 (449)
126 KOG3449|consensus 65.2 16 0.00034 25.6 4.3 45 142-186 4-48 (112)
127 PF11848 DUF3368: Domain of un 62.8 16 0.00034 21.4 3.5 32 153-184 15-47 (48)
128 PF00404 Dockerin_1: Dockerin 62.4 8.8 0.00019 18.5 1.9 15 149-163 1-15 (21)
129 KOG0038|consensus 61.3 12 0.00027 27.7 3.4 16 187-202 84-99 (189)
130 PF01885 PTS_2-RNA: RNA 2'-pho 61.2 17 0.00038 28.0 4.5 45 148-192 25-69 (186)
131 PF07308 DUF1456: Protein of u 60.1 42 0.00091 21.3 5.5 31 156-186 14-44 (68)
132 PRK00523 hypothetical protein; 59.9 21 0.00046 23.0 3.9 32 154-185 38-69 (72)
133 KOG1707|consensus 59.6 21 0.00045 32.5 5.1 64 138-201 194-264 (625)
134 smart00426 TEA TEA domain. 59.1 6.9 0.00015 24.9 1.6 19 52-70 1-19 (68)
135 KOG1955|consensus 58.3 29 0.00062 31.0 5.7 60 140-201 232-292 (737)
136 KOG0045|consensus 58.0 0.97 2.1E-05 41.4 -3.4 88 108-202 508-595 (612)
137 KOG1955|consensus 58.0 17 0.00036 32.5 4.2 63 116-178 238-309 (737)
138 PF07879 PHB_acc_N: PHB/PHA ac 57.9 24 0.00052 22.2 3.8 38 146-183 10-57 (64)
139 PLN02222 phosphoinositide phos 57.2 28 0.00061 31.9 5.7 61 140-202 26-90 (581)
140 PTZ00373 60S Acidic ribosomal 56.9 27 0.00059 24.6 4.4 44 143-186 7-50 (112)
141 PF06014 DUF910: Bacterial pro 56.5 27 0.00058 21.9 3.8 49 157-205 3-57 (62)
142 PF12174 RST: RCD1-SRO-TAF4 (R 56.2 16 0.00035 23.4 3.0 45 155-202 8-53 (70)
143 TIGR02675 tape_meas_nterm tape 53.6 12 0.00027 24.2 2.2 13 123-135 28-40 (75)
144 PRK01844 hypothetical protein; 52.8 32 0.0007 22.2 3.9 32 154-185 37-68 (72)
145 PRK00819 RNA 2'-phosphotransfe 52.1 33 0.00071 26.3 4.6 39 149-187 27-65 (179)
146 cd05833 Ribosomal_P2 Ribosomal 51.8 37 0.0008 23.8 4.4 42 144-185 6-47 (109)
147 PF03633 Glyco_hydro_65C: Glyc 51.5 31 0.00066 20.5 3.6 23 15-37 6-28 (54)
148 PF02337 Gag_p10: Retroviral G 51.4 42 0.00091 22.7 4.5 48 158-205 11-64 (90)
149 COG3763 Uncharacterized protei 50.6 36 0.00079 21.8 3.8 33 153-185 36-68 (71)
150 smart00513 SAP Putative DNA-bi 49.8 29 0.00063 18.6 3.0 20 155-174 3-22 (35)
151 KOG0998|consensus 48.2 6.4 0.00014 37.6 0.2 63 139-203 283-346 (847)
152 PF02037 SAP: SAP domain; Int 47.5 23 0.00049 19.2 2.3 20 155-174 3-22 (35)
153 PF02296 Alpha_adaptin_C: Alph 47.3 4.9 0.00011 28.4 -0.5 46 125-172 6-55 (113)
154 cd07313 terB_like_2 tellurium 47.1 40 0.00087 22.7 4.1 7 124-130 14-20 (104)
155 PF08976 DUF1880: Domain of un 46.4 23 0.00049 25.2 2.6 30 172-201 4-34 (118)
156 PF09279 EF-hand_like: Phospho 45.5 41 0.00089 21.7 3.8 28 176-203 1-28 (83)
157 TIGR00624 tag DNA-3-methyladen 44.9 32 0.0007 26.4 3.6 63 133-197 47-113 (179)
158 PF07862 Nif11: Nitrogen fixat 43.7 61 0.0013 18.7 4.0 21 157-177 28-48 (49)
159 PF13954 PapC_N: PapC N-termin 43.6 29 0.00063 25.4 3.1 19 13-31 26-44 (146)
160 PF12793 SgrR_N: Sugar transpo 43.4 46 0.001 23.5 4.0 38 142-185 7-44 (115)
161 PF12631 GTPase_Cys_C: Catalyt 42.5 65 0.0014 20.5 4.3 46 139-184 23-72 (73)
162 PF09373 PMBR: Pseudomurein-bi 42.3 41 0.00089 17.9 2.8 18 188-205 2-19 (33)
163 TIGR01639 P_fal_TIGR01639 Plas 41.2 86 0.0019 19.3 5.0 49 154-206 8-56 (61)
164 PF08461 HTH_12: Ribonuclease 40.9 48 0.001 20.8 3.4 35 152-186 10-44 (66)
165 TIGR01848 PHA_reg_PhaR polyhyd 40.5 93 0.002 21.7 4.9 67 116-186 10-80 (107)
166 PF13670 PepSY_2: Peptidase pr 40.0 46 0.001 21.6 3.4 24 14-37 51-75 (83)
167 PLN02230 phosphoinositide phos 39.7 66 0.0014 29.6 5.2 62 140-202 30-102 (598)
168 TIGR03798 ocin_TIGR03798 bacte 39.5 92 0.002 19.2 4.8 46 128-180 4-49 (64)
169 PF07128 DUF1380: Protein of u 39.0 1.3E+02 0.0029 22.1 5.7 49 156-204 27-81 (139)
170 COG2818 Tag 3-methyladenine DN 38.3 34 0.00075 26.4 2.8 48 134-181 50-97 (188)
171 KOG4347|consensus 37.7 31 0.00066 31.8 2.8 28 141-168 557-584 (671)
172 PF01316 Arg_repressor: Argini 37.6 74 0.0016 20.3 3.8 30 156-185 20-49 (70)
173 PRK10353 3-methyl-adenine DNA 37.0 34 0.00073 26.5 2.6 65 133-197 48-116 (187)
174 COG4103 Uncharacterized protei 36.5 75 0.0016 23.5 4.1 49 153-201 42-93 (148)
175 TIGR00135 gatC glutamyl-tRNA(G 36.2 1.3E+02 0.0028 20.0 5.6 29 156-184 1-29 (93)
176 PLN00138 large subunit ribosom 36.1 89 0.0019 22.1 4.4 35 151-185 13-47 (113)
177 cd02861 E_set_proteins_like E 35.6 54 0.0012 21.2 3.1 23 15-39 45-67 (82)
178 KOG0506|consensus 35.3 61 0.0013 28.9 4.1 58 144-201 91-157 (622)
179 PRK14981 DNA-directed RNA poly 35.3 73 0.0016 22.3 3.9 28 157-184 80-107 (112)
180 KOG1029|consensus 34.7 1.1E+02 0.0024 29.1 5.8 52 151-204 27-79 (1118)
181 COG3549 HigB Plasmid maintenan 33.5 44 0.00096 22.7 2.4 25 5-31 51-75 (94)
182 PF11593 Med3: Mediator comple 33.3 74 0.0016 27.3 4.2 52 154-206 6-58 (379)
183 PF06207 DUF1002: Protein of u 33.3 64 0.0014 25.8 3.7 47 157-203 173-224 (225)
184 COG1460 Uncharacterized protei 33.1 91 0.002 22.1 4.0 28 157-184 81-108 (114)
185 COG1859 KptA RNA:NAD 2'-phosph 32.9 83 0.0018 24.8 4.2 38 149-186 53-90 (211)
186 PLN02228 Phosphoinositide phos 32.9 1.2E+02 0.0027 27.7 5.8 61 140-202 25-92 (567)
187 PLN02952 phosphoinositide phos 31.4 1.3E+02 0.0027 27.9 5.7 53 152-204 13-67 (599)
188 PF02459 Adeno_terminal: Adeno 31.2 59 0.0013 29.3 3.4 56 129-186 447-502 (548)
189 TIGR02281 clan_AA_DTGA clan AA 31.1 86 0.0019 22.1 3.8 24 13-36 6-29 (121)
190 PF03413 PepSY: Peptidase prop 30.9 94 0.002 18.4 3.5 24 14-37 29-56 (64)
191 PF09068 EF-hand_2: EF hand; 30.6 39 0.00084 24.3 1.9 26 143-168 101-126 (127)
192 COG2058 RPP1A Ribosomal protei 30.2 1.2E+02 0.0026 21.2 4.1 40 155-198 16-55 (109)
193 PF03352 Adenine_glyco: Methyl 30.0 35 0.00075 26.2 1.6 52 133-184 43-94 (179)
194 COG4807 Uncharacterized protei 29.7 77 0.0017 23.1 3.2 54 139-201 91-144 (155)
195 PLN02223 phosphoinositide phos 29.4 1.5E+02 0.0033 26.9 5.8 62 140-202 17-92 (537)
196 PRK06402 rpl12p 50S ribosomal 29.0 1.5E+02 0.0033 20.6 4.6 31 155-185 16-46 (106)
197 PF10437 Lip_prot_lig_C: Bacte 28.8 1.3E+02 0.0028 19.6 4.1 42 157-200 43-86 (86)
198 PF10777 YlaC: Inner membrane 28.8 59 0.0013 24.2 2.6 19 13-31 88-106 (155)
199 PF12949 HeH: HeH/LEM domain; 28.3 44 0.00096 18.3 1.4 19 155-173 3-21 (35)
200 cd05835 Dnmt3b_related The PWW 28.0 47 0.001 22.0 1.9 36 13-48 31-66 (87)
201 COG3426 Butyrate kinase [Energ 28.0 54 0.0012 27.3 2.5 54 31-93 130-190 (358)
202 PF09454 Vps23_core: Vps23 cor 27.7 79 0.0017 19.8 2.7 27 177-203 24-52 (65)
203 COG2080 CoxS Aerobic-type carb 27.4 78 0.0017 23.7 3.1 21 20-40 3-23 (156)
204 PF06384 ICAT: Beta-catenin-in 27.4 79 0.0017 20.7 2.7 24 159-182 20-43 (78)
205 PF09682 Holin_LLH: Phage holi 27.3 1.2E+02 0.0027 20.9 4.0 34 151-184 63-100 (108)
206 PF15144 DUF4576: Domain of un 27.2 35 0.00076 22.3 1.0 44 152-195 37-80 (88)
207 PRK00034 gatC aspartyl/glutamy 27.0 1.9E+02 0.0042 19.2 5.8 30 155-184 2-31 (95)
208 cd04411 Ribosomal_P1_P2_L12p R 27.0 1.8E+02 0.0039 20.2 4.7 39 156-198 17-55 (105)
209 PRK11858 aksA trans-homoaconit 26.6 1.5E+02 0.0032 25.5 5.1 46 159-204 323-372 (378)
210 PF09184 PPP4R2: PPP4R2; Inte 26.4 2.4E+02 0.0053 23.4 6.1 91 112-202 25-126 (288)
211 PF06648 DUF1160: Protein of u 26.1 89 0.0019 22.4 3.1 43 139-184 37-80 (122)
212 PF03979 Sigma70_r1_1: Sigma-7 26.0 88 0.0019 20.4 2.9 33 152-186 18-50 (82)
213 cd05483 retropepsin_like_bacte 25.1 1E+02 0.0023 19.7 3.2 22 17-38 1-22 (96)
214 TIGR01529 argR_whole arginine 24.4 1.4E+02 0.0031 21.9 4.0 33 153-185 14-46 (146)
215 PRK00441 argR arginine repress 24.2 1.4E+02 0.0029 22.2 3.9 34 152-185 15-48 (149)
216 PF08044 DUF1707: Domain of un 23.8 1.6E+02 0.0034 17.6 3.4 32 172-203 3-36 (53)
217 PF01023 S_100: S-100/ICaBP ty 23.5 1.3E+02 0.0027 17.2 2.9 28 140-167 7-36 (44)
218 cd05840 SPBC215_ISWI_like The 23.4 1.2E+02 0.0025 20.5 3.2 30 13-42 37-66 (93)
219 PF01687 Flavokinase: Riboflav 23.1 2.4E+02 0.0052 20.2 4.9 23 11-33 35-57 (125)
220 PF13829 DUF4191: Domain of un 22.8 1.7E+02 0.0037 23.4 4.3 41 146-186 158-198 (224)
221 cd05484 retropepsin_like_LTR_2 22.8 1E+02 0.0022 20.1 2.8 18 19-36 1-18 (91)
222 cd05831 Ribosomal_P1 Ribosomal 22.7 2.3E+02 0.0051 19.5 4.6 32 154-185 16-47 (103)
223 PF09336 Vps4_C: Vps4 C termin 22.4 1.3E+02 0.0028 18.6 2.9 26 155-180 29-54 (62)
224 PF12307 DUF3631: Protein of u 22.4 3.5E+02 0.0075 20.9 5.9 44 140-186 104-157 (184)
225 PHA03291 envelope glycoprotein 22.4 90 0.0019 26.7 2.8 21 10-30 135-155 (401)
226 cd07894 Adenylation_RNA_ligase 22.4 1.6E+02 0.0034 25.1 4.4 26 145-170 131-156 (342)
227 PF09312 SurA_N: SurA N-termin 22.3 1.2E+02 0.0025 21.2 3.1 21 166-186 61-81 (118)
228 PF05099 TerB: Tellurite resis 22.1 52 0.0011 23.4 1.3 68 122-192 36-114 (140)
229 PF10281 Ish1: Putative stress 22.0 1.2E+02 0.0026 16.5 2.5 18 157-174 5-22 (38)
230 cd05834 HDGF_related The PWWP 22.0 69 0.0015 21.1 1.8 35 14-48 31-65 (83)
231 PF12486 DUF3702: ImpA domain 21.9 99 0.0021 23.0 2.7 41 128-168 58-98 (148)
232 PRK14602 ruvA Holliday junctio 21.9 2.9E+02 0.0062 21.6 5.5 43 158-202 155-197 (203)
233 COG1658 Small primase-like pro 21.9 1.1E+02 0.0023 22.1 2.8 55 125-179 39-94 (127)
234 PF14069 SpoVIF: Stage VI spor 21.2 2.5E+02 0.0055 18.4 5.3 44 157-200 29-76 (79)
235 TIGR03685 L21P_arch 50S riboso 21.0 2.6E+02 0.0056 19.4 4.5 31 155-185 16-46 (105)
236 KOG2301|consensus 21.0 62 0.0013 33.4 1.9 62 140-202 1418-1484(1592)
237 PF01498 HTH_Tnp_Tc3_2: Transp 20.9 1.3E+02 0.0027 18.7 2.8 33 153-185 11-43 (72)
238 PHA03046 Hypothetical protein; 20.6 2.8E+02 0.0061 20.1 4.6 38 170-207 63-100 (142)
239 KOG4347|consensus 20.5 86 0.0019 29.0 2.5 49 112-161 558-612 (671)
240 PRK14603 ruvA Holliday junctio 20.5 3E+02 0.0065 21.4 5.3 43 158-202 152-194 (197)
241 PRK09389 (R)-citramalate synth 20.4 2.1E+02 0.0045 25.7 5.0 45 159-203 321-368 (488)
242 PF09066 B2-adapt-app_C: Beta2 20.4 73 0.0016 22.0 1.7 47 122-170 3-50 (114)
243 COG4483 Uncharacterized protei 20.3 2.4E+02 0.0052 17.8 5.1 48 157-204 3-56 (68)
244 PRK03341 arginine repressor; P 20.1 1.7E+02 0.0038 22.1 3.8 34 152-185 26-59 (168)
245 PLN03228 methylthioalkylmalate 20.1 1.9E+02 0.004 26.2 4.6 43 159-201 430-475 (503)
246 PF05597 Phasin: Poly(hydroxya 20.1 1.8E+02 0.0038 21.2 3.7 27 159-186 94-120 (132)
247 PHA03289 envelope glycoprotein 20.1 1.1E+02 0.0024 25.8 2.9 20 10-29 128-147 (352)
No 1
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=99.96 E-value=5.7e-31 Score=219.15 Aligned_cols=190 Identities=37% Similarity=0.613 Sum_probs=135.1
Q ss_pred CCCCeEEEEEEeeCCeEEEEEecCCccccCCcEEEEecCCCCccchHHHHHHHHHhcCCccccccCchHHhHHhhhCCce
Q psy107 13 PSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGIT 92 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~v~iDd~~p~~~~~~~~~~~~~~~~~W~~lleKafak~~G~y~~i~~~~~~~~l~~ltG~~~ 92 (209)
+|+.|+|+||||+||+|+.|+|||+||+.+|.+.|+++.+.+++|++||||||||++|+|.+|.++...++|.+|||+++
T Consensus 97 ~~~~G~y~vrl~~~G~w~~V~VDd~lP~~~~~~~~~~~~~~~e~W~~LLEKAyAK~~GsY~~i~gg~~~~al~~LTG~~~ 176 (318)
T smart00230 97 ENYAGIFHFRFWRFGKWVDVVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKLNGCYEALKGGSTTEALEDLTGGVA 176 (318)
T ss_pred cccCCEEEEEEEECCEEEEEEecCCCeeeCCceEEEEeCCCCcchhHHHHHHHHHHcCCCcccCCCCHHHHHHHhcCCCe
Confidence 68999999999999999999999999998888999999889999999999999999999999999999999999999999
Q ss_pred EEeeccCC---CCcchhhhhhhhccccccccC-CCcc-eeHHHHHHHHHcHHHHHhhccccccCC-Cc-cccHHHHHHHH
Q psy107 93 ESISIRQD---PTSSGRLLNKLLDMTRCMETS-GTGR-LKFSDFKDLMCSLKYWQTAFKNHTKEK-TG-ILRAERLRDAL 165 (209)
Q Consensus 93 ~~~~~~~~---~~~l~~~l~~~~~~~~~~d~~-~~g~-i~~~eF~~l~~~~~~~~~~F~~~D~d~-~G-~I~~~eL~~~l 165 (209)
+.+.++.. ...+|..+.+..+...++.+. +.+. ....+.... . + .-.++|.+.|... +| .+..-.||+++
T Consensus 177 ~~i~l~~~~~~~~~~w~~l~~~~~~g~lv~~~t~~~~~~~~~~~~~~-G-L-v~~HaYsVl~v~~~~~~~~~Ll~lrNPW 253 (318)
T smart00230 177 ESIDLKEASKDPDNLFEDLFKAFERGSLMGCSIGAGTAVEEEEQKDC-G-L-VKGHAYSVTDVREVQGRRQELLRLRNPW 253 (318)
T ss_pred EEEEcccccCCHHHHHHHHHHHHhCCCeEEEEcCCCCcchhhhhhhc-C-c-ccCccEEEEEEEEEecCCeEEEEEECCC
Confidence 99998865 345677777666666555432 1111 112222110 0 0 1235677666532 11 23456677777
Q ss_pred HHc---CC------CCC---HHHHHHHHHHh-hCCCceEeHHHHHHHHHHHHH
Q psy107 166 LEV---GY------QLN---TEVLSVLTLRY-MRKDGTLRFGDFVSSVLHLSI 205 (209)
Q Consensus 166 ~~~---G~------~~~---~~~~~~l~~~~-~~~~g~i~~~eF~~~~~~l~~ 205 (209)
... |. ..+ ++..+.+-... +++.+||+|+||++.+..+..
T Consensus 254 g~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWM~~~df~~~F~~~~v 306 (318)
T smart00230 254 GQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFLRHFDKVEI 306 (318)
T ss_pred CCCCcCCCCCCCCccccccCHHHHHHhCCCCCCCCEEEEEhHHHHhhCCeEEE
Confidence 643 21 122 23333332122 237889999999999876543
No 2
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=99.96 E-value=4.4e-30 Score=214.00 Aligned_cols=188 Identities=35% Similarity=0.488 Sum_probs=132.4
Q ss_pred CCCCeEEEEEEeeCCeEEEEEecCCccccCCcEEEEecCCCCccchHHHHHHHHHhcCCccccccCchHHhHHhhhCCce
Q psy107 13 PSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGIT 92 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~v~iDd~~p~~~~~~~~~~~~~~~~~W~~lleKafak~~G~y~~i~~~~~~~~l~~ltG~~~ 92 (209)
.++.|+|+||||.+|+|+.|+|||+||+..+.|.|+++.+.+++|++||||||||++|+|..|.++.+..+|..|||+++
T Consensus 105 ~~~~G~y~v~l~~~G~w~~V~VDD~lP~~~~~~~~~~s~~~~e~W~~LlEKAyAK~~GsY~~i~gg~~~~al~~LTG~~~ 184 (315)
T cd00044 105 ENYAGIYHFRFWKNGEWVEVVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEALVGGNTAEALEDLTGGPT 184 (315)
T ss_pred cCcCcEEEEEEEECCEEEEEEecCCCeecCCceEEEEECCCCeEcHHHHHHHHHhhcCCccccCCCCHHHHHHHhhCCCc
Confidence 48999999999999999999999999998877999999888999999999999999999999999999999999999999
Q ss_pred EEeeccCC-----CCcchhhhhhhhccccccccCCCcceeHHH-HHHHHHcHHHHHhhccccccCCCc--cccHHHHHHH
Q psy107 93 ESISIRQD-----PTSSGRLLNKLLDMTRCMETSGTGRLKFSD-FKDLMCSLKYWQTAFKNHTKEKTG--ILRAERLRDA 164 (209)
Q Consensus 93 ~~~~~~~~-----~~~l~~~l~~~~~~~~~~d~~~~g~i~~~e-F~~l~~~~~~~~~~F~~~D~d~~G--~I~~~eL~~~ 164 (209)
+.+.++.. ...++..+.+..+-..++.... +..+-.+ .... -+ .-.++|.++|...-. .+..-.||++
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~lv~~~t-~~~~~~~~~~~~--Gl-~~~HaY~Vl~~~~~~~~~~~lv~lrNP 260 (315)
T cd00044 185 ERIDLKSADASSGDNDLFALLLSFLQGGSLIGCST-GSRSEEEARTAN--GL-VKGHAYSVLDVREVQEEGLRLLRLRNP 260 (315)
T ss_pred EEEEccccccccCHHHHHHHHHHHhhCCCEEEEEc-CCCCcchhhccC--Cc-ccCcceEEeEEEEEccCceEEEEecCC
Confidence 99998875 2456666666665444443221 1111111 1100 00 123567777664332 4566678888
Q ss_pred HHHcCCC----CCH------HHHHHHH-HH-hhCCCceEeHHHHHHHHHHHH
Q psy107 165 LLEVGYQ----LNT------EVLSVLT-LR-YMRKDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 165 l~~~G~~----~~~------~~~~~l~-~~-~~~~~g~i~~~eF~~~~~~l~ 204 (209)
+....+. -.. ....... .. .+++.+||+|+||++.+..+.
T Consensus 261 Wg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~df~~~F~~~~ 312 (315)
T cd00044 261 WGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFEDFLRNFDGLY 312 (315)
T ss_pred ccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHHhheeeCeEE
Confidence 8765221 110 1111111 11 223778999999999876553
No 3
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=99.95 E-value=1.3e-29 Score=209.72 Aligned_cols=188 Identities=34% Similarity=0.501 Sum_probs=120.9
Q ss_pred CCCCeEEEEEEeeCCeEEEEEecCCccccCCcEEEEecCCCCccchHHHHHHHHHhcCCccccccCchHHhHHhhhCCce
Q psy107 13 PSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGIT 92 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~v~iDd~~p~~~~~~~~~~~~~~~~~W~~lleKafak~~G~y~~i~~~~~~~~l~~ltG~~~ 92 (209)
.+..|+|+||||.+|+|++|+|||+||+.+|+|+|+++.+.+++|++||||||||++|+|.+|.++.+..+|.+|||+++
T Consensus 84 ~~~~G~y~v~l~~~G~w~~V~VDd~lP~~~g~~~f~~s~~~~elW~~LlEKAyAKl~GsY~~l~gg~~~~al~~LTG~~~ 163 (298)
T PF00648_consen 84 ENYNGIYTVRLFKNGEWREVTVDDRLPCKNGKPLFARSSDPNELWPSLLEKAYAKLHGSYSALEGGNPSEALQDLTGGPP 163 (298)
T ss_dssp TT-SSEEEEEEEETTEEEEEEEES-EEEETTEESSSBESSTTB-HHHHHHHHHHHHTTSSGGGSSBSHHHHHHHHHSSEE
T ss_pred cccCceeeEeeccCCeeeeeccchhhhccccceeeeccCCcccchhhhhhchhhhccccccccCCCChhhhhHhhcCCcc
Confidence 34689999999999999999999999998899999998889999999999999999999999999999999999999999
Q ss_pred EEeeccCCC--CcchhhhhhhhccccccccCC--CcceeHHHHHHHHHcHHHHHhhccccccCCCc----cccHHHHHHH
Q psy107 93 ESISIRQDP--TSSGRLLNKLLDMTRCMETSG--TGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG----ILRAERLRDA 164 (209)
Q Consensus 93 ~~~~~~~~~--~~l~~~l~~~~~~~~~~d~~~--~g~i~~~eF~~l~~~~~~~~~~F~~~D~d~~G----~I~~~eL~~~ 164 (209)
+.+.++... .+++..+....+....+.+.. +.....++... .-+ .-.++|.++|...-+ ....-.||++
T Consensus 164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gl-~~~HaY~Vl~~~~~~~~~~~~~lv~LrNP 240 (298)
T PF00648_consen 164 ESIDLRDDSSDDELWELWKKLLKSGSLVGCSTGSSTPFDSEEYEK--NGL-VPGHAYAVLDVREVNGNGEGHRLVKLRNP 240 (298)
T ss_dssp EEEEGGG--T--THHHHHHHHHHCT-EEEEE--SSSGGGTTSBCT--TSB-BTTS-EEEEEEEEEEETTEEEEEEEEE-T
T ss_pred eeeeccccchhhhHHHHHHHHHHhccccccccccccccccccccc--cCc-ccceeEEEEEEEeeccccceeEEEEEcCC
Confidence 999987653 355666655544433222111 10111110000 000 113566666643321 2455567777
Q ss_pred HHHc---CC------C---CCHHHHHHHHHHhh-CCCceEeHHHHHHHHHHH
Q psy107 165 LLEV---GY------Q---LNTEVLSVLTLRYM-RKDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 165 l~~~---G~------~---~~~~~~~~l~~~~~-~~~g~i~~~eF~~~~~~l 203 (209)
+... |. . +.+...+.+-.... ++..||+|+||++.+..+
T Consensus 241 wg~~~w~G~ws~~s~~W~~~~~~~~~~~~~~~~~dg~FWM~~~df~~~F~~i 292 (298)
T PF00648_consen 241 WGSTEWKGDWSDDSPEWTEIHPSLRKRLNQSSSDDGTFWMSFEDFLKYFSSI 292 (298)
T ss_dssp TSS---SSTTSTTSGGGGGS-HHHHHHHTTTSSSSSEEEEEHHHHHHHSEEE
T ss_pred CccccccccccccccccccCCHHHHhhcccccccCccHhHhHHHHHhhCCce
Confidence 6543 21 1 11222222222222 267799999999987544
No 4
>KOG0045|consensus
Probab=99.95 E-value=3.5e-28 Score=215.21 Aligned_cols=197 Identities=36% Similarity=0.507 Sum_probs=141.3
Q ss_pred CCCCCCCCCCeEEEEEEeeCCeEEEEEecCCccccCCcEEEEecCCCCccchHHHHHHHHHhcCCccccccCchHHhHHh
Q psy107 7 CGSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLAD 86 (209)
Q Consensus 7 ~~~~~~~~~~G~y~~~~~~~g~~~~v~iDd~~p~~~~~~~~~~~~~~~~~W~~lleKafak~~G~y~~i~~~~~~~~l~~ 86 (209)
+.+.+.+++.|+|+||||.+|+|+.|+|||+||+..+...|+++...+++|.+||||||||++|+|+.+.++...+|+.+
T Consensus 107 ~~~~~~~~yaGif~f~~w~~G~W~~VvIDD~LP~~~~~~~~~~s~~~~efW~aLlEKAyaKl~GsY~~l~gg~~~~a~~~ 186 (612)
T KOG0045|consen 107 QDQSFQENYAGIFHFRFWQNGEWVEVVIDDRLPTSNGGLLFSHSSGKNEFWAALLEKAYAKLLGSYEALHGGSTIDALVD 186 (612)
T ss_pred CCcccccccceEEEEEEEeCCeEEEEEeeeecceEcCCEEEEeecCCceeHHHHHHHHHHHHhCcccCCCCCchhhHHHh
Confidence 34577899999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhCCceEEeeccCCCC----cchhhhhhhhccccccccCCCc-ceeHHH-HHHHHHcHHHHHhhcccccc----CCCccc
Q psy107 87 LTGGITESISIRQDPT----SSGRLLNKLLDMTRCMETSGTG-RLKFSD-FKDLMCSLKYWQTAFKNHTK----EKTGIL 156 (209)
Q Consensus 87 ltG~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~d~~~~g-~i~~~e-F~~l~~~~~~~~~~F~~~D~----d~~G~I 156 (209)
|||++++.+.++..+. ++...+....+...++-+...+ ....++ -..+-..+ .=.++|...|. ...|..
T Consensus 187 lTG~~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~gL-~~~HaYsit~~~~~~~~~~~~ 265 (612)
T KOG0045|consen 187 LTGGVTEPFDLNKTPKSFKNNLVWALLKSAHRGSLLLCSIESKDPTEEEEEAKLRNGL-VKGHAYAITDVREVQGRGGKH 265 (612)
T ss_pred ccCCccceeEcccCcchhHHHHHHHHHHhhhccCceeeeccccccchhHHHHHhhcCc-cccccEEEEEEEEeecccccc
Confidence 9999999999998776 3333334444444555443333 111221 11110111 01245555543 134456
Q ss_pred cHHHHHHHHHHc---CC---------CCCHHHHHHHHHH-hhCCCceEeHHHHHHHHHHHH
Q psy107 157 RAERLRDALLEV---GY---------QLNTEVLSVLTLR-YMRKDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 157 ~~~eL~~~l~~~---G~---------~~~~~~~~~l~~~-~~~~~g~i~~~eF~~~~~~l~ 204 (209)
....||++++.. |. .+.......+... .+++++||++++|++.+.++.
T Consensus 266 ~lirlrNPwg~~~W~G~wsd~~~~W~~v~~~~~~~~~~~~~~dGeFWms~~dF~~~F~~~~ 326 (612)
T KOG0045|consen 266 RLIRLRNPWGESEWNGPWSDGSEEWHLVDKSKLSELGRQPLDDGEFWMSFDDFLREFDSLT 326 (612)
T ss_pred eeEEecCCcCCceeccccccCCcchhhhCHHHHhhcccccccCCCeeeeHHHHHhhCCeEe
Confidence 777777777743 11 2233445555444 344899999999999987654
No 5
>KOG0037|consensus
Probab=99.92 E-value=7.6e-25 Score=167.62 Aligned_cols=123 Identities=21% Similarity=0.423 Sum_probs=110.0
Q ss_pred ccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHcHHHHHhhccccccC
Q psy107 72 YEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKE 151 (209)
Q Consensus 72 y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~~~~~~~F~~~D~d 151 (209)
.+.|...++..||.+.+.. .+.+++|+.|++++|.+.+|+|+++||.+||..++.|+.+|+.||+|
T Consensus 71 sg~i~~~eLq~aLsn~~~~--------------~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 71 SGRILAKELQQALSNGTWS--------------PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred cccccHHHHHHHhhcCCCC--------------CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3455556666666653322 36789999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHhhc
Q psy107 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIAFN 208 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~~~ 208 (209)
++|+|+..||++||.++|+.++++..+.|++++++ ++|.|.|++|++|+++|+++++
T Consensus 137 ~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~ 194 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTE 194 (221)
T ss_pred CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 6999999999999999988775
No 6
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.76 E-value=5.4e-18 Score=126.11 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcC-CccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHc
Q psy107 59 GLLEKAYAKLHG-SYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCS 137 (209)
Q Consensus 59 ~lleKafak~~G-~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~ 137 (209)
.-+.+||..+.- +.+.|...++..+|+.+...+++ ..+.+++..++. +++.|+|.+|+.++..
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~---------------~ei~~l~~~~d~-~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSE---------------AEINKLFEEIDA-GNETVDFPEFLTVMSV 83 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcH---------------HHHHHHHHhccC-CCCccCHHHHHHHHHH
Confidence 456799999974 47899999999999977666654 567788888888 8999999999998874
Q ss_pred H-------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 138 L-------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 138 ~-------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
. ++++.||+.||+|++|+|+..||+.+|+.+|..+++++++.|+..++. ++|.|+|++|++.+..
T Consensus 84 ~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 84 KLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 3 589999999999999999999999999999999999999999999997 9999999999998753
No 7
>KOG0027|consensus
Probab=99.75 E-value=1.2e-17 Score=125.04 Aligned_cols=129 Identities=24% Similarity=0.361 Sum_probs=114.3
Q ss_pred HHHHHHHHHh-cCCccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHc
Q psy107 59 GLLEKAYAKL-HGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCS 137 (209)
Q Consensus 59 ~lleKafak~-~G~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~ 137 (209)
.-+.+||..+ ..+.+.|...++..++..+...|++ .++..+++.+|.+++|.|++.||..++..
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~---------------~el~~~~~~~D~dg~g~I~~~eF~~l~~~ 72 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTE---------------EELRDLIKEIDLDGDGTIDFEEFLDLMEK 72 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCH---------------HHHHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence 3467788887 4556889999999999998776654 77888999999999999999999998774
Q ss_pred H-----------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 138 L-----------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 138 ~-----------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
. .++++||+.||+|++|+|+..||+.+|..+|..++.++++.+++.++. ++|.|+|++|++++..
T Consensus 73 ~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 73 LGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred hhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 3 278999999999999999999999999999999999999999999998 9999999999999853
No 8
>KOG0028|consensus
Probab=99.56 E-value=3.1e-14 Score=104.25 Aligned_cols=128 Identities=19% Similarity=0.310 Sum_probs=110.6
Q ss_pred HHHHHHHHh-cCCccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHc-
Q psy107 60 LLEKAYAKL-HGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCS- 137 (209)
Q Consensus 60 lleKafak~-~G~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~- 137 (209)
-++-||.-+ .+..+.|+..++..|+.++.-.+.. .++..+++.+|.+++|.|+|++|+..+..
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k---------------~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKK---------------EEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcch---------------HHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 355677766 4667889999998889887554432 56788999999999999999999998663
Q ss_pred ------HHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 138 ------LKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 138 ------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
..+++.+|+.+|.|++|.|+..+|+.+..++|.+++++++++|+.+++. ++|.|+-++|+.+|.+
T Consensus 99 ~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 99 LGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 2589999999999999999999999999999999999999999999998 9999999999998753
No 9
>KOG0030|consensus
Probab=99.52 E-value=4.1e-14 Score=101.27 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=105.5
Q ss_pred HHHHHHHHHhc-CCccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccC--CCcceeHHHHHHHH
Q psy107 59 GLLEKAYAKLH-GSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETS--GTGRLKFSDFKDLM 135 (209)
Q Consensus 59 ~lleKafak~~-G~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~--~~g~i~~~eF~~l~ 135 (209)
+-+..||.=+. .+++.|.+....+.|+.|.-.|++ .++.+.......+ +.-+|+|++|+.++
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~---------------aeV~k~l~~~~~~~~~~~rl~FE~fLpm~ 75 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTN---------------AEVLKVLGQPKRREMNVKRLDFEEFLPMY 75 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcH---------------HHHHHHHcCcccchhhhhhhhHHHHHHHH
Confidence 45556666653 468899999999999999888865 3444444444444 34689999999998
Q ss_pred HcHH---------HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHHH
Q psy107 136 CSLK---------YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVL 201 (209)
Q Consensus 136 ~~~~---------~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~ 201 (209)
.++. .+-+..+.||++++|+|...|||.+|..+|..+++++++.++....+++|.|+|++|++.+.
T Consensus 76 q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 76 QQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcHHHHHHHHh
Confidence 8763 56778899999999999999999999999999999999999998888999999999998764
No 10
>PTZ00184 calmodulin; Provisional
Probab=99.49 E-value=2.4e-13 Score=100.67 Aligned_cols=127 Identities=20% Similarity=0.356 Sum_probs=103.9
Q ss_pred HHHHHHHHhcC-CccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHcH
Q psy107 60 LLEKAYAKLHG-SYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSL 138 (209)
Q Consensus 60 lleKafak~~G-~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~ 138 (209)
-++++|..+.. ..+.|+..++..++..+...++ -..+..+...+|.+++|.|++++|...+...
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~---------------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT---------------EAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC---------------HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 45677777643 3667888888877766532221 1456777888899999999999999876632
Q ss_pred -------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 139 -------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 139 -------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
..++.+|+.+|.+++|.|+..|++.++..+|..++.++++.++..++. ++|.|+|++|+.++.
T Consensus 77 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 77 MKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred ccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 367899999999999999999999999999999999999999999987 899999999998875
No 11
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=3.7e-13 Score=100.85 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcC-CccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHc
Q psy107 59 GLLEKAYAKLHG-SYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCS 137 (209)
Q Consensus 59 ~lleKafak~~G-~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~ 137 (209)
.-++++|..+.. +.+.|+..++..+|..+.-.++ ...+..+...+|.+++|.|++.||..++..
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~---------------~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPK---------------KEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC---------------HHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 456778877763 3667888888888876521111 134666777788999999999999987654
Q ss_pred H-------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 138 L-------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 138 ~-------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
. ..++.+|+.+|.+++|.|+..|++.++..+|..+++.+++.++..++. ++|.|+|++|+.++..
T Consensus 82 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 82 KLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 2 368899999999999999999999999999999999999999999986 8999999999998864
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.35 E-value=2.5e-12 Score=87.41 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=64.1
Q ss_pred cHHHHHhhcccccc-CCCccccHHHHHHHHHH-cCCCCCH-HHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHh
Q psy107 137 SLKYWQTAFKNHTK-EKTGILRAERLRDALLE-VGYQLNT-EVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIA 206 (209)
Q Consensus 137 ~~~~~~~~F~~~D~-d~~G~I~~~eL~~~l~~-~G~~~~~-~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~ 206 (209)
.+..+..+|+.||+ +++|+|+..||+.+|++ +|..+++ ++++.|++.+|. ++|.|+|+||+.++.+|..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 34578899999999 99999999999999999 9988888 999999999998 99999999999999988644
No 13
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=1.8e-11 Score=83.15 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=64.0
Q ss_pred cHHHHHhhccccc-cCCCc-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHhh
Q psy107 137 SLKYWQTAFKNHT-KEKTG-ILRAERLRDALLE-----VGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIAF 207 (209)
Q Consensus 137 ~~~~~~~~F~~~D-~d~~G-~I~~~eL~~~l~~-----~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~~ 207 (209)
.+..++.+|+.|| +|++| +|+..||+.+|++ +|...++++++.+++.++. ++|.|+|++|+.++..+..++
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~ 84 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTAC 84 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3567899999998 79999 6999999999999 8999999999999999998 899999999999998876543
No 14
>KOG0031|consensus
Probab=99.21 E-value=2.8e-10 Score=83.10 Aligned_cols=123 Identities=19% Similarity=0.274 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCC-ccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHcH
Q psy107 60 LLEKAYAKLHGS-YEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSL 138 (209)
Q Consensus 60 lleKafak~~G~-y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~ 138 (209)
-+..||.=+.-+ ++.|+...+.+.|..|..-+++ .++..|+ ...+|+|+|.-|+.++...
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d---------------~elDaM~----~Ea~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASD---------------EELDAMM----KEAPGPINFTVFLTMFGEK 93 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCH---------------HHHHHHH----HhCCCCeeHHHHHHHHHHH
Confidence 455677766533 7778888888877776444332 2333343 3467999999999998853
Q ss_pred -------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 139 -------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 139 -------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
..+..||+.||.+++|.|..+.||++|...|.++++++++.|.+.+.. ..|.++|..|+.++.
T Consensus 94 L~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 94 LNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred hcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 367899999999999999999999999999999999999999998877 899999999998875
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.20 E-value=4.3e-11 Score=76.76 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=53.0
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHH----HHHhhC-CCceEeHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVL----TLRYMR-KDGTLRFGDFVSSV 200 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l----~~~~~~-~~g~i~~~eF~~~~ 200 (209)
+++.+|+.+|.|++|+|+..||+.++..+|...++.+.+.+ +..+|. ++|.|+|+||+++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36789999999999999999999999999987766555554 777887 89999999999875
No 16
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.15 E-value=2.3e-10 Score=77.74 Aligned_cols=71 Identities=18% Similarity=0.347 Sum_probs=63.2
Q ss_pred cHHHHHhhcccccc-CC-CccccHHHHHHHHH---HcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHhh
Q psy107 137 SLKYWQTAFKNHTK-EK-TGILRAERLRDALL---EVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIAF 207 (209)
Q Consensus 137 ~~~~~~~~F~~~D~-d~-~G~I~~~eL~~~l~---~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~~ 207 (209)
.+..+..+|..||. |+ +|+|+..||+++|+ ++|..+++++++++++.++. ++|.|+|+||+.++.+|..++
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~~ 84 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALIY 84 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34567789999998 67 89999999999997 37999999999999999997 899999999999999987665
No 17
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.14 E-value=2.3e-10 Score=78.47 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=60.2
Q ss_pred HHHHHhhccccc-cCCCc-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHh
Q psy107 138 LKYWQTAFKNHT-KEKTG-ILRAERLRDALLE-VG----YQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIA 206 (209)
Q Consensus 138 ~~~~~~~F~~~D-~d~~G-~I~~~eL~~~l~~-~G----~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~ 206 (209)
+..++++|+.|| ++++| +|+..||+.+|+. +| ..+++++++.++..++. ++|.|+|++|+.++..+-.+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 357889999997 99999 5999999999986 55 35688999999999998 89999999999999887654
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=85.95 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=61.7
Q ss_pred HcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHHHH
Q psy107 136 CSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202 (209)
Q Consensus 136 ~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~ 202 (209)
.++++|+++|+.+|+|++|.|+..||..+|+.+|+..+++++..|+..++.+++.|+|.+|+.+|.+
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSV 83 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999998877889999999999865
No 19
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.12 E-value=3e-10 Score=78.18 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=61.0
Q ss_pred HHHHHhhcccccc-CC-CccccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHh
Q psy107 138 LKYWQTAFKNHTK-EK-TGILRAERLRDALLE-----VGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIA 206 (209)
Q Consensus 138 ~~~~~~~F~~~D~-d~-~G~I~~~eL~~~l~~-----~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~ 206 (209)
+..++.+|..||. |+ +|+|+..||+.+|++ +|..+++++++.++..++. ++|.|+|++|+.++..+..+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4578899999997 97 799999999999987 5778899999999999988 89999999999999876543
No 20
>KOG0027|consensus
Probab=99.12 E-value=2.9e-10 Score=85.07 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=62.3
Q ss_pred HHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 138 LKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 138 ~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
+.+++.+|+.||++++|+|+..||+.+++.+|..+++.++..++.+++. ++|.|+|++|+.++.+.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 4578999999999999999999999999999999999999999999998 99999999999998753
No 21
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.10 E-value=3.5e-10 Score=77.70 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=60.6
Q ss_pred cHHHHHhhccccc-cCCCc-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHhh
Q psy107 137 SLKYWQTAFKNHT-KEKTG-ILRAERLRDALLE-V----GYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIAF 207 (209)
Q Consensus 137 ~~~~~~~~F~~~D-~d~~G-~I~~~eL~~~l~~-~----G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~~ 207 (209)
.+..++.+|..|| +|++| +|+..||+.+|+. + +...++.+++.++..+|. ++|.|+|+||+.++..|-.++
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~ 86 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVAC 86 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3457889999999 78998 5999999999977 3 344578899999999998 899999999999999886553
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.09 E-value=4.8e-10 Score=77.49 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=60.8
Q ss_pred HHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHh
Q psy107 138 LKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIA 206 (209)
Q Consensus 138 ~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~ 206 (209)
+..++.+|..+|.|++|.|+..|++.+|+..| +++++++.++..++. ++|.|+|++|+.++..+.++
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999987 688899999999987 89999999999999887765
No 23
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.05 E-value=6.2e-10 Score=71.29 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=56.8
Q ss_pred HhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHh
Q psy107 142 QTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIA 206 (209)
Q Consensus 142 ~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~ 206 (209)
+.+|+.+|.+++|.|+..|++.++..+|. ++++++.++..++. ++|.|+|++|+.++..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999985 88899999999987 89999999999998776543
No 24
>KOG0036|consensus
Probab=99.01 E-value=2.6e-09 Score=89.34 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=81.7
Q ss_pred hhccccccccCCCcceeHHHHHHHHH-cHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CC
Q psy107 111 LLDMTRCMETSGTGRLKFSDFKDLMC-SLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KD 188 (209)
Q Consensus 111 ~~~~~~~~d~~~~g~i~~~eF~~l~~-~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~ 188 (209)
+..+.+.+|.+.+|+++++||++... +..++...|+..|.+++|.|+..|+.+.|+.+|.++++++++.+++.++. ++
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~ 132 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGK 132 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCC
Confidence 34566788999999999999998766 34578899999999999999999999999999999999999999999998 89
Q ss_pred ceEeHHHHHHHHH
Q psy107 189 GTLRFGDFVSSVL 201 (209)
Q Consensus 189 g~i~~~eF~~~~~ 201 (209)
+.|+++||.+.+.
T Consensus 133 ~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 133 ATIDLEEWRDHLL 145 (463)
T ss_pred eeeccHHHHhhhh
Confidence 9999999988764
No 25
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.97 E-value=1.9e-09 Score=73.22 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=59.6
Q ss_pred cHHHHHhhcccccc--CCCccccHHHHHHHHHH-cCCCC----CHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHH
Q psy107 137 SLKYWQTAFKNHTK--EKTGILRAERLRDALLE-VGYQL----NTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 137 ~~~~~~~~F~~~D~--d~~G~I~~~eL~~~l~~-~G~~~----~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~ 204 (209)
.+..++.+|..+|+ +++|.|+..||+.+++. +|..+ ++++++.++..++. ++|.|+|++|+.++..+.
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 45678899999999 89999999999999986 56544 58999999999988 899999999999988764
No 26
>KOG0034|consensus
Probab=98.95 E-value=3.3e-09 Score=81.62 Aligned_cols=91 Identities=22% Similarity=0.360 Sum_probs=73.1
Q ss_pred hccccccccCCCcc-eeHHHHHHHHHcH-------HHHHhhccccccCCCccccHHHHHHHHHHc-CCCCC--HHHHHHH
Q psy107 112 LDMTRCMETSGTGR-LKFSDFKDLMCSL-------KYWQTAFKNHTKEKTGILRAERLRDALLEV-GYQLN--TEVLSVL 180 (209)
Q Consensus 112 ~~~~~~~d~~~~g~-i~~~eF~~l~~~~-------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~~~~--~~~~~~l 180 (209)
.+++..++.+++|. |+|++|..+.... .+++-||+.||.+++|.|+.+|+.+++..+ |...+ ++.++.|
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 35667778888887 9999999886632 378889999999999999999999999987 44455 6655554
Q ss_pred H----HHhhC-CCceEeHHHHHHHHHH
Q psy107 181 T----LRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 181 ~----~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
+ .++|. ++|.|+|+||.+.+.+
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 4 45666 8999999999999876
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.92 E-value=6.2e-09 Score=63.99 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=48.2
Q ss_pred CCccccHHHHHHHHHHcCCC-CCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 152 KTGILRAERLRDALLEVGYQ-LNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~~-~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
++|.|+.++|+.+|..+|.. +++++++.++..+|. ++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 999999999999998 9999999999999875
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.91 E-value=6.8e-09 Score=70.64 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=61.0
Q ss_pred cHHHHHhhccc-cccCCCc-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHhh
Q psy107 137 SLKYWQTAFKN-HTKEKTG-ILRAERLRDALLEV-----GYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIAF 207 (209)
Q Consensus 137 ~~~~~~~~F~~-~D~d~~G-~I~~~eL~~~l~~~-----G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~~ 207 (209)
.+..+..+|.. +|++++| +|+..||+.++... +...++.+++.+++.+|. ++|.|+|+||+.++..|..++
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~ 85 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVAC 85 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 45678899999 8888876 99999999999986 445678899999999988 999999999999999886543
No 29
>PF14658 EF-hand_9: EF-hand domain
Probab=98.90 E-value=7.3e-09 Score=65.56 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=55.3
Q ss_pred hhccccccCCCccccHHHHHHHHHHcCC-CCCHHHHHHHHHHhhC-CC-ceEeHHHHHHHHHH
Q psy107 143 TAFKNHTKEKTGILRAERLRDALLEVGY-QLNTEVLSVLTLRYMR-KD-GTLRFGDFVSSVLH 202 (209)
Q Consensus 143 ~~F~~~D~d~~G~I~~~eL~~~l~~~G~-~~~~~~~~~l~~~~~~-~~-g~i~~~eF~~~~~~ 202 (209)
.+|..||.+++|.|...+|...|+++|. ..++.+++.+...+|+ +. |.|+|++|...|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999998 8899999999999998 55 99999999998853
No 30
>KOG0028|consensus
Probab=98.86 E-value=1.2e-08 Score=75.22 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=36.7
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
+++.+|..||.+++|+|+..||+.+++++|+....+++..|+..++. +.|.|+|++|+..++
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 45555666666666666666666666666666555565655555555 556666666655543
No 31
>KOG0044|consensus
Probab=98.85 E-value=1.2e-08 Score=78.65 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=75.0
Q ss_pred hhccccccccCCCcceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHHHHc----CC-------CCC
Q psy107 111 LLDMTRCMETSGTGRLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDALLEV----GY-------QLN 173 (209)
Q Consensus 111 ~~~~~~~~d~~~~g~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~----G~-------~~~ 173 (209)
+..+...+|.+++|.|+|.||+..+..+ +.++-+|+.+|.|++|.|+..|+-.++.+. |- ..+
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~ 145 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETP 145 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccH
Confidence 4456778899999999999998877644 356667999999999999999999988875 32 123
Q ss_pred HHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 174 TEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 174 ~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
.+.++.+++.+|. ++|.++++||+..+..
T Consensus 146 ~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 146 EERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 4667778888888 8999999999998765
No 32
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.79 E-value=2.4e-08 Score=61.97 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=55.6
Q ss_pred HHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHH
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSV 200 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~ 200 (209)
++.+|..+|.+++|.|+..|++.++..+|...+.+.+..++..++. ++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999987 88999999998765
No 33
>KOG0031|consensus
Probab=98.68 E-value=6.9e-08 Score=70.73 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=59.0
Q ss_pred HcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHHHH
Q psy107 136 CSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202 (209)
Q Consensus 136 ~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~ 202 (209)
.+|+++++||...|+|++|.|+..+|+..|.++|-..+++++++|+.+ ..|-|+|--|+.++-.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E---a~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE---APGPINFTVFLTMFGE 92 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh---CCCCeeHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999887 4678999999999854
No 34
>PTZ00183 centrin; Provisional
Probab=98.64 E-value=2.2e-07 Score=69.36 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=80.4
Q ss_pred hhhhhhhccccccccCCCcceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHHHHc-CCCCCHHHHH
Q psy107 106 RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDALLEV-GYQLNTEVLS 178 (209)
Q Consensus 106 ~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~~~~~~~~~ 178 (209)
....++......+|.+++|.|+..||..++..+ ..+..+|..+|.+++|.|+..|+..++... ....+.+.++
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 445667777788899999999999998877643 357889999999999999999999988763 3445677888
Q ss_pred HHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 179 VLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 179 ~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
.++..++. ++|.|+.+||..++..
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 88988987 8999999999998865
No 35
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.64 E-value=9.8e-08 Score=64.83 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=59.2
Q ss_pred HHHHHhhccccccC--CCccccHHHHHHHHH-HcCCCCC----HHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHhh
Q psy107 138 LKYWQTAFKNHTKE--KTGILRAERLRDALL-EVGYQLN----TEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIAF 207 (209)
Q Consensus 138 ~~~~~~~F~~~D~d--~~G~I~~~eL~~~l~-~~G~~~~----~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~~ 207 (209)
+..+...|..++.. ++|+|+..||+.+|. .+|..++ +++++.++..++. ++|.|+|++|+.++..+-.++
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~ 84 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 34567789989865 489999999999997 5676676 8999999999988 899999999999998876543
No 36
>PTZ00184 calmodulin; Provisional
Probab=98.53 E-value=9.2e-07 Score=65.08 Aligned_cols=96 Identities=10% Similarity=0.149 Sum_probs=78.1
Q ss_pred hhhhhhccccccccCCCcceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHHHHc-CCCCCHHHHHH
Q psy107 107 LLNKLLDMTRCMETSGTGRLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDALLEV-GYQLNTEVLSV 179 (209)
Q Consensus 107 ~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~~~~~~~~~~ 179 (209)
.+..+......+|.+++|.|+.+||..++..+ ..+..+|..+|.+++|.|+..++..++... ......+.+..
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 34566677788899999999999998876543 367889999999999999999999998764 23345567788
Q ss_pred HHHHhhC-CCceEeHHHHHHHHHH
Q psy107 180 LTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 180 l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
++..+|. ++|.|+.++|..++..
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHH
Confidence 8888887 8999999999988754
No 37
>KOG0041|consensus
Probab=98.49 E-value=4.2e-07 Score=69.46 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=63.8
Q ss_pred HHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 128 FSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 128 ~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
|.||.. .+|+.+...|+.+|.+.+|+|+..||+..|..+|.+-|.=-++.|+.+++. .+|.|+|-+|+-++..
T Consensus 90 F~eFsr--kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 90 FSEFSR--KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred hhHHHH--HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 555544 466788899999999999999999999999999998888888999999987 8999999999988754
No 38
>KOG0038|consensus
Probab=98.48 E-value=7.3e-07 Score=64.87 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=72.3
Q ss_pred cccccccCCCcceeHHHHHHHHHcHH-------HHHhhccccccCCCccccHHHHHHHHHHcC-CCCCHHHHHHHHHHh-
Q psy107 114 MTRCMETSGTGRLKFSDFKDLMCSLK-------YWQTAFKNHTKEKTGILRAERLRDALLEVG-YQLNTEVLSVLTLRY- 184 (209)
Q Consensus 114 ~~~~~d~~~~g~i~~~eF~~l~~~~~-------~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G-~~~~~~~~~~l~~~~- 184 (209)
+...+..||.|.++|++|+.++.-.. +..-||+++|-|+++.|...+|...++++- -.+++++++.++.++
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvi 155 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVI 155 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 44567789999999999998766332 456689999999999999999999999873 357888877766554
Q ss_pred ---hC-CCceEeHHHHHHHHHH
Q psy107 185 ---MR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 185 ---~~-~~g~i~~~eF~~~~~~ 202 (209)
|- ++|+++|.||-.++.+
T Consensus 156 eEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 156 EEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHhcCCCCCcccHHHHHHHHHh
Confidence 44 8999999999998765
No 39
>KOG0030|consensus
Probab=98.46 E-value=3.7e-07 Score=65.83 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC---CCceEeHHHHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR---KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~---~~g~i~~~eF~~~~~~l~ 204 (209)
.+++++|..||..++|+|+..++..+|+++|.+++++++...+.+... +..+|+|++|+.++..|.
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~va 79 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVA 79 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999998877765 347899999999987764
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.45 E-value=7.4e-07 Score=80.27 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=61.8
Q ss_pred hhccccccccCCCcceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHHHH-------------cCCC
Q psy107 111 LLDMTRCMETSGTGRLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDALLE-------------VGYQ 171 (209)
Q Consensus 111 ~~~~~~~~d~~~~g~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~-------------~G~~ 171 (209)
+.++++.+|.+++|.|+++||..++..+ .+++.+|+.+|+|++|+|+.+||+++|.. +|..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~ 260 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEA 260 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCc
Confidence 6777888999999999999999887753 36899999999999999999999999999 7877
Q ss_pred CCH-HHHHHHHH
Q psy107 172 LNT-EVLSVLTL 182 (209)
Q Consensus 172 ~~~-~~~~~l~~ 182 (209)
++. +++..|++
T Consensus 261 l~~~~~~~~iiH 272 (644)
T PLN02964 261 LGVSDKLNAMIH 272 (644)
T ss_pred ccchhhHHHHHH
Confidence 776 66777763
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.41 E-value=6.8e-07 Score=63.71 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=52.1
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
..+..+|..+|.|++|.|+..||..+. + ...+..+..++..+|. ++|.||++||..++.+.
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 467889999999999999999999876 2 2346778889999988 99999999999999543
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.37 E-value=2.9e-07 Score=49.86 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=26.7
Q ss_pred HHHhhccccccCCCccccHHHHHHHHH-HcC
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALL-EVG 169 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~-~~G 169 (209)
+++.+|+.+|+|++|+|+..||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999999 676
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=98.36 E-value=1.1e-06 Score=79.25 Aligned_cols=96 Identities=8% Similarity=0.066 Sum_probs=79.0
Q ss_pred hhhhhhhccccccccCCCcceeHHHHHHHHHc-----H--HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHH
Q psy107 106 RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCS-----L--KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLS 178 (209)
Q Consensus 106 ~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~-----~--~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~ 178 (209)
..+.++.+....+|.+++|.+ +.....-... . ..++.+|+.+|.|++|.|+..|+..++..+|...+++++.
T Consensus 140 kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 445667777889999999986 4443332221 1 1378999999999999999999999999999888999999
Q ss_pred HHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 179 VLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 179 ~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
.++..+|. ++|.|+++||..++..
T Consensus 219 eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 219 ELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999998 9999999999999876
No 44
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.34 E-value=3.9e-07 Score=48.53 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+++.+|+.+|+|++|+|+.+|++.+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46788999999999999999999988764
No 45
>KOG0377|consensus
Probab=98.24 E-value=8.6e-06 Score=69.23 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=59.2
Q ss_pred HHcHHHHHhhccccccCCCccccHHHHHHHHHHcC----CCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 135 MCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVG----YQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 135 ~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G----~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
++....+..+|...|.|++|.|+.+|++.++.-++ ..++++++.++.+.+|- ++|.|++.||+..+.-+
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 33344677899999999999999999999998764 46788999999988887 99999999999987544
No 46
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.23 E-value=1.1e-06 Score=56.09 Aligned_cols=55 Identities=11% Similarity=0.298 Sum_probs=46.0
Q ss_pred hhccccccccCCCcceeHHHHHHHHHcH----------HHHHhhccccccCCCccccHHHHHHHH
Q psy107 111 LLDMTRCMETSGTGRLKFSDFKDLMCSL----------KYWQTAFKNHTKEKTGILRAERLRDAL 165 (209)
Q Consensus 111 ~~~~~~~~d~~~~g~i~~~eF~~l~~~~----------~~~~~~F~~~D~d~~G~I~~~eL~~~l 165 (209)
++++...+|.+++|.|+.+||..++..+ ..+..+|+.+|.|++|.|+..|+.+++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4556678899999999999999887643 246677999999999999999998764
No 47
>KOG0044|consensus
Probab=98.08 E-value=1.9e-05 Score=61.05 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=69.8
Q ss_pred cCCCcceeHHHHHHHHHcH-------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceE
Q psy107 120 TSGTGRLKFSDFKDLMCSL-------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTL 191 (209)
Q Consensus 120 ~~~~g~i~~~eF~~l~~~~-------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i 191 (209)
...+|.++.++|+.++... .-...+|+.||.|++|.|+..|+-.+|..+--.-.++-++=.++-||. ++|.|
T Consensus 38 ~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 38 ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceE
Confidence 3458999999999998854 245689999999999999999998888876333344555556677887 99999
Q ss_pred eHHHHHHHHHHHHHhh
Q psy107 192 RFGDFVSSVLHLSIAF 207 (209)
Q Consensus 192 ~~~eF~~~~~~l~~~~ 207 (209)
+.+|++.++..+..+.
T Consensus 118 t~~Eml~iv~~i~~m~ 133 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMT 133 (193)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 9999999988776553
No 48
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.05 E-value=3.4e-05 Score=52.28 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHhhccccccCCCccccHHHHHHHHHH-c----CCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHhh
Q psy107 138 LKYWQTAFKNHTKEKTGILRAERLRDALLE-V----GYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIAF 207 (209)
Q Consensus 138 ~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~-~----G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~~ 207 (209)
+..+..+|..|-. +.|+++..||+..|.+ + +-.-+++.++.+++..|. +||.|+|.||+.++..|..++
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac 81 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIAC 81 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3456677888873 3579999999999965 3 334567899999999998 999999999999999887654
No 49
>KOG0037|consensus
Probab=97.88 E-value=4.7e-05 Score=59.20 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=35.1
Q ss_pred HHhhccccccCCCccccHHHHHHHHHHcCC-CCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDALLEVGY-QLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~-~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
+...|...|+|++|.|+.+||+++|...++ +.+.+.++.|+.-+|. ..|.|+|.||..+...|
T Consensus 59 ~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i 123 (221)
T KOG0037|consen 59 LAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI 123 (221)
T ss_pred HHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 344555566666666666666666554432 3455556666555555 55566666665554443
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.78 E-value=5.2e-05 Score=51.92 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=55.7
Q ss_pred Ccchhhhhhhhccccccc-cCCCc-ceeHHHHHHHHHcH-----------HHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 102 TSSGRLLNKLLDMTRCME-TSGTG-RLKFSDFKDLMCSL-----------KYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 102 ~~l~~~l~~~~~~~~~~d-~~~~g-~i~~~eF~~l~~~~-----------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
..+...+.++.+..+.+| .+++| +|+..|++.++... ..+..+++.+|.|++|.|+..|+..++..+
T Consensus 3 ~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 3 TQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 345667777888888888 68998 69999999988542 258899999999999999999999988765
No 51
>KOG2643|consensus
Probab=97.72 E-value=0.00012 Score=62.42 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=63.0
Q ss_pred ccCCCcceeHHHHHHHHHcH----HHHHhhccccccCCCccccHHHHHHHHHH------cCC----------CCCHHHHH
Q psy107 119 ETSGTGRLKFSDFKDLMCSL----KYWQTAFKNHTKEKTGILRAERLRDALLE------VGY----------QLNTEVLS 178 (209)
Q Consensus 119 d~~~~g~i~~~eF~~l~~~~----~~~~~~F~~~D~d~~G~I~~~eL~~~l~~------~G~----------~~~~~~~~ 178 (209)
+.+.+|.|+|.||.-+..-+ ..+.-||+.||.|++|-|+.+|+..+..- +|. ......-.
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ns 288 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNS 288 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhh
Confidence 45678999999998776643 35677899999999999999999888732 222 22222333
Q ss_pred HHHHHh-hC-CCceEeHHHHHHHHHHHHH
Q psy107 179 VLTLRY-MR-KDGTLRFGDFVSSVLHLSI 205 (209)
Q Consensus 179 ~l~~~~-~~-~~g~i~~~eF~~~~~~l~~ 205 (209)
.|...+ .. +++.+++++|++++..|++
T Consensus 289 aL~~yFFG~rg~~kLs~deF~~F~e~Lq~ 317 (489)
T KOG2643|consen 289 ALLTYFFGKRGNGKLSIDEFLKFQENLQE 317 (489)
T ss_pred hHHHHhhccCCCccccHHHHHHHHHHHHH
Confidence 344443 33 8899999999999988763
No 52
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.72 E-value=7.3e-05 Score=51.40 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=57.3
Q ss_pred hhhhhhccccccccCCCcceeHHHHHHHHHcH----HHHHhhccccccCCCccccHHHHHHHHHHc-----CCCCCHH
Q psy107 107 LLNKLLDMTRCMETSGTGRLKFSDFKDLMCSL----KYWQTAFKNHTKEKTGILRAERLRDALLEV-----GYQLNTE 175 (209)
Q Consensus 107 ~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~----~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-----G~~~~~~ 175 (209)
.+..+.+....+|.+++|.|+.+|+..++... .++..+|..+|.+++|.|+..|+..++... |..++.+
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 34566777888999999999999999887643 467889999999999999999999988764 7777654
No 53
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.71 E-value=2.4e-05 Score=40.05 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHhhccccccCCCccccHHHHHHHH
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDAL 165 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l 165 (209)
++.+|+.+|.|++|.|+..|+++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568899999999999999998753
No 54
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.69 E-value=8.3e-05 Score=50.46 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=55.1
Q ss_pred chhhhhhhhcccccccc-CCCcceeHHHHHHHHHc-H-------HHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 104 SGRLLNKLLDMTRCMET-SGTGRLKFSDFKDLMCS-L-------KYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 104 l~~~l~~~~~~~~~~d~-~~~g~i~~~eF~~l~~~-~-------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+...+..+....+.+|. +++|.|+..|++.++.. + ..+...++..|.|++|.|+..|+...+..+
T Consensus 3 lE~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 3 LEKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34566777888888999 99999999999998776 3 357788999999999999999999888765
No 55
>KOG4223|consensus
Probab=97.68 E-value=4.2e-05 Score=62.71 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=68.3
Q ss_pred ccccccccCCCcceeHHHHHHHHH-cH----------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy107 113 DMTRCMETSGTGRLKFSDFKDLMC-SL----------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLT 181 (209)
Q Consensus 113 ~~~~~~d~~~~g~i~~~eF~~l~~-~~----------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~ 181 (209)
+-+..+|.|++|.|+++||..=+. .- .+-...|...|+|++|+++.+||+.-+---++.....+..-|+
T Consensus 204 Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~ 283 (325)
T KOG4223|consen 204 ETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLL 283 (325)
T ss_pred HHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHh
Confidence 445667999999999999976322 21 1223556788999999999999997666567777788899999
Q ss_pred HHhhC-CCceEeHHHHHHH
Q psy107 182 LRYMR-KDGTLRFGDFVSS 199 (209)
Q Consensus 182 ~~~~~-~~g~i~~~eF~~~ 199 (209)
...|. ++|++|++|-+.-
T Consensus 284 ~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 284 HEADEDKDGKLSKEEILEH 302 (325)
T ss_pred hhhccCccccccHHHHhhC
Confidence 99888 9999999987653
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.68 E-value=9.7e-05 Score=50.15 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=51.5
Q ss_pred chhhhhhhhccccc-cccCCCc-ceeHHHHHHHHHcH-----------HHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 104 SGRLLNKLLDMTRC-METSGTG-RLKFSDFKDLMCSL-----------KYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 104 l~~~l~~~~~~~~~-~d~~~~g-~i~~~eF~~l~~~~-----------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+...+..+...... .+.+++| .|+.+||+.++... ..+.++++.+|.|++|.|+..|+-..+..+
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34455566666666 5677765 99999999988754 468899999999999999999999888765
No 57
>KOG0036|consensus
Probab=97.63 E-value=0.0002 Score=60.67 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=38.0
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCC-CCHHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQ-LNTEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~-~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
+++..|+.||.+++|.++..+|.+.|.+++.+ .+.+....++...+. .+|.++|+||.+++.
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH
Confidence 45666666666666666666666666666554 444455555555555 566666666666653
No 58
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.63 E-value=0.00011 Score=50.19 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=54.0
Q ss_pred chhhhhhhhccccccc-cCCCc-ceeHHHHHHHHHc-H----------HHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 104 SGRLLNKLLDMTRCME-TSGTG-RLKFSDFKDLMCS-L----------KYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 104 l~~~l~~~~~~~~~~d-~~~~g-~i~~~eF~~l~~~-~----------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+...+..+.+....+| .+++| .|+..|+..++.. + ..+..+|+.+|.|++|.|+..|+..++..+
T Consensus 4 ~e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 4 LETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3445567778888896 99999 5999999998863 2 458899999999999999999999888765
No 59
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.62 E-value=0.00011 Score=49.62 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=54.1
Q ss_pred hhhhhhhhcccccccc--CCCcceeHHHHHHHHHc-----------HHHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 105 GRLLNKLLDMTRCMET--SGTGRLKFSDFKDLMCS-----------LKYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 105 ~~~l~~~~~~~~~~d~--~~~g~i~~~eF~~l~~~-----------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
...+..+......+|. +++|.|+.+|+..++.. ...+..++..+|.+++|.|+..++..++..+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3456677788888999 89999999999998753 3568889999999999999999999988765
No 60
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.60 E-value=0.00064 Score=47.46 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=54.0
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSI 205 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~ 205 (209)
..+..+|+..|. ++|.|+..+.+..|...| ++.+.+..|..-.|. ++|.++++||+-+|.-+..
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 467788998885 689999999999999987 688999999887787 9999999999998766543
No 61
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.52 E-value=0.00018 Score=38.09 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.7
Q ss_pred HHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 176 VLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 176 ~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
+++.+++.+|. ++|.|+++||+.++.+|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46788999998 99999999999998764
No 62
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.52 E-value=9.2e-05 Score=50.71 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=53.3
Q ss_pred hhhhhhhcccccccc-CC-CcceeHHHHHHHHHc-----------HHHHHhhccccccCCCccccHHHHHHHHHHcCC
Q psy107 106 RLLNKLLDMTRCMET-SG-TGRLKFSDFKDLMCS-----------LKYWQTAFKNHTKEKTGILRAERLRDALLEVGY 170 (209)
Q Consensus 106 ~~l~~~~~~~~~~d~-~~-~g~i~~~eF~~l~~~-----------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~ 170 (209)
..+..+.+....+|. ++ +|.|+.+|+..++.. ...+..+++.+|.+++|.|+..|+..++...+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 345566777888887 87 699999999988763 135888999999999999999999999887654
No 63
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.47 E-value=0.00017 Score=44.05 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=44.2
Q ss_pred ccccccccCCCcceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHH
Q psy107 113 DMTRCMETSGTGRLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDAL 165 (209)
Q Consensus 113 ~~~~~~d~~~~g~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l 165 (209)
.+...+|.+++|.|++++|..++... ..+..+|..+|.+++|.|+..++...+
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 44556788999999999999887754 467889999999999999999987654
No 64
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.45 E-value=0.00027 Score=42.95 Aligned_cols=45 Identities=9% Similarity=0.285 Sum_probs=38.4
Q ss_pred CcceeHHHHHHHHHc-------HHHHHhhccccccCCCccccHHHHHHHHHH
Q psy107 123 TGRLKFSDFKDLMCS-------LKYWQTAFKNHTKEKTGILRAERLRDALLE 167 (209)
Q Consensus 123 ~g~i~~~eF~~l~~~-------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~ 167 (209)
+|.|+.++|+..+.. ..++..+|..+|.|++|+|+..|+..+|..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 688999999887742 246889999999999999999999998864
No 65
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.42 E-value=0.00024 Score=44.92 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=45.4
Q ss_pred cccccccCCCcceeHHHHHHHHHcH----HHHHhhccccccCCCccccHHHHHHHHHH
Q psy107 114 MTRCMETSGTGRLKFSDFKDLMCSL----KYWQTAFKNHTKEKTGILRAERLRDALLE 167 (209)
Q Consensus 114 ~~~~~d~~~~g~i~~~eF~~l~~~~----~~~~~~F~~~D~d~~G~I~~~eL~~~l~~ 167 (209)
+...+|.+++|.|+.+|+..++... ..+..+|..+|.+++|.|+..|+..++..
T Consensus 4 ~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 4 IFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4456789999999999999877533 46788999999999999999999888764
No 66
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.38 E-value=0.00039 Score=47.05 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=53.8
Q ss_pred chhhhhhhhccccccc-cCCCc-ceeHHHHHHHHHc-----H------HHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 104 SGRLLNKLLDMTRCME-TSGTG-RLKFSDFKDLMCS-----L------KYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 104 l~~~l~~~~~~~~~~d-~~~~g-~i~~~eF~~l~~~-----~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+...+.++.+....+| .+++| .|+.+|++.++.. + ..+...++..|.|++|.|+..|+..++..+
T Consensus 3 le~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 3 LEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3456677788888897 79999 6999999999886 3 247888999999999999999998887654
No 67
>KOG0040|consensus
Probab=97.37 E-value=0.00034 Score=67.29 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=57.0
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCC--H-----HHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLN--T-----EVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~--~-----~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
++.-+|++||++++|.++-.+++.+|+++|+.+| + .++++++.-+|+ .+|.|+..||+.+|.+
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 6778999999999999999999999999999773 2 378999999999 8999999999999976
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.30 E-value=0.00027 Score=50.38 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=47.6
Q ss_pred hhhhhccccccccCCCcceeHHHHHHHHHc--HHHHHhhccccccCCCccccHHHHHHHH
Q psy107 108 LNKLLDMTRCMETSGTGRLKFSDFKDLMCS--LKYWQTAFKNHTKEKTGILRAERLRDAL 165 (209)
Q Consensus 108 l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~--~~~~~~~F~~~D~d~~G~I~~~eL~~~l 165 (209)
...+.-+...+|.|++|.|+.+|...+... -......|..+|.|++|.||..|.+..+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 355666778889999999999999877421 1345678999999999999999999988
No 69
>KOG4223|consensus
Probab=97.27 E-value=0.00082 Score=55.29 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=70.0
Q ss_pred hhhhccccccccCCCcceeHHHHHHHHHc--------------------HHHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 109 NKLLDMTRCMETSGTGRLKFSDFKDLMCS--------------------LKYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 109 ~~~~~~~~~~d~~~~g~i~~~eF~~l~~~--------------------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
.++.+.+...|.+.+|.|+++|++..... +...+.-|+.-|.|++|.++.+|+-..|---
T Consensus 113 ~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE 192 (325)
T KOG4223|consen 113 EEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE 192 (325)
T ss_pred HHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh
Confidence 34445566778899999999999765331 2356778999999999999999998877432
Q ss_pred C-CCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 169 G-YQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 169 G-~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
- ..+.+-.+.+-+...|. ++|.|+++||+.-|-+
T Consensus 193 e~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 193 EHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 2 12344456666667777 9999999999987654
No 70
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.24 E-value=0.00072 Score=45.75 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=50.9
Q ss_pred chhhhhhhhcccccccc-CC-CcceeHHHHHHHHHc---------HHHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 104 SGRLLNKLLDMTRCMET-SG-TGRLKFSDFKDLMCS---------LKYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 104 l~~~l~~~~~~~~~~d~-~~-~g~i~~~eF~~l~~~---------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+...+..+..+.+.++. ++ .|.|+.+||+.++.. ..++.+.|+..|.|++|.|+..|+-..+..+
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 34455556666666666 56 789999999999852 2468888999999999999999998888765
No 71
>KOG0046|consensus
Probab=97.23 E-value=0.0008 Score=58.63 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=59.4
Q ss_pred CcceeHHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCC---CHHHHHHHHHHhhC-CCceEeHHHHHH
Q psy107 123 TGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQL---NTEVLSVLTLRYMR-KDGTLRFGDFVS 198 (209)
Q Consensus 123 ~g~i~~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~---~~~~~~~l~~~~~~-~~g~i~~~eF~~ 198 (209)
...++.+|. ..+++.|...| |++|+|+..||..++...+... ..++++.++...+. .+|.++|++|+.
T Consensus 10 ~~~~tq~El-------~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 10 QSQLTQEEL-------RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVG 81 (627)
T ss_pred cccccHHHH-------HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHH
Confidence 344555554 35788999999 9999999999999999987644 46778888877776 899999999999
Q ss_pred HHHHHH
Q psy107 199 SVLHLS 204 (209)
Q Consensus 199 ~~~~l~ 204 (209)
.+..|+
T Consensus 82 ~~~~l~ 87 (627)
T KOG0046|consen 82 IFLNLK 87 (627)
T ss_pred HHHhhh
Confidence 887664
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.19 E-value=0.0025 Score=38.24 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
+++..|++..|+.+...+++.-+..+++..|. ++|.++-+||..++..|
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36788999999999999999999999999988 89999999999888765
No 73
>KOG0034|consensus
Probab=96.94 E-value=0.0059 Score=47.18 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=74.1
Q ss_pred hhhhhhccccccccC-CCcceeHHHHHHHHHcHH--HHHhhccccccCCCcc-ccHHHHHHHHHHcCCCCCHH-HHHHHH
Q psy107 107 LLNKLLDMTRCMETS-GTGRLKFSDFKDLMCSLK--YWQTAFKNHTKEKTGI-LRAERLRDALLEVGYQLNTE-VLSVLT 181 (209)
Q Consensus 107 ~l~~~~~~~~~~d~~-~~g~i~~~eF~~l~~~~~--~~~~~F~~~D~d~~G~-I~~~eL~~~l~~~G~~~~~~-~~~~l~ 181 (209)
-+..++.....++.+ +.|.++.+||..+..... -...++..||.+++|. |+..++-+.|...-..-+.+ -++-..
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF 110 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAF 110 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 345556666667777 899999999998864221 3457889999999988 99999999998875544544 455566
Q ss_pred HHhhC-CCceEeHHHHHHHHHHH
Q psy107 182 LRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 182 ~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
+-||. ++|.|+.+|+.+++..+
T Consensus 111 ~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 111 RVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred HHhcCCCCCcCcHHHHHHHHHHH
Confidence 77887 89999999999988664
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.92 E-value=0.0019 Score=55.57 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=43.5
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
.+..+|+.+|.|++|.|+..|+.. .+.++..+|. ++|.|+++||...+...
T Consensus 335 ~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 335 AAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 467899999999999999999842 4678888887 99999999999987543
No 75
>KOG4666|consensus
Probab=96.85 E-value=0.0017 Score=53.56 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=71.1
Q ss_pred hhhhccccccccCCCcceeHHHHHHHHHc-------HHHHHhhccccccCCCccccHHHHHHHHHH-cCCCCCHHHHHHH
Q psy107 109 NKLLDMTRCMETSGTGRLKFSDFKDLMCS-------LKYWQTAFKNHTKEKTGILRAERLRDALLE-VGYQLNTEVLSVL 180 (209)
Q Consensus 109 ~~~~~~~~~~d~~~~g~i~~~eF~~l~~~-------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~-~G~~~~~~~~~~l 180 (209)
..+..++.++|.+++|.+++-|...-... ..-++-+|++|+.+.+|.+...+|.-+|+. +|. ..=.+-.+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeecccc
Confidence 44567889999999999999887543221 235788999999999999999999988875 353 22334456
Q ss_pred HHHhhC-CCceEeHHHHHHHHHH
Q psy107 181 TLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 181 ~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
...++. .+++|+|++|.+++..
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHh
Confidence 777777 7889999999998754
No 76
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.83 E-value=0.0011 Score=56.96 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=42.1
Q ss_pred ccccccccCCCcceeHHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 113 DMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 113 ~~~~~~d~~~~g~i~~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
.+++.+|.+++|.|+.+||.. ....|..+|.|++|.|+..|++.+++..
T Consensus 338 ~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 338 EIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 345678999999999999953 4678999999999999999999998753
No 77
>KOG2643|consensus
Probab=96.71 E-value=0.011 Score=50.69 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=63.1
Q ss_pred ccccCCCcceeHHHHHHHHHcHH--HHHhhccccccCCCccccHHHHHHHHHHc-CCCCCHHHHHHHHHH----hhCCCc
Q psy107 117 CMETSGTGRLKFSDFKDLMCSLK--YWQTAFKNHTKEKTGILRAERLRDALLEV-GYQLNTEVLSVLTLR----YMRKDG 189 (209)
Q Consensus 117 ~~d~~~~g~i~~~eF~~l~~~~~--~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~~~~~~~~~~l~~~----~~~~~g 189 (209)
.+..+++++++++||...+..++ -++--|..+|+..+|.|+..++...|-.. |.+. +..+.+.++ +...+.
T Consensus 294 FFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~--~~k~~~lkrvk~kf~~~~~ 371 (489)
T KOG2643|consen 294 FFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNS--KKKHKYLKRVKEKFKDDGK 371 (489)
T ss_pred hhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccch--HhHHHHHHHHHHhccCCCC
Confidence 35678899999999999888764 24455999999999999999998877654 4332 333333333 333356
Q ss_pred eEeHHHHHHHHHHHHH
Q psy107 190 TLRFGDFVSSVLHLSI 205 (209)
Q Consensus 190 ~i~~~eF~~~~~~l~~ 205 (209)
.|+++||.+++.-+..
T Consensus 372 gISl~Ef~~Ff~Fl~~ 387 (489)
T KOG2643|consen 372 GISLQEFKAFFRFLNN 387 (489)
T ss_pred CcCHHHHHHHHHHHhh
Confidence 7999999998876654
No 78
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.66 E-value=0.0039 Score=42.11 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=48.2
Q ss_pred hhhhhhhccccccccC--CCcceeHHHHHHHHHc-----------HHHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 106 RLLNKLLDMTRCMETS--GTGRLKFSDFKDLMCS-----------LKYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 106 ~~l~~~~~~~~~~d~~--~~g~i~~~eF~~l~~~-----------~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
..+..+..+....+.. .+|.|+.+|+..++.. ...+..+|+.+|.+++|.|+..|+...+..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3444455555555543 4789999999998852 3568899999999999999999999888765
No 79
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.64 E-value=0.0014 Score=33.22 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHhhccccccCCCccccHHHHHHHHHH
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDALLE 167 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l~~ 167 (209)
++.+|+.+|.+++|.|+..+++.++++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567788888888888888888888764
No 80
>KOG4065|consensus
Probab=96.37 E-value=0.014 Score=40.99 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=45.5
Q ss_pred hhccccccCCCccccHHHHHHHHHHc------CC---C-CCHHHHHHHHHHh---hC--CCceEeHHHHHHH
Q psy107 143 TAFKNHTKEKTGILRAERLRDALLEV------GY---Q-LNTEVLSVLTLRY---MR--KDGTLRFGDFVSS 199 (209)
Q Consensus 143 ~~F~~~D~d~~G~I~~~eL~~~l~~~------G~---~-~~~~~~~~l~~~~---~~--~~g~i~~~eF~~~ 199 (209)
.-|+.+|-|++|.++.-||..+++.. |. + .++.+++.|+..+ ++ ++|.|+|.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 56899999999999999999999865 32 2 3567888887654 22 7999999999874
No 81
>KOG0751|consensus
Probab=96.26 E-value=0.0087 Score=52.12 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=44.7
Q ss_pred ccccccCCCcceeHHHHHHHHH----cHHHHHhhccccccCCCccccHHHHHHHHHHcC
Q psy107 115 TRCMETSGTGRLKFSDFKDLMC----SLKYWQTAFKNHTKEKTGILRAERLRDALLEVG 169 (209)
Q Consensus 115 ~~~~d~~~~g~i~~~eF~~l~~----~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G 169 (209)
-+..|...+|.|+|+||+.+=. .-.....+|+.||+.++|.+|.++..+++++..
T Consensus 80 a~iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 80 ASIADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HhhhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 3445677889999999987522 224578899999999999999999999998863
No 82
>KOG0377|consensus
Probab=96.21 E-value=0.0057 Score=52.54 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=45.6
Q ss_pred ccccccccCCCcceeHHHHHHHHHcH----------HHHHhhccccccCCCccccHHHHHHHHHH
Q psy107 113 DMTRCMETSGTGRLKFSDFKDLMCSL----------KYWQTAFKNHTKEKTGILRAERLRDALLE 167 (209)
Q Consensus 113 ~~~~~~d~~~~g~i~~~eF~~l~~~~----------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~ 167 (209)
-+...+|.|++|.|+.+||...|.-+ ..+.+.=...|-|++|+|+..|+-+|++-
T Consensus 551 tiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 551 TIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 45677899999999999999988844 24555667799999999999999999874
No 83
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.13 E-value=0.023 Score=37.67 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=49.9
Q ss_pred HHhhccccccCCCccccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhhC-----CCceEeHHHHHHHHHH
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDALLEV-GY-QLNTEVLSVLTLRYMR-----KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~-~~~~~~~~~l~~~~~~-----~~g~i~~~eF~~~~~~ 202 (209)
+..+|..+-. +.+.++..+|+.-|..- |. .++.+++..++.++.. ..+.|++++|..+|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5677888854 68899999999999876 44 5789999999999853 5789999999999864
No 84
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.94 E-value=0.011 Score=40.06 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHHHHHhcCCccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHcHH
Q psy107 62 EKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLK 139 (209)
Q Consensus 62 eKafak~~G~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~~ 139 (209)
-..|-|..|....++.+++...|..-.+.... -+.+ -..+.+++..+|.|++|.|+|.||..+...+.
T Consensus 11 I~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~---~~~d-------~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 11 MLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLK---NQND-------PMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHc---CCCC-------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 35677778888889888888777653222111 0111 14456677788999999999999999877664
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.91 E-value=0.016 Score=34.75 Aligned_cols=44 Identities=20% Similarity=0.462 Sum_probs=32.9
Q ss_pred ceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 125 RLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 125 ~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+++|.|.+.+.+.+ .....+|+..|++++|.+...|+....+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36777777776643 245678999999999999999998877653
No 86
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.73 E-value=0.0021 Score=45.56 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHH
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSS 199 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~ 199 (209)
+.--|..+|.|++|.++..||+.+...+ ..++.=+...+...|. +++.|++.|+..|
T Consensus 56 ~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 56 VHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4445899999999999999998776544 2233446667777776 8999999999765
No 87
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.21 E-value=0.047 Score=27.63 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.6
Q ss_pred HHHHHHHhhC-CCceEeHHHHHHHH
Q psy107 177 LSVLTLRYMR-KDGTLRFGDFVSSV 200 (209)
Q Consensus 177 ~~~l~~~~~~-~~g~i~~~eF~~~~ 200 (209)
++..+..+|. ++|.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3557778887 99999999998853
No 88
>PF14658 EF-hand_9: EF-hand domain
Probab=95.21 E-value=0.064 Score=34.05 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=45.4
Q ss_pred cccccccCCCcceeHHHHHHHHHcH-------HHHHhhccccccCCC-ccccHHHHHHHHHH
Q psy107 114 MTRCMETSGTGRLKFSDFKDLMCSL-------KYWQTAFKNHTKEKT-GILRAERLRDALLE 167 (209)
Q Consensus 114 ~~~~~d~~~~g~i~~~eF~~l~~~~-------~~~~~~F~~~D~d~~-G~I~~~eL~~~l~~ 167 (209)
+.+++|+++.|.|...+++.+++.+ .+++...+.+|+++. |.|+.+.+..+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4567889999999999998887754 368888899999998 99999999988874
No 89
>KOG2562|consensus
Probab=95.13 E-value=0.086 Score=45.71 Aligned_cols=88 Identities=19% Similarity=0.336 Sum_probs=60.9
Q ss_pred cccccccCCCcceeHHHHHH--HHHcH------------------HHHHhh---ccccccCCCccccHHHHHHHHHHcCC
Q psy107 114 MTRCMETSGTGRLKFSDFKD--LMCSL------------------KYWQTA---FKNHTKEKTGILRAERLRDALLEVGY 170 (209)
Q Consensus 114 ~~~~~d~~~~g~i~~~eF~~--l~~~~------------------~~~~~~---F~~~D~d~~G~I~~~eL~~~l~~~G~ 170 (209)
+.-.++...+|.|...+.++ +...+ .+...+ |..+|.|++|.|+..+|...-...
T Consensus 230 IFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t-- 307 (493)
T KOG2562|consen 230 IFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT-- 307 (493)
T ss_pred hheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc--
Confidence 34455778899999887653 11111 122333 777999999999999998765433
Q ss_pred CCCHHHHHHHHHHhhC-----CCceEeHHHHHHHHHHHH
Q psy107 171 QLNTEVLSVLTLRYMR-----KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 171 ~~~~~~~~~l~~~~~~-----~~g~i~~~eF~~~~~~l~ 204 (209)
++...++.++.++.. .+|.|+|++|+.++..++
T Consensus 308 -lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 308 -LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred -hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 566777777774332 689999999999987643
No 90
>KOG2562|consensus
Probab=95.04 E-value=0.1 Score=45.32 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=56.4
Q ss_pred cCCCcceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHHHHc-------CC-CCC-HHHHHHHHHHh
Q psy107 120 TSGTGRLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDALLEV-------GY-QLN-TEVLSVLTLRY 184 (209)
Q Consensus 120 ~~~~g~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-------G~-~~~-~~~~~~l~~~~ 184 (209)
.-.+|+|++++|.-..-.+ ..+.=.|+.+|.+++|.++..||+.....- |. .++ ++.+.+|..-+
T Consensus 326 ~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMv 405 (493)
T KOG2562|consen 326 VKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMV 405 (493)
T ss_pred eeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHh
Confidence 3456889999987654432 245667999999999999999998776542 42 333 33444455555
Q ss_pred hC-CCceEeHHHHHHH
Q psy107 185 MR-KDGTLRFGDFVSS 199 (209)
Q Consensus 185 ~~-~~g~i~~~eF~~~ 199 (209)
.+ ..+.|++.||..+
T Consensus 406 kP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 406 KPEDENKITLQDLKGS 421 (493)
T ss_pred CccCCCceeHHHHhhc
Confidence 55 6899999999874
No 91
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.76 E-value=0.069 Score=28.29 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=21.6
Q ss_pred HHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 176 VLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 176 ~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
+++.++..+|. ++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 35677888888 999999999999987
No 92
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.60 E-value=0.29 Score=36.64 Aligned_cols=61 Identities=13% Similarity=0.282 Sum_probs=47.6
Q ss_pred hccccccCCCccccHHHHHHHHHHcCC---CCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHH
Q psy107 144 AFKNHTKEKTGILRAERLRDALLEVGY---QLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 144 ~F~~~D~d~~G~I~~~eL~~~l~~~G~---~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~ 204 (209)
+|..|-..+...++...+..+++.+|+ .++..+++.++.++.. +...|+|++|+.++..|-
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 455555555668999999999999874 6889999999999876 667899999999987763
No 93
>KOG0042|consensus
Probab=94.38 E-value=0.11 Score=46.34 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=58.7
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~ 204 (209)
..+.-|..+|.|+.|+++..++..+|++.+..++++.++.+..+.+. -+|.++..||.+++..++
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 45677899999999999999999999999988999999999999988 699999999999987654
No 94
>KOG0040|consensus
Probab=93.78 E-value=0.21 Score=49.24 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=65.4
Q ss_pred hhhhhhhhccccccccCCCcceeHHHHHHHHHcH-------------HHHHhhccccccCCCccccHHHHH---------
Q psy107 105 GRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSL-------------KYWQTAFKNHTKEKTGILRAERLR--------- 162 (209)
Q Consensus 105 ~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~-------------~~~~~~F~~~D~d~~G~I~~~eL~--------- 162 (209)
...+.+..-|..-+|.+.+|.++..+|....+.+ -.++......|++.+|+|+..+..
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 3566677777888899999999999998765532 167888888999999988766544
Q ss_pred ---------HHHHHcCC------------CCCHHHHHHHHHHhhC----C-----CceEeHHHHHHHH
Q psy107 163 ---------DALLEVGY------------QLNTEVLSVLTLRYMR----K-----DGTLRFGDFVSSV 200 (209)
Q Consensus 163 ---------~~l~~~G~------------~~~~~~~~~l~~~~~~----~-----~g~i~~~eF~~~~ 200 (209)
++++++.- ++|.++.+-.+.++.+ . ...++|.+|++.+
T Consensus 2329 NI~s~~eIE~AfraL~a~~~yvtke~~~~~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2329 NILSSEEIEDAFRALDAGKPYVTKEELYQNLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccchHHHHHHHHHhhcCCccccHHHHHhcCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 44444421 5566666665555543 1 2347788887754
No 95
>KOG0041|consensus
Probab=93.77 E-value=0.21 Score=38.76 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=65.2
Q ss_pred hhhhhhhccccccccCCCcceeHHHHHHHHHcHH------HHHhhccccccCCCccccHHHHHHHHHHc--CCCCCHHHH
Q psy107 106 RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLK------YWQTAFKNHTKEKTGILRAERLRDALLEV--GYQLNTEVL 177 (209)
Q Consensus 106 ~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~~------~~~~~F~~~D~d~~G~I~~~eL~~~l~~~--G~~~~~~~~ 177 (209)
..+.....+...+|.+.+|.|++.|.+.++.++. .++..-+..|.|.+|+|+..|+--+++.. |.--.+..+
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~ 175 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGL 175 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHH
Confidence 4456667888889999999999999999988763 57788888999999999999987777653 432234444
Q ss_pred HHHHHH--hhC-CCceEeHHHHHH
Q psy107 178 SVLTLR--YMR-KDGTLRFGDFVS 198 (209)
Q Consensus 178 ~~l~~~--~~~-~~g~i~~~eF~~ 198 (209)
..|.+- +|- ..|..-=..|..
T Consensus 176 ~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 176 LRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred HHHHHhcccchhhhhhhhHHHHHH
Confidence 444433 443 444444444433
No 96
>KOG1029|consensus
Probab=92.99 E-value=0.18 Score=46.45 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=52.0
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~ 204 (209)
.+++..|..+|+..+|+++...-|.+|...| ++..++-.|..-.|- +||.++-+||+-.|.-+.
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 3688999999999999999999999999887 466666665544443 999999999998875543
No 97
>KOG0751|consensus
Probab=92.91 E-value=0.19 Score=44.17 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=43.4
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC--CCceEeHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR--KDGTLRFGDFVSS 199 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~--~~g~i~~~eF~~~ 199 (209)
+-.++|+..|+.++|.|+.-+++..+...-.++....++..+..+.. ..-.++|..|...
T Consensus 180 ~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 180 HAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHH
Confidence 45678999999999999999999999887666655666665544443 3345776666544
No 98
>KOG4251|consensus
Probab=92.75 E-value=0.14 Score=40.93 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=62.3
Q ss_pred hccccccccCCCcceeHHHHHHH----------------HHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHH
Q psy107 112 LDMTRCMETSGTGRLKFSDFKDL----------------MCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTE 175 (209)
Q Consensus 112 ~~~~~~~d~~~~g~i~~~eF~~l----------------~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~ 175 (209)
.+++..+|.+++..++..||.++ |.+ .+.++.=...|.|++|.++..||.....-..+.+.-.
T Consensus 239 keivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvk-dRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~aln 317 (362)
T KOG4251|consen 239 KEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVK-DRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALN 317 (362)
T ss_pred HHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHH-HHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHH
Confidence 34566778899989999999764 111 1222222468999999999999999877666767667
Q ss_pred HHHHHHHHhhC-CCceEeHHHHHHH
Q psy107 176 VLSVLTLRYMR-KDGTLRFGDFVSS 199 (209)
Q Consensus 176 ~~~~l~~~~~~-~~g~i~~~eF~~~ 199 (209)
++..++.-.+. ++..++.++.+..
T Consensus 318 e~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 318 EVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHhhhccCCCcccCHHHHHHH
Confidence 77776655555 7788988887664
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.72 E-value=0.15 Score=25.17 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 177 LSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 177 ~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
++.++..++. ++|.|++++|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4566777777 7899999999998764
No 100
>KOG4251|consensus
Probab=92.54 E-value=0.096 Score=41.88 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=40.9
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHH-cCCCCC--HHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLE-VGYQLN--TEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~-~G~~~~--~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
..+..+|+..|.|.+|+|++.|+++-..+ ...++. .++-+..+..+|+ ++|.|+++||---+.
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 45778899999999999999998765443 222221 1222223334566 899999999865554
No 101
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.69 E-value=0.15 Score=32.74 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=38.4
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC--------CCceEeHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR--------KDGTLRFGDFVSS 199 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~--------~~g~i~~~eF~~~ 199 (209)
.++..+|+.+ .++.++|+..||++.|. +++.+-++.++.. ..+..+|..|++.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 3577899998 67789999999999853 3444666666654 1377999998753
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=90.28 E-value=1.3 Score=40.27 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=58.1
Q ss_pred CCcceeHHHHHHHHHcH--------HHHHhhccccccCCCccccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhhC-----
Q psy107 122 GTGRLKFSDFKDLMCSL--------KYWQTAFKNHTKEKTGILRAERLRDALLEV-GY-QLNTEVLSVLTLRYMR----- 186 (209)
Q Consensus 122 ~~g~i~~~eF~~l~~~~--------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~-~~~~~~~~~l~~~~~~----- 186 (209)
+.|.++|++|....+.+ .++..+|..+-.+ .+.++.++|+..|... |. ..+.+.++.|+.++-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 45899999997665543 3788899888544 3689999999999986 32 3566777777654421
Q ss_pred ---CCceEeHHHHHHHHHH
Q psy107 187 ---KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 187 ---~~g~i~~~eF~~~~~~ 202 (209)
+...++++.|..++..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 2345899999999863
No 103
>KOG0035|consensus
Probab=89.27 E-value=0.83 Score=43.08 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=51.0
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCH-HH----HHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNT-EV----LSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~-~~----~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
.+++..|..+|+...|..+..++..+|.++|++..+ ++ +..++...+. ..|.++|.+|...|.+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 578899999999999999999999999999998764 22 3333333344 4588999999999876
No 104
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=88.07 E-value=0.075 Score=37.63 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=35.0
Q ss_pred hhhccccccccCCCcceeHHHHHHHHHcH---H-HHHhhccccccCCCccccHHHHHH
Q psy107 110 KLLDMTRCMETSGTGRLKFSDFKDLMCSL---K-YWQTAFKNHTKEKTGILRAERLRD 163 (209)
Q Consensus 110 ~~~~~~~~~d~~~~g~i~~~eF~~l~~~~---~-~~~~~F~~~D~d~~G~I~~~eL~~ 163 (209)
.+.=+...+|.+++|.|+-.|...+...+ . -.+..|+..|.|++|.||..|...
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33445678899999999999987764422 1 245667889999999999998653
No 105
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=87.39 E-value=1.6 Score=30.35 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=39.4
Q ss_pred cccccccCCCcceeHHHHHHHHHc----HHHHHhhccccccCCCccccHHHHHHHHH
Q psy107 114 MTRCMETSGTGRLKFSDFKDLMCS----LKYWQTAFKNHTKEKTGILRAERLRDALL 166 (209)
Q Consensus 114 ~~~~~d~~~~g~i~~~eF~~l~~~----~~~~~~~F~~~D~d~~G~I~~~eL~~~l~ 166 (209)
+...++ .++|.|+-++-..++.+ ...+.+++...|.|++|+++..|+--++.
T Consensus 15 ~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 15 IFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 333444 35689998888877663 35788999999999999999999988775
No 106
>KOG2243|consensus
Probab=86.70 E-value=1.2 Score=44.08 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=46.6
Q ss_pred HhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHH
Q psy107 142 QTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSV 200 (209)
Q Consensus 142 ~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~ 200 (209)
...|+.+|.|+.|.|+..++..++..-. +.+..+++-++.-... .+...+|++|+.-+
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4579999999999999999999997543 4677777777655544 67789999999875
No 107
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.93 E-value=3.1 Score=31.65 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=16.9
Q ss_pred hhhhccccccccCCCcceeHHH
Q psy107 109 NKLLDMTRCMETSGTGRLKFSD 130 (209)
Q Consensus 109 ~~~~~~~~~~d~~~~g~i~~~e 130 (209)
..+++.++-+|.|++|.|...|
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~d 28 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWD 28 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHH
Confidence 3456778889999999987544
No 108
>KOG0169|consensus
Probab=81.79 E-value=2.3 Score=39.32 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=42.9
Q ss_pred cccccccCCCcceeHHHHHHHHHcH------HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCC
Q psy107 114 MTRCMETSGTGRLKFSDFKDLMCSL------KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRK 187 (209)
Q Consensus 114 ~~~~~d~~~~g~i~~~eF~~l~~~~------~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~ 187 (209)
+....|.+.+|.+++.+-..+..++ ......|+..|..++|++...+.++....++... ++..++.++..+
T Consensus 141 ~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~ 217 (746)
T KOG0169|consen 141 IFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG 217 (746)
T ss_pred HHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC
Confidence 3344455555665555544443322 1233444444555556666666555555554332 444455444444
Q ss_pred CceEeHHHHHHHHHH
Q psy107 188 DGTLRFGDFVSSVLH 202 (209)
Q Consensus 188 ~g~i~~~eF~~~~~~ 202 (209)
.+.++.++.+.++..
T Consensus 218 ~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 218 KEYLSTDDLLRFLEE 232 (746)
T ss_pred CCccCHHHHHHHHHH
Confidence 555555555555544
No 109
>KOG0169|consensus
Probab=81.27 E-value=5 Score=37.28 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=45.9
Q ss_pred HHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
+...|+..|++++|.++..+..+++..+...+...-+..+.++.+. .++.+...+|.+....
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 3456777888888888888888888877777777777777777766 7777777777776554
No 110
>KOG0046|consensus
Probab=78.12 E-value=2.7 Score=37.37 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCccccccCchHHhHHhhhCCceEEeeccCCCCcchhhhhhhhccccccccCCCcceeHHHHHHHHHcH
Q psy107 60 LLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSL 138 (209)
Q Consensus 60 lleKafak~~G~y~~i~~~~~~~~l~~ltG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~ 138 (209)
-+.-+|.++....+.++-.++..++.... .+. -...-+++.+++...+.+.+|+++|+||..++..+
T Consensus 20 ~l~~kF~~~d~~~G~v~~~~l~~~f~k~~-~~~-----------g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLDDQKGYVTVYELPDAFKKAK-LPL-----------GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhcCCCCeeehHHhHHHHHHhc-ccc-----------cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 45567888888888898888888887641 111 01233677788888899999999999999976654
No 111
>KOG4578|consensus
Probab=77.33 E-value=2.8 Score=35.13 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=9.3
Q ss_pred ccccccCCCccccHHHH
Q psy107 145 FKNHTKEKTGILRAERL 161 (209)
Q Consensus 145 F~~~D~d~~G~I~~~eL 161 (209)
|..+|+|+++.|...|.
T Consensus 339 F~qLdkN~nn~i~rrEw 355 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREW 355 (421)
T ss_pred eeeecccccCccchhhc
Confidence 55555555555555553
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=75.89 E-value=20 Score=27.33 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=42.0
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHc-------CCCCCHHHHHHHHHHhhCCCceEeHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEV-------GYQLNTEVLSVLTLRYMRKDGTLRFGDFVSS 199 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-------G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~ 199 (209)
+++.++|+.+++.+.+.++..|+.++++.- |+--+.-|...+..-..+.+|.+.-++-..+
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhh
Confidence 356688999999888999999999999862 4433444555544444457888876654433
No 113
>KOG4578|consensus
Probab=73.82 E-value=3.4 Score=34.65 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=41.9
Q ss_pred hccccccccCCCcceeHHHHH---HH---HHcHHH-HHhhccccccCCCccccHHHHHHHHHHc
Q psy107 112 LDMTRCMETSGTGRLKFSDFK---DL---MCSLKY-WQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 112 ~~~~~~~d~~~~g~i~~~eF~---~l---~~~~~~-~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
+=.+..+|.|.++.|+-.|.+ .+ |.+..+ .++.|+..|.|++-+|+..|++..|...
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 344677889999988876643 33 223322 3567899999999999999999998753
No 114
>KOG3866|consensus
Probab=73.78 E-value=7.7 Score=32.36 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHHHHHHHHcHH-------HHHhhccccccCCCccccHHHHHHHHHHc-----CCCCCHHHHHH-----------HHHHh
Q psy107 128 FSDFKDLMCSLK-------YWQTAFKNHTKEKTGILRAERLRDALLEV-----GYQLNTEVLSV-----------LTLRY 184 (209)
Q Consensus 128 ~~eF~~l~~~~~-------~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-----G~~~~~~~~~~-----------l~~~~ 184 (209)
-.....+|.... .-+..|..+|.|++|.++..||..+++.- ...-.++++.+ ++..+
T Consensus 226 kdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~v 305 (442)
T KOG3866|consen 226 KDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQV 305 (442)
T ss_pred HHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 456667777543 23567999999999999999999888652 11112222222 23344
Q ss_pred hC-CCceEeHHHHHHHH
Q psy107 185 MR-KDGTLRFGDFVSSV 200 (209)
Q Consensus 185 ~~-~~g~i~~~eF~~~~ 200 (209)
|. .+.-|++++|++.-
T Consensus 306 DtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 306 DTNQDRLVTLEEFLNDT 322 (442)
T ss_pred ccchhhhhhHHHHHhhh
Confidence 55 67789999998764
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=73.70 E-value=19 Score=24.30 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHc-------CC----CCCHHHHHHHHHHhhCCCceEeHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEV-------GY----QLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-------G~----~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~ 202 (209)
+++-+|+.. .|++|.++...|...|.++ |. .-.+..++..+.... ....|+.++|+..+..
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~-~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ-LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT-T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC-CCCccCHHHHHHHHHh
Confidence 456667766 6778899998888888764 32 124555555554432 4667999999988753
No 116
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=73.51 E-value=8.3 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHH
Q psy107 158 AERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSV 200 (209)
Q Consensus 158 ~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~ 200 (209)
..|...+|.++|| ++.+++..+.++.. ...++.++.++..
T Consensus 3 ~~d~~~AL~~LGy--~~~e~~~av~~~~~-~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLGY--SKAEAQKAVSKLLE-KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHH-STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHhhc-CCCCCHHHHHHHH
Confidence 4688999999997 67888888887764 4445667766553
No 117
>KOG3555|consensus
Probab=73.23 E-value=4.1 Score=34.42 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=23.2
Q ss_pred ccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHH
Q psy107 145 FKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSV 200 (209)
Q Consensus 145 F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~ 200 (209)
|..+|.|.+|.++..||+.+-.. -.+.=++.++...|. .+|.|+-.|+..++
T Consensus 256 FnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 256 FNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhh
Confidence 55555555555555555443211 122233334444444 45555555554444
No 118
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=72.26 E-value=5.2 Score=26.09 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=18.7
Q ss_pred CCeEEEEEEeeCCeEEEEEecCCccc
Q psy107 15 FPGVFRFRLWWCGEWVEVLVDDRLPT 40 (209)
Q Consensus 15 ~~G~y~~~~~~~g~~~~v~iDd~~p~ 40 (209)
+.|.|..||.++|.|+ +|...|+
T Consensus 44 ~~g~y~YkF~Vdg~w~---~d~~~~~ 66 (79)
T cd02859 44 PPGKYQYKFIVDGEWR---HSPDLPT 66 (79)
T ss_pred CCCCEEEEEEECCEEE---eCCCCCc
Confidence 4599999999999985 5776775
No 119
>KOG3555|consensus
Probab=69.15 E-value=5.3 Score=33.79 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=53.8
Q ss_pred hccccccccCCCcceeHHHHHHHHHcH--HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy107 112 LDMTRCMETSGTGRLKFSDFKDLMCSL--KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTL 182 (209)
Q Consensus 112 ~~~~~~~d~~~~g~i~~~eF~~l~~~~--~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~ 182 (209)
-=|++.+|.+.++.|+..|...+...- .-++..|...|...+|.|+..|--..+..-+ .+-.+++..+..
T Consensus 253 gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~riqk 324 (434)
T KOG3555|consen 253 GWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRIQK 324 (434)
T ss_pred hhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhhcccccCccccchhhhhhccCC-CccccHHHHHHh
Confidence 346788899999999999998886532 3456778999999999999999998888777 344455555443
No 120
>KOG1707|consensus
Probab=69.12 E-value=7 Score=35.43 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=41.1
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCC-CH-HHHHHHHHHhhCCCceEeHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQL-NT-EVLSVLTLRYMRKDGTLRFGDFVSSV 200 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~-~~-~~~~~l~~~~~~~~g~i~~~eF~~~~ 200 (209)
-+..+|..||.|++|-++..||..++..++... +. ...+... ....|+++|.-|+..-
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~---~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV---KNERGWLTLNGFLSQW 375 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce---ecccceeehhhHHHHH
Confidence 577899999999999999999999999985422 11 0111100 0157899999887764
No 121
>KOG4666|consensus
Probab=69.08 E-value=4.1 Score=34.19 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=57.4
Q ss_pred CCCcceeHHHHHHHHH--cHHHHHhhccccccCCCccccHHHHHHHHHHc-CCCCCHHHHHHHHHHhhC-CCceEeHHHH
Q psy107 121 SGTGRLKFSDFKDLMC--SLKYWQTAFKNHTKEKTGILRAERLRDALLEV-GYQLNTEVLSVLTLRYMR-KDGTLRFGDF 196 (209)
Q Consensus 121 ~~~g~i~~~eF~~l~~--~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~~~~~~~~~~l~~~~~~-~~g~i~~~eF 196 (209)
.+.+.|...||-.-.+ .-..+...|..||.+++|.++..|--..|.-+ |-..+...++.-.++++- .||.+.=.+|
T Consensus 239 ~kg~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~l 318 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHIL 318 (412)
T ss_pred ccCCCcceeEeeeeeecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHH
Confidence 3456666666632111 11356788999999999999988877776653 777888889988889887 7888876666
Q ss_pred HHHH
Q psy107 197 VSSV 200 (209)
Q Consensus 197 ~~~~ 200 (209)
..++
T Consensus 319 s~il 322 (412)
T KOG4666|consen 319 SLIL 322 (412)
T ss_pred HHHH
Confidence 5554
No 122
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=67.50 E-value=13 Score=23.37 Aligned_cols=33 Identities=6% Similarity=0.188 Sum_probs=28.8
Q ss_pred CccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 153 TGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 153 ~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
+=.|+.+-+|..+.++|..+|+..++.++..+.
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 346899999999999999999999999887653
No 123
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=66.78 E-value=35 Score=22.77 Aligned_cols=32 Identities=6% Similarity=-0.038 Sum_probs=27.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
.||..||...-++.|.+++.++.+.++.-+..
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 58899999999999999999999988876654
No 124
>KOG1265|consensus
Probab=65.90 E-value=87 Score=30.28 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=60.7
Q ss_pred eeHHHHHHHHHcH---HHHHhhccccccCCCccccHHHHHHHHHHcC----------CCCCHHHHHHHHHHhhC-----C
Q psy107 126 LKFSDFKDLMCSL---KYWQTAFKNHTKEKTGILRAERLRDALLEVG----------YQLNTEVLSVLTLRYMR-----K 187 (209)
Q Consensus 126 i~~~eF~~l~~~~---~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G----------~~~~~~~~~~l~~~~~~-----~ 187 (209)
..++-|..++.++ .++..+|..+-.++.-+++..+|...|..-- ..+++..++.|+..+.+ .
T Consensus 205 f~~e~f~~~l~klcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred ccHHHHHHHHHhcCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 4466666766654 4788999999888888999999999997641 24577899999999875 4
Q ss_pred CceEeHHHHHHHHHH
Q psy107 188 DGTLRFGDFVSSVLH 202 (209)
Q Consensus 188 ~g~i~~~eF~~~~~~ 202 (209)
.|.|+-+-|+.++..
T Consensus 285 ~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccccchhhhHHHhhC
Confidence 789999999998754
No 125
>KOG2871|consensus
Probab=65.57 E-value=6.9 Score=33.43 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=43.6
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHH-HhhC-CCceEeHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTL-RYMR-KDGTLRFGDFV 197 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~-~~~~-~~g~i~~~eF~ 197 (209)
+++++|+.+|+.+.|+|+..-++.++..+...+++.+.-.+++ .+++ +-|-|-..+|+
T Consensus 310 q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 310 QLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred HHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 6889999999999999999999999999986677655555443 4455 44555555544
No 126
>KOG3449|consensus
Probab=65.16 E-value=16 Score=25.57 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=37.5
Q ss_pred HhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 142 QTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 142 ~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
..+|-.++.-++-..+..+++.+|.+.|..+.++.++.++.++..
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G 48 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG 48 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC
Confidence 345666666777788999999999999999999999999988753
No 127
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.80 E-value=16 Score=21.38 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=23.2
Q ss_pred Ccccc-HHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy107 153 TGILR-AERLRDALLEVGYQLNTEVLSVLTLRY 184 (209)
Q Consensus 153 ~G~I~-~~eL~~~l~~~G~~~~~~~~~~l~~~~ 184 (209)
.|.|+ ..++-+.|...|+.++++.++.+++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 56676 445555666679999999998887653
No 128
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=62.40 E-value=8.8 Score=18.47 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=10.7
Q ss_pred ccCCCccccHHHHHH
Q psy107 149 TKEKTGILRAERLRD 163 (209)
Q Consensus 149 D~d~~G~I~~~eL~~ 163 (209)
|.|++|.|++.++.-
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 568888888877654
No 129
>KOG0038|consensus
Probab=61.25 E-value=12 Score=27.69 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=9.9
Q ss_pred CCceEeHHHHHHHHHH
Q psy107 187 KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 187 ~~g~i~~~eF~~~~~~ 202 (209)
|.|.++|++|+.++..
T Consensus 84 G~GnlsfddFlDmfSV 99 (189)
T KOG0038|consen 84 GRGNLSFDDFLDMFSV 99 (189)
T ss_pred CCCcccHHHHHHHHHH
Confidence 5666666666666544
No 130
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=61.19 E-value=17 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=27.6
Q ss_pred cccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEe
Q psy107 148 HTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLR 192 (209)
Q Consensus 148 ~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~ 192 (209)
+..|.+|+++.+||-+.+..-|..++.++++.++..-+.+-..|.
T Consensus 25 L~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~ 69 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELR 69 (186)
T ss_dssp ----TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE
T ss_pred CccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEE
Confidence 346789999999999999988888999999999877554444444
No 131
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=60.07 E-value=42 Score=21.33 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 156 I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
++..++..++...|+.++.+++.+++++-+.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~ 44 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDE 44 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCC
Confidence 4567899999999999999999999987654
No 132
>PRK00523 hypothetical protein; Provisional
Probab=59.94 E-value=21 Score=23.00 Aligned_cols=32 Identities=6% Similarity=0.121 Sum_probs=28.5
Q ss_pred ccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 154 GILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 154 G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
=.|+.+-+|..+.++|..+|+..++.+++.+.
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 46899999999999999999999999887653
No 133
>KOG1707|consensus
Probab=59.61 E-value=21 Score=32.54 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=46.3
Q ss_pred HHHHHhhccccccCCCccccHHHHHHHHHH-cCCCCCHHHHHHHHHHhhC------CCceEeHHHHHHHHH
Q psy107 138 LKYWQTAFKNHTKEKTGILRAERLRDALLE-VGYQLNTEVLSVLTLRYMR------KDGTLRFGDFVSSVL 201 (209)
Q Consensus 138 ~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~-~G~~~~~~~~~~l~~~~~~------~~g~i~~~eF~~~~~ 201 (209)
+..|..+|++.|.|.+|.++-.||-..-.. +|-++...+++.+...... -+..++..-|+-+..
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 457899999999999999999998766554 4778877766665544432 245667777766543
No 134
>smart00426 TEA TEA domain.
Probab=59.07 E-value=6.9 Score=24.92 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=15.6
Q ss_pred CCCccchHHHHHHHHHhcC
Q psy107 52 HSDQFWPGLLEKAYAKLHG 70 (209)
Q Consensus 52 ~~~~~W~~lleKafak~~G 70 (209)
+.+..||+-||.||....-
T Consensus 1 dg~~vWp~~lE~Af~~aL~ 19 (68)
T smart00426 1 DAEGVWSPDIEQAFQEALA 19 (68)
T ss_pred CCCCcCcHHHHHHHHHHHH
Confidence 3568999999999987663
No 135
>KOG1955|consensus
Probab=58.31 E-value=29 Score=31.03 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=48.4
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
-+-.-|+..-.|-.|.|+..--++.+...- ++-.++..|..-.|- .||.++++||...|.
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 355678888899999999999999988764 566778887766665 899999999988764
No 136
>KOG0045|consensus
Probab=57.99 E-value=0.97 Score=41.35 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=62.1
Q ss_pred hhhhhccccccccCCCcceeHHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCC
Q psy107 108 LNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRK 187 (209)
Q Consensus 108 l~~~~~~~~~~d~~~~g~i~~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~ 187 (209)
+..+..+...++.+.+++++.++|..++..+..+ + |.++++.+.. +++.++...|........+.+..++...
T Consensus 508 ~~~~~~~~~~~~~~~~~k~s~~~~~~~~~~~~~~---~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (612)
T KOG0045|consen 508 LGECGDKWKLSSTLVNTKVSRSSEFILTVEVVSP---L---DIEGESTLVV-DIPIAIESKGSGDVAPLLNVIRLRIADP 580 (612)
T ss_pred hhhhchhhhccccccccccchhhceeeeeccccc---E---EEeccccccc-cccceeeccCCcccccceeeeeeeccCh
Confidence 3455666777788889999999998888877655 2 8888999999 9999988887766655555555555444
Q ss_pred CceEeHHHHHHHHHH
Q psy107 188 DGTLRFGDFVSSVLH 202 (209)
Q Consensus 188 ~g~i~~~eF~~~~~~ 202 (209)
+..++++.+..+..+
T Consensus 581 ~~~~~~~~~~~~~~~ 595 (612)
T KOG0045|consen 581 EIAYSFDSTSCCATE 595 (612)
T ss_pred hheeecccccccccc
Confidence 555555555544433
No 137
>KOG1955|consensus
Probab=57.99 E-value=17 Score=32.46 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=44.4
Q ss_pred cccccCCCcceeHHHHHHHHH----cHHHHHhhccccccCCCccccHHHHHHHHHH-----cCCCCCHHHHH
Q psy107 116 RCMETSGTGRLKFSDFKDLMC----SLKYWQTAFKNHTKEKTGILRAERLRDALLE-----VGYQLNTEVLS 178 (209)
Q Consensus 116 ~~~d~~~~g~i~~~eF~~l~~----~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~-----~G~~~~~~~~~ 178 (209)
..+..|-.|-|.=.--++.+. -+.++.++++..|.|++|-++..|+..++-- -|+.+++..-.
T Consensus 238 rtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLPe~LP~ 309 (737)
T KOG1955|consen 238 RTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLPESLPH 309 (737)
T ss_pred hcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCCCCCcc
Confidence 444556666665444444444 3568999999999999999999999998854 37777654433
No 138
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=57.85 E-value=24 Score=22.17 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=24.6
Q ss_pred cccccCCCccccHHHHHHHHHHc----------CCCCCHHHHHHHHHH
Q psy107 146 KNHTKEKTGILRAERLRDALLEV----------GYQLNTEVLSVLTLR 183 (209)
Q Consensus 146 ~~~D~d~~G~I~~~eL~~~l~~~----------G~~~~~~~~~~l~~~ 183 (209)
+.+|...+.+|+.+++++...+- |..++...+-.++.+
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 35777777788888887776542 555666555555544
No 139
>PLN02222 phosphoinositide phospholipase C 2
Probab=57.25 E-value=28 Score=31.86 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcC-C-CCCHHHHHHHHHHhhC--CCceEeHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVG-Y-QLNTEVLSVLTLRYMR--KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G-~-~~~~~~~~~l~~~~~~--~~g~i~~~eF~~~~~~ 202 (209)
++..+|..+-. ++.++.++|+..|.... . ..+.+.++.|+.++.. ..+.|+++.|..++..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45566666542 46899999999998863 3 3567788888888754 5667999999999864
No 140
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=56.93 E-value=27 Score=24.60 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=34.8
Q ss_pred hhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 143 TAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 143 ~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
.+|-..-.-++..+|.+++..+|.+.|..+.+..+..++..+..
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G 50 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG 50 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC
Confidence 34444445566679999999999999999999988888887753
No 141
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=56.50 E-value=27 Score=21.86 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHcCCCC----CHHHHHHHHHHhhC--CCceEeHHHHHHHHHHHHH
Q psy107 157 RAERLRDALLEVGYQL----NTEVLSVLTLRYMR--KDGTLRFGDFVSSVLHLSI 205 (209)
Q Consensus 157 ~~~eL~~~l~~~G~~~----~~~~~~~l~~~~~~--~~g~i~~~eF~~~~~~l~~ 205 (209)
+.-++.+.|++.|.-+ ...+++.|..+++. ..|-|+=++|+++..-|++
T Consensus 3 tlyDVqQLLK~fG~~IY~gdr~~DielM~~El~~Ly~~~lidk~~y~~A~liL~~ 57 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYVGDRLWDIELMEIELKELYKSGLIDKKEYLTAKLILRR 57 (62)
T ss_dssp SHHHHHHHHHTTS-----S-HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4568899999998522 23566667677776 7889999999999877764
No 142
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=56.25 E-value=16 Score=23.39 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
.++...|-.+|.. .++......+...|+. ..+.|+-++|++.+..
T Consensus 8 ~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 8 WMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred cccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3444444444443 3666667777777766 6777777777776644
No 143
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=53.60 E-value=12 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=6.7
Q ss_pred CcceeHHHHHHHH
Q psy107 123 TGRLKFSDFKDLM 135 (209)
Q Consensus 123 ~g~i~~~eF~~l~ 135 (209)
.|++.-+||..+.
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 4555555555443
No 144
>PRK01844 hypothetical protein; Provisional
Probab=52.82 E-value=32 Score=22.16 Aligned_cols=32 Identities=6% Similarity=0.154 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 154 GILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 154 G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
=.|+.+-+|..+.++|...|+..++.+.+...
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 36899999999999999999999999887653
No 145
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=52.06 E-value=33 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=31.1
Q ss_pred ccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCC
Q psy107 149 TKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRK 187 (209)
Q Consensus 149 D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~ 187 (209)
-.|.+|+++.++|-+.+...+..++.+++++++..-+.+
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~ 65 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKG 65 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCc
Confidence 457889999999999888767778999999988765543
No 146
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=51.77 E-value=37 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=33.7
Q ss_pred hccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 144 ~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
+|-..-.-++..+|.+++..+|++.|..+.+..+..+++.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 444444556668999999999999999999888888887764
No 147
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=51.54 E-value=31 Score=20.48 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=19.4
Q ss_pred CCeEEEEEEeeCCeEEEEEecCC
Q psy107 15 FPGVFRFRLWWCGEWVEVLVDDR 37 (209)
Q Consensus 15 ~~G~y~~~~~~~g~~~~v~iDd~ 37 (209)
.=..+.|+|.+.|.|..|.|+..
T Consensus 6 ~w~~l~F~~~~rg~~l~v~i~~~ 28 (54)
T PF03633_consen 6 QWSSLSFRLRYRGHWLEVEITHE 28 (54)
T ss_dssp T-SEEEEEEEETTEEEEEEEETT
T ss_pred ccCEeEEEEEECCEEEEEEEECC
Confidence 34569999999999999999875
No 148
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=51.41 E-value=42 Score=22.69 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhh---C---CCceEeHHHHHHHHHHHHH
Q psy107 158 AERLRDALLEVGYQLNTEVLSVLTLRYM---R---KDGTLRFGDFVSSVLHLSI 205 (209)
Q Consensus 158 ~~eL~~~l~~~G~~~~~~~~~~l~~~~~---~---~~g~i~~~eF~~~~~~l~~ 205 (209)
...|+.+|+..|..++.+++...+..++ + .+|.|+.+.+-+.=..+..
T Consensus 11 v~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~l~~ 64 (90)
T PF02337_consen 11 VSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEELKR 64 (90)
T ss_dssp HHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 4567888888899999888888776654 3 5788998888777666554
No 149
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.56 E-value=36 Score=21.78 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=28.8
Q ss_pred CccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 153 TGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 153 ~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
+=.|+.+-+|..+.++|...|+..++++.+.+.
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 346999999999999999999999999887653
No 150
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=49.78 E-value=29 Score=18.62 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHcCCCCCH
Q psy107 155 ILRAERLRDALLEVGYQLNT 174 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~ 174 (209)
.++..+|++.++..|.+.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G 22 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSG 22 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCC
Confidence 56789999999999987653
No 151
>KOG0998|consensus
Probab=48.23 E-value=6.4 Score=37.62 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=51.0
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
..+.++|...|.+.+|.|+..+.+..+...| ++...+.......+. +.+.+++++|.-.+..+
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 3567799999999999999999999999855 566677776666666 88999999887776544
No 152
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=47.52 E-value=23 Score=19.17 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=15.5
Q ss_pred cccHHHHHHHHHHcCCCCCH
Q psy107 155 ILRAERLRDALLEVGYQLNT 174 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~ 174 (209)
.++..||++.+++.|.+.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G 22 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSG 22 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STS
T ss_pred cCcHHHHHHHHHHCCCCCCC
Confidence 46788999999999987653
No 153
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=47.34 E-value=4.9 Score=28.36 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=27.9
Q ss_pred ceeHHHHHHHHHcHH----HHHhhccccccCCCccccHHHHHHHHHHcCCCC
Q psy107 125 RLKFSDFKDLMCSLK----YWQTAFKNHTKEKTGILRAERLRDALLEVGYQL 172 (209)
Q Consensus 125 ~i~~~eF~~l~~~~~----~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~ 172 (209)
.|+-++|..-|+.+. +.+++|... +..+.++...++.+|..+|+.+
T Consensus 6 ~l~~~~Ff~RWkql~~~~~E~Q~vf~~~--~~~~~~~~~~~~~~l~g~~~~v 55 (113)
T PF02296_consen 6 TLSSEDFFQRWKQLGGPPQEAQEVFKLK--DAKRPMDLESIRRKLEGFGFAV 55 (113)
T ss_dssp ---HHHHHHHHTTT-SGGGEEEEEEE------SS---HHHHHHHHHHHTSEE
T ss_pred cCCHHHHHHHHHhccCCccccEEEEccc--ccCCcccHHHHHHHHhcCCeEe
Confidence 467889999999874 344556644 4667899999999999998754
No 154
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=47.06 E-value=40 Score=22.75 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=3.0
Q ss_pred cceeHHH
Q psy107 124 GRLKFSD 130 (209)
Q Consensus 124 g~i~~~e 130 (209)
|.++-.|
T Consensus 14 G~v~~~E 20 (104)
T cd07313 14 GEYDEEE 20 (104)
T ss_pred CCCCHHH
Confidence 4444443
No 155
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=46.38 E-value=23 Score=25.16 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 172 LNTEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 172 ~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
+++++.+.+-.++.- ..|.+.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 688999999888876 789999999998875
No 156
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=45.51 E-value=41 Score=21.71 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCceEeHHHHHHHHHHH
Q psy107 176 VLSVLTLRYMRKDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 176 ~~~~l~~~~~~~~g~i~~~eF~~~~~~l 203 (209)
+++.++..+..+.+.|+.++|.+++...
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~e 28 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREE 28 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 4566777776567788888888887653
No 157
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.86 E-value=32 Score=26.38 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=45.7
Q ss_pred HHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh---C-CCceEeHHHHH
Q psy107 133 DLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM---R-KDGTLRFGDFV 197 (209)
Q Consensus 133 ~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~---~-~~g~i~~~eF~ 197 (209)
.+..+-..++++|.-||.+.=-..+..++.+++..-|+-=+..-+++++.... . ... +|++|+
T Consensus 47 tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~yl 113 (179)
T TIGR00624 47 TVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN--DLVEFL 113 (179)
T ss_pred HHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc--cHHHHH
Confidence 34455567899999999998888899999999988887556666666665332 1 222 788887
No 158
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=43.68 E-value=61 Score=18.73 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q psy107 157 RAERLRDALLEVGYQLNTEVL 177 (209)
Q Consensus 157 ~~~eL~~~l~~~G~~~~~~~~ 177 (209)
+.+++..+.+..|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 678888888899999997765
No 159
>PF13954 PapC_N: PapC N-terminal domain; PDB: 2VQI_B 3FIP_A 3RFZ_E 3OHN_A 1ZDV_A 1ZE3_D 3BWU_D 1ZDX_A.
Probab=43.61 E-value=29 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=16.2
Q ss_pred CCCCeEEEEEEeeCCeEEE
Q psy107 13 PSFPGVFRFRLWWCGEWVE 31 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~ 31 (209)
.-.-|.|.|.+++||+|..
T Consensus 26 ~~~pG~Y~vdv~vN~~~~~ 44 (146)
T PF13954_consen 26 AIPPGEYSVDVYVNGKFIG 44 (146)
T ss_dssp SS-SEEEEEEEEETTEEEE
T ss_pred CCCCeEEEEEEEECCeeee
Confidence 4567999999999999987
No 160
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=43.38 E-value=46 Score=23.46 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=27.7
Q ss_pred HhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 142 QTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 142 ~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
...+..+. .....++.+||..+|. +|..-++.+++++.
T Consensus 7 ~~L~~~~~-~~~~~vtl~elA~~l~-----cS~Rn~r~lLkkm~ 44 (115)
T PF12793_consen 7 QRLWQHYG-GQPVEVTLDELAELLF-----CSRRNARTLLKKMQ 44 (115)
T ss_pred HHHHHHcC-CCCcceeHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence 34444444 5566799999999985 78888888888775
No 161
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=42.51 E-value=65 Score=20.50 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHc----CCCCCHHHHHHHHHHh
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEV----GYQLNTEVLSVLTLRY 184 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~----G~~~~~~~~~~l~~~~ 184 (209)
..+..+....+...+--+-..+|+.++..+ |...+++.++.++.++
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 344555555544444456678999999886 6677788888877553
No 162
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=42.30 E-value=41 Score=17.92 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=12.6
Q ss_pred CceEeHHHHHHHHHHHHH
Q psy107 188 DGTLRFGDFVSSVLHLSI 205 (209)
Q Consensus 188 ~g~i~~~eF~~~~~~l~~ 205 (209)
.|.|++++++.++.++..
T Consensus 2 ~~~i~~~~~~d~a~rv~~ 19 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNN 19 (33)
T ss_pred CceecHHHHHHHHHHHHH
Confidence 467777777777777654
No 163
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=41.20 E-value=86 Score=19.33 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=33.8
Q ss_pred ccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHHHHHHHh
Q psy107 154 GILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIA 206 (209)
Q Consensus 154 G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~l~~~ 206 (209)
-.+|.+||...+..++..++.+++-.+...+-. +.-..|..+...|...
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~----~er~k~~~M~~~L~~y 56 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVHG----IERDKFVDMQENLKEY 56 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----HHHHhHHHHHHHHHHH
Confidence 357899999999999988888888887766542 2223455555555443
No 164
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=40.88 E-value=48 Score=20.78 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=30.1
Q ss_pred CCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
.++.++..+|.+.|...|+.++++.+...+..++.
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~ 44 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMER 44 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 45679999999999999999999999988877764
No 165
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=40.45 E-value=93 Score=21.71 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=47.2
Q ss_pred cccccCCCcceeHHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHc---CC-CCCHHHHHHHHHHhhC
Q psy107 116 RCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEV---GY-QLNTEVLSVLTLRYMR 186 (209)
Q Consensus 116 ~~~d~~~~g~i~~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~---G~-~~~~~~~~~l~~~~~~ 186 (209)
.+.|+..+-.|++++...+...- .-|++.|....--|+..=|-+++-+. |. -+|...+..+++.++.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g----~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREG----REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCC----CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCh
Confidence 46678888889998887765533 45888886544467777777766543 43 3688889999888775
No 166
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=39.97 E-value=46 Score=21.64 Aligned_cols=24 Identities=29% Similarity=0.215 Sum_probs=20.1
Q ss_pred CCCeEEEEE-EeeCCeEEEEEecCC
Q psy107 14 SFPGVFRFR-LWWCGEWVEVLVDDR 37 (209)
Q Consensus 14 ~~~G~y~~~-~~~~g~~~~v~iDd~ 37 (209)
...|.|.|+ ...+|+...|.||-.
T Consensus 51 ~~~g~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 51 DDDGCYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred cCCCEEEEEEEECCCCEEEEEEcCC
Confidence 367889999 778999999999854
No 167
>PLN02230 phosphoinositide phospholipase C 4
Probab=39.73 E-value=66 Score=29.61 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcC-C--CCCHHHHHHHHHHhhC--------CCceEeHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVG-Y--QLNTEVLSVLTLRYMR--------KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G-~--~~~~~~~~~l~~~~~~--------~~g~i~~~eF~~~~~~ 202 (209)
++..+|..+-.++ +.++.++|+..|.+.. . ..+.+..+.++.++.. +.+.|+++.|..++..
T Consensus 30 ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 30 DVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 5667777774343 7999999999998864 2 3466777777765532 2346999999998865
No 168
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=39.52 E-value=92 Score=19.22 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=30.5
Q ss_pred HHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHH
Q psy107 128 FSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVL 180 (209)
Q Consensus 128 ~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l 180 (209)
+..|......-..++.-++.. .+.+++..+.++.|+.++.+++...
T Consensus 4 l~~Fl~~~~~d~~L~~~l~~~-------~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 4 LKAFLEKVKTDPDLREKLKAA-------EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHHc-------CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345555544444444444432 2588889999999999999988764
No 169
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=39.03 E-value=1.3e+02 Score=22.06 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-C-C----ceEeHHHHHHHHHHHH
Q psy107 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYMR-K-D----GTLRFGDFVSSVLHLS 204 (209)
Q Consensus 156 I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~-~----g~i~~~eF~~~~~~l~ 204 (209)
.+..+++.+...+++++|+++++.++.+++. + + -.|+.+--..++..++
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~~r 81 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIREVR 81 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHHHH
Confidence 4567788877777788899999998888876 2 2 2466655555555544
No 170
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=38.25 E-value=34 Score=26.37 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy107 134 LMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLT 181 (209)
Q Consensus 134 l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~ 181 (209)
+.++-+.++++|..||.++=-..+.+++..+|...|+-=....++..+
T Consensus 50 VL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 50 VLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 344556789999999999988899999999999988633444444443
No 171
>KOG4347|consensus
Probab=37.72 E-value=31 Score=31.77 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHhhccccccCCCccccHHHHHHHHHHc
Q psy107 141 WQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 141 ~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
...+|..+|.+.+|.|+..++-..|..+
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 4678999999999999999999888876
No 172
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=37.61 E-value=74 Score=20.34 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 156 I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
-+-.||...|...|+.+|...+..-++++.
T Consensus 20 ~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 20 SSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp -SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 367899999999999999998888877764
No 173
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=36.96 E-value=34 Score=26.48 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=44.3
Q ss_pred HHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh---C-CCceEeHHHHH
Q psy107 133 DLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM---R-KDGTLRFGDFV 197 (209)
Q Consensus 133 ~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~---~-~~g~i~~~eF~ 197 (209)
.+..+-..++++|..||.+.=-..+.+++.++|..-|+-=+..-+++++.... . ....-+|++|+
T Consensus 48 tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~yl 116 (187)
T PRK10353 48 TVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFV 116 (187)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34455568899999999988777889999999988876445556666665322 1 11123677776
No 174
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.53 E-value=75 Score=23.46 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=26.0
Q ss_pred CccccHHHHHHHHHHc--CCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHH
Q psy107 153 TGILRAERLRDALLEV--GYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVL 201 (209)
Q Consensus 153 ~G~I~~~eL~~~l~~~--G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~ 201 (209)
+|.++..|......-+ .+.++.+++.+++..... +...++|-.|-..+.
T Consensus 42 DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 42 DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455555532221111 345666777777666555 555666666655544
No 175
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=36.20 E-value=1.3e+02 Score=20.01 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy107 156 LRAERLRDALLEVGYQLNTEVLSVLTLRY 184 (209)
Q Consensus 156 I~~~eL~~~l~~~G~~~~~~~~~~l~~~~ 184 (209)
|+..+++.+..-....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677888777778888888888877664
No 176
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=36.05 E-value=89 Score=22.07 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 151 EKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 151 d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
-++-.+|.++++.+|.+.|..+....+..++..+.
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 44556999999999999999998888888877764
No 177
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=35.65 E-value=54 Score=21.21 Aligned_cols=23 Identities=35% Similarity=0.772 Sum_probs=16.2
Q ss_pred CCeEEEEEEeeCCeEEEEEecCCcc
Q psy107 15 FPGVFRFRLWWCGEWVEVLVDDRLP 39 (209)
Q Consensus 15 ~~G~y~~~~~~~g~~~~v~iDd~~p 39 (209)
+.|.|..||.++|.|. ..|-.-|
T Consensus 45 ~~G~y~Ykf~vdg~~~--~~DP~~~ 67 (82)
T cd02861 45 RPGRYEYKFVVDGEWV--IVDPNAA 67 (82)
T ss_pred CCCcEEEEEEECCEEe--eCCCCCC
Confidence 4577889999999885 4455444
No 178
>KOG0506|consensus
Probab=35.32 E-value=61 Score=28.95 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=44.3
Q ss_pred hccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC--------CC-ceEeHHHHHHHHH
Q psy107 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR--------KD-GTLRFGDFVSSVL 201 (209)
Q Consensus 144 ~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~--------~~-g~i~~~eF~~~~~ 201 (209)
+|..+-...++.++...|-.+|++.|..-++.-+..++.++.+ .. +.++-+-|.+++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4776766667999999999999999999888777777766532 22 3478888887753
No 179
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=35.30 E-value=73 Score=22.33 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy107 157 RAERLRDALLEVGYQLNTEVLSVLTLRY 184 (209)
Q Consensus 157 ~~~eL~~~l~~~G~~~~~~~~~~l~~~~ 184 (209)
+.+|+|.++.+....+++++++.|+..+
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 5778888888887778888888876544
No 180
>KOG1029|consensus
Probab=34.73 E-value=1.1e+02 Score=29.10 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=40.6
Q ss_pred CCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHH
Q psy107 151 EKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 151 d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~ 204 (209)
-+.|+|+...-|+.+-..|. +...+-.|..-.|. +||+|+..||.-.|.-+.
T Consensus 27 p~~gfitg~qArnfflqS~L--P~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~ 79 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQSGL--PTPVLAQIWALSDLDKDGRMDIREFSIAMKLIK 79 (1118)
T ss_pred CCCCccchHhhhhhHHhcCC--ChHHHHHHHHhhhcCccccchHHHHHHHHHHHH
Confidence 55799999999999998874 55666666655555 899999999987775443
No 181
>COG3549 HigB Plasmid maintenance system killer protein [General function prediction only]
Probab=33.54 E-value=44 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCeEEEEEEeeCCeEEE
Q psy107 5 STCGSSGPPSFPGVFRFRLWWCGEWVE 31 (209)
Q Consensus 5 ~~~~~~~~~~~~G~y~~~~~~~g~~~~ 31 (209)
...+.....+..|.|.+|+. ++||-
T Consensus 51 sn~~E~L~gd~~g~ySIrvN--~QwrL 75 (94)
T COG3549 51 SNHFEKLGGDLKGLYSIRVN--QQWRL 75 (94)
T ss_pred hhhHHHcCCCccCcEEEEEC--CEEEE
Confidence 33444556778888887754 55543
No 182
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.31 E-value=74 Score=27.30 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=26.4
Q ss_pred ccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHHHHh
Q psy107 154 GILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHLSIA 206 (209)
Q Consensus 154 G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l~~~ 206 (209)
..++.+||+..|. .+..--+...++|.+.-+. =--++.|.||++.|..|+.+
T Consensus 6 ~~~~LeeLe~kLa-~~d~~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~ 58 (379)
T PF11593_consen 6 PNLKLEELEEKLA-SNDNSKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEM 58 (379)
T ss_pred CCCcHHHHHHHHh-cCCchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 4567777777776 3333111111111111111 23456788888888777544
No 183
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=33.28 E-value=64 Score=25.76 Aligned_cols=47 Identities=11% Similarity=0.194 Sum_probs=36.0
Q ss_pred cHHHHHHHH----HHcCCCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHHH
Q psy107 157 RAERLRDAL----LEVGYQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 157 ~~~eL~~~l----~~~G~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~l 203 (209)
+.++++.+. ...|..+++++++.|+.-+.. .+-.+++.+|..-+..|
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~l 224 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNNL 224 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 666766555 456999999999999888776 67778888888776554
No 184
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.14 E-value=91 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy107 157 RAERLRDALLEVGYQLNTEVLSVLTLRY 184 (209)
Q Consensus 157 ~~~eL~~~l~~~G~~~~~~~~~~l~~~~ 184 (209)
+..|||.+|..-+..++++++++++.-.
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 6789999999999999999999887544
No 185
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=32.91 E-value=83 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.7
Q ss_pred ccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 149 TKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 149 D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
-.|+.|+.+.++|...++..|..++.+.+..++..-+.
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 35788999999999999999999999999998876543
No 186
>PLN02228 Phosphoinositide phospholipase C
Probab=32.88 E-value=1.2e+02 Score=27.74 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=41.7
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhhC-----CCceEeHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEV-GY-QLNTEVLSVLTLRYMR-----KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~-~~~~~~~~~l~~~~~~-----~~g~i~~~eF~~~~~~ 202 (209)
++..+|..+-. ++.++.++|...|... |. ..+.+.++.++.++.. ..+.++++.|..++..
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34445544432 3579999998888876 32 2456677888888754 2467999999999865
No 187
>PLN02952 phosphoinositide phospholipase C
Probab=31.44 E-value=1.3e+02 Score=27.88 Aligned_cols=53 Identities=4% Similarity=-0.029 Sum_probs=39.2
Q ss_pred CCccccHHHHHHHHHHcCC--CCCHHHHHHHHHHhhCCCceEeHHHHHHHHHHHH
Q psy107 152 KTGILRAERLRDALLEVGY--QLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~--~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~l~ 204 (209)
+.|.++..+++...+.+-. ..+..++..++.++..+.+.|+.++|.+++...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhC
Confidence 4688888888765554421 2367889999988877667899999999987644
No 188
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=31.21 E-value=59 Score=29.29 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=42.9
Q ss_pred HHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 129 SDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 129 ~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
+-|..+|..+ ....-...+.-+.|.++..|..+.|.++++.-..-+++++++++..
T Consensus 447 ~aF~~l~~RI--~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~ 502 (548)
T PF02459_consen 447 NAFSQLMRRI--SRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAAL 502 (548)
T ss_pred cHHHHHHHHH--HHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhc
Confidence 3567777765 3444556777888899999999999999988777788888887653
No 189
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=31.12 E-value=86 Score=22.12 Aligned_cols=24 Identities=29% Similarity=0.145 Sum_probs=20.9
Q ss_pred CCCCeEEEEEEeeCCeEEEEEecC
Q psy107 13 PSFPGVFRFRLWWCGEWVEVLVDD 36 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~v~iDd 36 (209)
.+..|-|.+..-+||+.....||-
T Consensus 6 ~~~~g~~~v~~~InG~~~~flVDT 29 (121)
T TIGR02281 6 KDGDGHFYATGRVNGRNVRFLVDT 29 (121)
T ss_pred EcCCCeEEEEEEECCEEEEEEEEC
Confidence 457899999999999999888884
No 190
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=30.87 E-value=94 Score=18.41 Aligned_cols=24 Identities=25% Similarity=0.084 Sum_probs=19.8
Q ss_pred CCCeEEEEEEee----CCeEEEEEecCC
Q psy107 14 SFPGVFRFRLWW----CGEWVEVLVDDR 37 (209)
Q Consensus 14 ~~~G~y~~~~~~----~g~~~~v~iDd~ 37 (209)
+....|.|++.. +|....|.||-+
T Consensus 29 ~~~~~Y~v~~~~~~~~~~~~~~v~VDa~ 56 (64)
T PF03413_consen 29 NGRLVYEVEVVSDDDPDGGEYEVYVDAY 56 (64)
T ss_dssp TCEEEEEEEEEBTTSTTTEEEEEEEETT
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEECC
Confidence 778899999985 888888888854
No 191
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=30.62 E-value=39 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.2
Q ss_pred hhccccccCCCccccHHHHHHHHHHc
Q psy107 143 TAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 143 ~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
-....||.+++|.|+.-.++.+|..+
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 34677899999999999999887643
No 192
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=30.24 E-value=1.2e+02 Score=21.24 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHH
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVS 198 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~ 198 (209)
.|+.+.|+.+|...|..+.+.-++.++..... .+.+|-+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg----~~idE~i~ 55 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG----VDIDEVIK 55 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC----CCHHHHHH
Confidence 79999999999999999999999998887753 24555443
No 193
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=30.00 E-value=35 Score=26.22 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHcHHHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy107 133 DLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRY 184 (209)
Q Consensus 133 ~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~ 184 (209)
.+..+...++++|.-||.+.=-..+.+++..++..-|.--+..-++.++...
T Consensus 43 ~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 43 TILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNA 94 (179)
T ss_dssp HHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 3445556889999999998877888899999988888766667777776543
No 194
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.71 E-value=77 Score=23.05 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHHH
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVL 201 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~ 201 (209)
.+++-||.. ...++..++.+.++++|..++.++++.-+.++.+=-=++|++.+.
T Consensus 91 kKLRiAf~l---------K~~Dm~~I~~~~~f~vS~pElsAlfR~~~hkN~r~CGDq~lR~FL 144 (155)
T COG4807 91 KKLRIAFSL---------KTDDMLAILTEQQFRVSMPELSALFRAPDHKNFRECGDQFLRYFL 144 (155)
T ss_pred HhHhHhhhc---------ccchHHHHHhccCcccccHHHHHHHhCCCccchhhhHHHHHHHHH
Confidence 356667764 346788899999999999999999877654433332355555543
No 195
>PLN02223 phosphoinositide phospholipase C
Probab=29.38 E-value=1.5e+02 Score=26.89 Aligned_cols=62 Identities=10% Similarity=-0.045 Sum_probs=43.6
Q ss_pred HHHhhccccccCCCccccHHHHHHHH---HHc-C-CCCCHHHHHHHHHHhhC---------CCceEeHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDAL---LEV-G-YQLNTEVLSVLTLRYMR---------KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l---~~~-G-~~~~~~~~~~l~~~~~~---------~~g~i~~~eF~~~~~~ 202 (209)
.++.+|..+- ++.|.++.+.|+..| .+. | ...+.++.+.++.++.. ....++++.|..++..
T Consensus 17 ~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 17 LILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4567777773 567889999999888 443 3 24566777777776543 1356999999999864
No 196
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=28.98 E-value=1.5e+02 Score=20.63 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
.||.+++..+|...|..+.+..+..++..+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999999999988888887764
No 197
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=28.83 E-value=1.3e+02 Score=19.62 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHhhC--CCceEeHHHHHHHH
Q psy107 157 RAERLRDALLEVGYQLNTEVLSVLTLRYMR--KDGTLRFGDFVSSV 200 (209)
Q Consensus 157 ~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~--~~g~i~~~eF~~~~ 200 (209)
...+|.++| .|.+.+.+.+...+..++. --+.++-+||++++
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 366777766 4666777777777776643 23467777777653
No 198
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=28.79 E-value=59 Score=24.16 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.7
Q ss_pred CCCCeEEEEEEeeCCeEEE
Q psy107 13 PSFPGVFRFRLWWCGEWVE 31 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~ 31 (209)
+...|.--+|+|.||+|-+
T Consensus 88 fEDIdvLDLRVCYNGEWy~ 106 (155)
T PF10777_consen 88 FEDIDVLDLRVCYNGEWYN 106 (155)
T ss_pred ecccCeeEEeEEEcceeee
Confidence 5677889999999999987
No 199
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=28.29 E-value=44 Score=18.28 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=12.2
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy107 155 ILRAERLRDALLEVGYQLN 173 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~ 173 (209)
+++..+||.+|.+.|..++
T Consensus 3 sltV~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFP 21 (35)
T ss_dssp T--SHHHHHHHHHHT---S
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4678899999999997664
No 200
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=28.02 E-value=47 Score=22.03 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCCCeEEEEEEeeCCeEEEEEecCCccccCCcEEEE
Q psy107 13 PSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFL 48 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~v~iDd~~p~~~~~~~~~ 48 (209)
....|.|.|+||-.+.--.|..++..|+..+...|+
T Consensus 31 ~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~~~~f~ 66 (87)
T cd05835 31 PPVVGMRWVTWFGSGTFSEVSVDKLSPFSEFFKAFS 66 (87)
T ss_pred cCCCCeEEEEEeCCCCEeEECHHHCcChhHhHHHHh
Confidence 456799999999888888889999999887665554
No 201
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=27.98 E-value=54 Score=27.35 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=33.0
Q ss_pred EEEecCCcccc--CCcEEEEecCCCCccchHHHHHHHHHh----cCC-ccccccCchHHhHHhhhCCceE
Q psy107 31 EVLVDDRLPTV--NGKLAFLQSVHSDQFWPGLLEKAYAKL----HGS-YEALKYGTMLDGLADLTGGITE 93 (209)
Q Consensus 31 ~v~iDd~~p~~--~~~~~~~~~~~~~~~W~~lleKafak~----~G~-y~~i~~~~~~~~l~~ltG~~~~ 93 (209)
.|.||...|+. +|.|... ...++.+|=.||-|+- .|. |+..+. ....|.|+++.
T Consensus 130 PvvVDEm~~~Ar~SG~p~i~----RkSiFHALN~KAVarr~A~e~gk~yee~n~-----vVaHmGggiSV 190 (358)
T COG3426 130 PVVVDEMEDVARFSGIPEIE----RKSIFHALNQKAVARRAAKEVGKRYEEMNI-----VVAHMGGGISV 190 (358)
T ss_pred ceehhhcchhhhhcCCccch----hHHHHHHhhHHHHHHHHHHHhccchhhheE-----EEEeccCceEE
Confidence 46699999984 4887655 4466777777776663 343 444322 34456666643
No 202
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.66 E-value=79 Score=19.84 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=16.9
Q ss_pred HHHHHHHhhC--CCceEeHHHHHHHHHHH
Q psy107 177 LSVLTLRYMR--KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 177 ~~~l~~~~~~--~~g~i~~~eF~~~~~~l 203 (209)
++..+...+. ..|.|+++.|++....|
T Consensus 24 ieDtiy~L~~al~~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 24 IEDTIYYLDRALQRGSIDLDTFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3333333333 57889999999887665
No 203
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=27.44 E-value=78 Score=23.73 Aligned_cols=21 Identities=43% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEeeCCeEEEEEecCCccc
Q psy107 20 RFRLWWCGEWVEVLVDDRLPT 40 (209)
Q Consensus 20 ~~~~~~~g~~~~v~iDd~~p~ 40 (209)
.++|.+||+.+.|.+|...|.
T Consensus 3 ~i~ltvNG~~~~~~~~p~~~L 23 (156)
T COG2080 3 PITLTVNGEPVELDVDPRTPL 23 (156)
T ss_pred cEEEEECCeEEEEEeCCCChH
Confidence 478999999999999988874
No 204
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=27.44 E-value=79 Score=20.74 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Q psy107 159 ERLRDALLEVGYQLNTEVLSVLTL 182 (209)
Q Consensus 159 ~eL~~~l~~~G~~~~~~~~~~l~~ 182 (209)
-|+-.||+.+|..+++++..-+..
T Consensus 20 vEIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 20 VEILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 477889999999999888766554
No 205
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=27.34 E-value=1.2e+02 Score=20.91 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=25.2
Q ss_pred CCCccccHH----HHHHHHHHcCCCCCHHHHHHHHHHh
Q psy107 151 EKTGILRAE----RLRDALLEVGYQLNTEVLSVLTLRY 184 (209)
Q Consensus 151 d~~G~I~~~----eL~~~l~~~G~~~~~~~~~~l~~~~ 184 (209)
.++|.--.. .+.+.|...|+++|+++++.+++..
T Consensus 63 ~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 63 GGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 336654444 5667788889999999999988653
No 206
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=27.22 E-value=35 Score=22.32 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHH
Q psy107 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGD 195 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~e 195 (209)
.+|+=+..++-..|..+|-.+-+..++-+++.+..+.|.+.|++
T Consensus 37 dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR~tgF~E~~d 80 (88)
T PF15144_consen 37 DSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTRSTGFMEFED 80 (88)
T ss_pred ccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhcccCceecCC
Confidence 34555566777777777766666777777777766777776653
No 207
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=27.01 E-value=1.9e+02 Score=19.15 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVLTLRY 184 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~ 184 (209)
.|+..+++.+..-+-..+++++++.+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 377888888888888889998888877664
No 208
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=26.97 E-value=1.8e+02 Score=20.17 Aligned_cols=39 Identities=13% Similarity=0.306 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHH
Q psy107 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVS 198 (209)
Q Consensus 156 I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~ 198 (209)
||.+++..+|.+.|..+++..+..+++.+.. .+.++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG----k~V~eli~ 55 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG----KNIDEVIS 55 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC----CCHHHHHH
Confidence 9999999999999999999988888877642 34455543
No 209
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.60 E-value=1.5e+02 Score=25.50 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhC----CCceEeHHHHHHHHHHHH
Q psy107 159 ERLRDALLEVGYQLNTEVLSVLTLRYMR----KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 159 ~eL~~~l~~~G~~~~~~~~~~l~~~~~~----~~g~i~~~eF~~~~~~l~ 204 (209)
.-++..|.++|+.++++++..+..++.. ....++-+|+..++.++.
T Consensus 323 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~~ 372 (378)
T PRK11858 323 HALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDVR 372 (378)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4577888899999999999998887654 335799999999887754
No 210
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=26.37 E-value=2.4e+02 Score=23.36 Aligned_cols=91 Identities=12% Similarity=0.177 Sum_probs=41.9
Q ss_pred hccccccccCCCcceeHHHHHHHHHcH-HH-HHhhcc-----ccc-cCCCccccHHHHHHHHHHc--CCCCCHHHHHHHH
Q psy107 112 LDMTRCMETSGTGRLKFSDFKDLMCSL-KY-WQTAFK-----NHT-KEKTGILRAERLRDALLEV--GYQLNTEVLSVLT 181 (209)
Q Consensus 112 ~~~~~~~d~~~~g~i~~~eF~~l~~~~-~~-~~~~F~-----~~D-~d~~G~I~~~eL~~~l~~~--G~~~~~~~~~~l~ 181 (209)
.+++..++..|.-......++.++.+. .. +...|. ... ...-+.....+++..+..+ +|.-++-.++.|+
T Consensus 25 ~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~PfTiqRlc 104 (288)
T PF09184_consen 25 EDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFFESAPEESGPQNPNVEPEDYEEMKERILELLDSFDEPPFTIQRLC 104 (288)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcchhhHHHHHHHHHHHHHhcCCCChhHHHHH
Confidence 333333344444445666666665543 11 222331 111 1222345667777665553 3333445555555
Q ss_pred HHhh-CCCceEeHHHHHHHHHH
Q psy107 182 LRYM-RKDGTLRFGDFVSSVLH 202 (209)
Q Consensus 182 ~~~~-~~~g~i~~~eF~~~~~~ 202 (209)
.-+- +....=++..|++.+.+
T Consensus 105 El~~~P~~~y~~~~k~~~alek 126 (288)
T PF09184_consen 105 ELLLDPRKHYKTLDKFLRALEK 126 (288)
T ss_pred HHHhChhhccccHHHHHHHHhe
Confidence 4432 33333455666666544
No 211
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=26.13 E-value=89 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHhhccccccCCCccccHHHHHHHHHHc-CCCCCHHHHHHHHHHh
Q psy107 139 KYWQTAFKNHTKEKTGILRAERLRDALLEV-GYQLNTEVLSVLTLRY 184 (209)
Q Consensus 139 ~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~-G~~~~~~~~~~l~~~~ 184 (209)
.+|..+|+.|. .+.|+.+.+-+++.+. |..+|..+++-+..++
T Consensus 37 ~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 37 DKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 36777888886 4568999999999887 6889998888877665
No 212
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=26.04 E-value=88 Score=20.40 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
..|+||..++..+|.... ++.+.++.++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHH
Confidence 468888888888887443 677778887766543
No 213
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=25.12 E-value=1e+02 Score=19.75 Aligned_cols=22 Identities=27% Similarity=0.290 Sum_probs=18.2
Q ss_pred eEEEEEEeeCCeEEEEEecCCc
Q psy107 17 GVFRFRLWWCGEWVEVLVDDRL 38 (209)
Q Consensus 17 G~y~~~~~~~g~~~~v~iDd~~ 38 (209)
|.|.+...+||+...+.||-=-
T Consensus 1 ~~~~v~v~i~~~~~~~llDTGa 22 (96)
T cd05483 1 GHFVVPVTINGQPVRFLLDTGA 22 (96)
T ss_pred CcEEEEEEECCEEEEEEEECCC
Confidence 5788999999999999988543
No 214
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=24.42 E-value=1.4e+02 Score=21.91 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=28.3
Q ss_pred CccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 153 TGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 153 ~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
....+.+||.+.|.+.|+.+|...+...+++..
T Consensus 14 ~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 14 EKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 445689999999999999999999988887764
No 215
>PRK00441 argR arginine repressor; Provisional
Probab=24.25 E-value=1.4e+02 Score=22.16 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.9
Q ss_pred CCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
..+..+..||.+.|.+.|+.+|+..+..-+..+.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 3567799999999999999999998888777654
No 216
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=23.75 E-value=1.6e+02 Score=17.65 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHhhC--CCceEeHHHHHHHHHHH
Q psy107 172 LNTEVLSVLTLRYMR--KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 172 ~~~~~~~~l~~~~~~--~~g~i~~~eF~~~~~~l 203 (209)
+++.+-+..+..... .+|.|+.+||-.-+..+
T Consensus 3 ~sd~dR~~~~~~L~~a~a~GrL~~~Ef~~R~~~a 36 (53)
T PF08044_consen 3 ASDADRERAVDLLRAAFAEGRLSLDEFDERLDAA 36 (53)
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 344444454544444 67888888887766554
No 217
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=23.48 E-value=1.3e+02 Score=17.23 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=17.1
Q ss_pred HHHhhccccc-cCC-CccccHHHHHHHHHH
Q psy107 140 YWQTAFKNHT-KEK-TGILRAERLRDALLE 167 (209)
Q Consensus 140 ~~~~~F~~~D-~d~-~G~I~~~eL~~~l~~ 167 (209)
.+..+|..|- +++ ..+++..||++.|..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4455666553 222 357888888887764
No 218
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=23.42 E-value=1.2e+02 Score=20.49 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=25.7
Q ss_pred CCCCeEEEEEEeeCCeEEEEEecCCccccC
Q psy107 13 PSFPGVFRFRLWWCGEWVEVLVDDRLPTVN 42 (209)
Q Consensus 13 ~~~~G~y~~~~~~~g~~~~v~iDd~~p~~~ 42 (209)
....|.|+|+||-.+..--|.-++..|+..
T Consensus 37 ~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~~ 66 (93)
T cd05840 37 KKNKRTYPVMFFPDGDYYWVPNKDLKPLTE 66 (93)
T ss_pred CCCCCeEEEEEeCCCcEEEEChhhcccCCH
Confidence 457899999999988888888899999863
No 219
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=23.13 E-value=2.4e+02 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.0
Q ss_pred CCCCCCeEEEEEEeeCCeEEEEE
Q psy107 11 GPPSFPGVFRFRLWWCGEWVEVL 33 (209)
Q Consensus 11 ~~~~~~G~y~~~~~~~g~~~~v~ 33 (209)
...++.|+|.++..++|.|..-+
T Consensus 35 ~~~p~~GVYa~~v~~~~~~~~~v 57 (125)
T PF01687_consen 35 KLLPKEGVYAVWVRVDGKWYPGV 57 (125)
T ss_dssp CTCCCTEEEEEEEEETSEEEEEE
T ss_pred cccccCEEEEEEEEECCEEEEeE
Confidence 34566799999999999976644
No 220
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.83 E-value=1.7e+02 Score=23.37 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=35.2
Q ss_pred cccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 146 KNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 146 ~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
...=-|++|.+....|+.-+..+--.++.+++.++..+...
T Consensus 158 ~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~A 198 (224)
T PF13829_consen 158 DIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLRA 198 (224)
T ss_pred EEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHHH
Confidence 33445789999999999999999999999999999888754
No 221
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=22.80 E-value=1e+02 Score=20.15 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.3
Q ss_pred EEEEEeeCCeEEEEEecC
Q psy107 19 FRFRLWWCGEWVEVLVDD 36 (209)
Q Consensus 19 y~~~~~~~g~~~~v~iDd 36 (209)
+.+++.+||++..+.||.
T Consensus 1 ~~~~~~Ing~~i~~lvDT 18 (91)
T cd05484 1 KTVTLLVNGKPLKFQLDT 18 (91)
T ss_pred CEEEEEECCEEEEEEEcC
Confidence 357899999999999985
No 222
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=22.69 E-value=2.3e+02 Score=19.50 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=26.4
Q ss_pred ccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 154 GILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 154 G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
-.|+.+++..+|.+.|..+.......+.+.+.
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 36999999999999999888877777666554
No 223
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=22.41 E-value=1.3e+02 Score=18.63 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVL 180 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l 180 (209)
.|+..++..+|+...-.++.++++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46777888888777777777776654
No 224
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=22.38 E-value=3.5e+02 Score=20.90 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHc----------CCCCCHHHHHHHHHHhhC
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEV----------GYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~----------G~~~~~~~~~~l~~~~~~ 186 (209)
.++.+|..-+ .-.|+..+|-..|... |..++...+..+++.|+-
T Consensus 104 DIr~vf~~~~---~~~i~T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI 157 (184)
T PF12307_consen 104 DIREVFEAGG---EDRIPTADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGI 157 (184)
T ss_pred HHHHHHccCC---CCcccHHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCC
Confidence 4566775532 2357777777777664 456777888888877754
No 225
>PHA03291 envelope glycoprotein I; Provisional
Probab=22.37 E-value=90 Score=26.68 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=17.5
Q ss_pred CCCCCCCeEEEEEEeeCCeEE
Q psy107 10 SGPPSFPGVFRFRLWWCGEWV 30 (209)
Q Consensus 10 ~~~~~~~G~y~~~~~~~g~~~ 30 (209)
.+..+..|.|.+|++++|.-.
T Consensus 135 ~P~~~DsGiYvLRV~vdgat~ 155 (401)
T PHA03291 135 GAARAVVGLYVLRVWVEGATN 155 (401)
T ss_pred CCCcccceeEEEEEEeCCCcc
Confidence 456889999999999997654
No 226
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=22.37 E-value=1.6e+02 Score=25.15 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=16.0
Q ss_pred ccccccCCCccccHHHHHHHHHHcCC
Q psy107 145 FKNHTKEKTGILRAERLRDALLEVGY 170 (209)
Q Consensus 145 F~~~D~d~~G~I~~~eL~~~l~~~G~ 170 (209)
|.+.+.+..+..+..+.++.|.++|.
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~ 156 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGL 156 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCC
Confidence 44444444456677777777777765
No 227
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=22.32 E-value=1.2e+02 Score=21.23 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=11.5
Q ss_pred HHcCCCCCHHHHHHHHHHhhC
Q psy107 166 LEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 166 ~~~G~~~~~~~~~~l~~~~~~ 186 (209)
+..|..+++++++..+..+..
T Consensus 61 k~~gI~vsd~evd~~i~~ia~ 81 (118)
T PF09312_consen 61 KRLGIKVSDEEVDEAIANIAK 81 (118)
T ss_dssp HHCT----HHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHH
Confidence 345888888888777776654
No 228
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=22.06 E-value=52 Score=23.45 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=26.9
Q ss_pred CCcceeHHHHHHHHHcHH--------HHHhhccccccCCCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh---CCCce
Q psy107 122 GTGRLKFSDFKDLMCSLK--------YWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM---RKDGT 190 (209)
Q Consensus 122 ~~g~i~~~eF~~l~~~~~--------~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~---~~~g~ 190 (209)
.+|.++-+|-..+...+. ....+...++.-..... ++.+.+..+...++.++...++...- ..||.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPI---DLEELLRELRDSLSPEEREDLLRMLIAIAYADGE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCC---HHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTTC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC
Confidence 357777777655433321 12222233332222222 33344455555555555555554332 24565
Q ss_pred Ee
Q psy107 191 LR 192 (209)
Q Consensus 191 i~ 192 (209)
++
T Consensus 113 ~~ 114 (140)
T PF05099_consen 113 IS 114 (140)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 229
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.04 E-value=1.2e+02 Score=16.51 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHcCCCCCH
Q psy107 157 RAERLRDALLEVGYQLNT 174 (209)
Q Consensus 157 ~~~eL~~~l~~~G~~~~~ 174 (209)
+.++|+.-|.+-|+..++
T Consensus 5 s~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPK 22 (38)
T ss_pred CHHHHHHHHHHcCCCCCC
Confidence 567888888888876554
No 230
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=21.97 E-value=69 Score=21.08 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=27.3
Q ss_pred CCCeEEEEEEeeCCeEEEEEecCCccccCCcEEEE
Q psy107 14 SFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFL 48 (209)
Q Consensus 14 ~~~G~y~~~~~~~g~~~~v~iDd~~p~~~~~~~~~ 48 (209)
...+.|+|+||-.+.--.|..++..|+..+...|.
T Consensus 31 ~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~~~~~ 65 (83)
T cd05834 31 PPGKKYPVYFFGTHETAFLKPEDLFPYTENKKKFG 65 (83)
T ss_pred CCCCEEEEEEeCCCCEeEECHHHceecccchhhhc
Confidence 45799999999888877788888899876554443
No 231
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=21.92 E-value=99 Score=22.96 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHHc
Q psy107 128 FSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEV 168 (209)
Q Consensus 128 ~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~~ 168 (209)
...+...+..+..+..-....|+.+.+++|.+||+.+.=.+
T Consensus 58 l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 58 LDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 33455556666666666677888888889999999876543
No 232
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=21.88 E-value=2.9e+02 Score=21.58 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHHHH
Q psy107 158 AERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202 (209)
Q Consensus 158 ~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~ 202 (209)
.+|...+|.++|+ ++.+++..+.++...+..++.++.++...+
T Consensus 155 ~~ea~~AL~~LGy--~~~ea~~av~~~~~~~~~~~~e~lir~ALk 197 (203)
T PRK14602 155 FRDALAGLANLGY--GEEEARPVLKEVLEEEPDLDVGGALRAALK 197 (203)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 4788999999997 567777777777533345677887776554
No 233
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=21.85 E-value=1.1e+02 Score=22.14 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=41.1
Q ss_pred ceeHHHHHHHHHcHHHHHhhccccccCCCccccHHHHHHHHHH-cCCCCCHHHHHH
Q psy107 125 RLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLE-VGYQLNTEVLSV 179 (209)
Q Consensus 125 ~i~~~eF~~l~~~~~~~~~~F~~~D~d~~G~I~~~eL~~~l~~-~G~~~~~~~~~~ 179 (209)
.++..++..+....+.++.++-..|.|..|..=...|.+.|.. .|..++.+....
T Consensus 39 ~i~~~~~ie~i~~~~~~k~VIILTD~D~~Ge~Irk~l~~~l~~~~~~~id~~~~~~ 94 (127)
T COG1658 39 AINSLETIELIKKAQKYKGVIILTDPDRKGERIRKKLKEYLPGAKGAFIDREIRNK 94 (127)
T ss_pred ccchHHHHHHHHHhhccCCEEEEeCCCcchHHHHHHHHHHhcccccccccHHHhhh
Confidence 3566677777777777888999999999987777777777777 676666555444
No 234
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=21.20 E-value=2.5e+02 Score=18.41 Aligned_cols=44 Identities=5% Similarity=0.114 Sum_probs=30.9
Q ss_pred cHHHHHHHHHH----cCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHH
Q psy107 157 RAERLRDALLE----VGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSV 200 (209)
Q Consensus 157 ~~~eL~~~l~~----~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~ 200 (209)
+...+|++.+. +|.++|++..+.|+..+-.+.--.++...+.++
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~p~d~~~l~Km~ 76 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKIPNDMNHLMKMM 76 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 35566666655 489999999999998876633366777666655
No 235
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=21.00 E-value=2.6e+02 Score=19.42 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 155 ILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 155 ~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
.||.+.+..+|...|..+.+.....+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 7999999999999999999888888887774
No 236
>KOG2301|consensus
Probab=20.96 E-value=62 Score=33.39 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHhhccccccCCCccccHHHHHHHHHHcC----CCCCHHHHHHHHHHhhC-CCceEeHHHHHHHHHH
Q psy107 140 YWQTAFKNHTKEKTGILRAERLRDALLEVG----YQLNTEVLSVLTLRYMR-KDGTLRFGDFVSSVLH 202 (209)
Q Consensus 140 ~~~~~F~~~D~d~~G~I~~~eL~~~l~~~G----~~~~~~~~~~l~~~~~~-~~g~i~~~eF~~~~~~ 202 (209)
+.+.+...||.+.+|.|...++...++.+- +..+.+. +.+.-.+.. .++.|+|.+-+-++.+
T Consensus 1418 ~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1418 KFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 455666679999999999999999999873 3222222 222222222 6788888887777654
No 237
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=20.88 E-value=1.3e+02 Score=18.74 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=16.0
Q ss_pred CccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 153 TGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 153 ~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
+..++..++...|...|..++...+...+....
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~g 43 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREAG 43 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHcC
Confidence 345788888887776688888887777776643
No 238
>PHA03046 Hypothetical protein; Provisional
Probab=20.56 E-value=2.8e+02 Score=20.12 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHhhCCCceEeHHHHHHHHHHHHHhh
Q psy107 170 YQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAF 207 (209)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~l~~~~ 207 (209)
+++.+.++..++..---++..|++.+|+.-++.|+..|
T Consensus 63 f~i~eddisdILkDsFI~~d~~~iKd~vlRL~vlEK~~ 100 (142)
T PHA03046 63 FPIHEDDISDILKDSFIHKDEMDIKDFVLRLLVLEKLF 100 (142)
T ss_pred CcccHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 45556666665543333556677777777776666554
No 239
>KOG4347|consensus
Probab=20.51 E-value=86 Score=29.00 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=37.9
Q ss_pred hccccccccCCCcceeHHHHHHHHHc------HHHHHhhccccccCCCccccHHHH
Q psy107 112 LDMTRCMETSGTGRLKFSDFKDLMCS------LKYWQTAFKNHTKEKTGILRAERL 161 (209)
Q Consensus 112 ~~~~~~~d~~~~g~i~~~eF~~l~~~------~~~~~~~F~~~D~d~~G~I~~~eL 161 (209)
..+...+|.+.+|.|+|.++..-... ++.++-.|+.+|.+++ ..+.+|.
T Consensus 558 ~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 558 ERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34556778999999999999764442 2467778999999988 8877776
No 240
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.50 E-value=3e+02 Score=21.36 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhCCCceEeHHHHHHHHHH
Q psy107 158 AERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202 (209)
Q Consensus 158 ~~eL~~~l~~~G~~~~~~~~~~l~~~~~~~~g~i~~~eF~~~~~~ 202 (209)
..|...+|.++|+ ++.+++..+.++.......+.++.++...+
T Consensus 152 ~~ea~~AL~~LGy--~~~ea~~al~~i~~~~~~~~~e~lir~aLk 194 (197)
T PRK14603 152 AEDAVLALLALGF--REAQVRSVVAELLAQNPEASAQTLIRKALK 194 (197)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4789999999998 577888888777542234567777766543
No 241
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.43 E-value=2.1e+02 Score=25.66 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhC---CCceEeHHHHHHHHHHH
Q psy107 159 ERLRDALLEVGYQLNTEVLSVLTLRYMR---KDGTLRFGDFVSSVLHL 203 (209)
Q Consensus 159 ~eL~~~l~~~G~~~~~~~~~~l~~~~~~---~~g~i~~~eF~~~~~~l 203 (209)
.-++..|.++|+.++++++..++.++.. ....++-+|+..++.+.
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~ 368 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDV 368 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 4567788899999999999998888754 34468888888877654
No 242
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=20.38 E-value=73 Score=21.98 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCcceeHHHHHHHHHcHHHHH-hhccccccCCCccccHHHHHHHHHHcCC
Q psy107 122 GTGRLKFSDFKDLMCSLKYWQ-TAFKNHTKEKTGILRAERLRDALLEVGY 170 (209)
Q Consensus 122 ~~g~i~~~eF~~l~~~~~~~~-~~F~~~D~d~~G~I~~~eL~~~l~~~G~ 170 (209)
.+|.|+-++|...|..+..-. .-+. +..+ .-..+.+.+.+.|...++
T Consensus 3 ~d~~~~~~~F~~~W~sl~~~~~~e~~-~~~~-~~~~~~~~i~~~L~~~nI 50 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLPDSNQQELS-IQLN-ASVPSPDAIEEKLQANNI 50 (114)
T ss_dssp TT----HHHHHHHHHHS-GGG--EEE-EEET-T----HHHHHHHHHCTT-
T ss_pred CCCccCHHHHHHHHHhCCcccceEEE-Eecc-ccCCcHHHHHHHHHHCCE
Confidence 358899999999998764222 0111 1111 234677788888876653
No 243
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=2.4e+02 Score=17.82 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHcCC----CCCHHHHHHHHHHhhC--CCceEeHHHHHHHHHHHH
Q psy107 157 RAERLRDALLEVGY----QLNTEVLSVLTLRYMR--KDGTLRFGDFVSSVLHLS 204 (209)
Q Consensus 157 ~~~eL~~~l~~~G~----~~~~~~~~~l~~~~~~--~~g~i~~~eF~~~~~~l~ 204 (209)
+.-++.+.|++.|+ .-...+++.|-.+... ..|-++-++|+++-.-|+
T Consensus 3 tfYDVqQlLK~~G~ivyfg~r~~~iemm~~El~~ly~~~ll~Ke~yl~a~~IL~ 56 (68)
T COG4483 3 TFYDVQQLLKKFGIIVYFGKRLYDIEMMQIELSELYDSGLLDKEDYLRARLILR 56 (68)
T ss_pred cHHHHHHHHHHCCeeeecCCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 35678899999985 2234556666556555 688899999999866655
No 244
>PRK03341 arginine repressor; Provisional
Probab=20.15 E-value=1.7e+02 Score=22.13 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=28.4
Q ss_pred CCccccHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q psy107 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185 (209)
Q Consensus 152 ~~G~I~~~eL~~~l~~~G~~~~~~~~~~l~~~~~ 185 (209)
..+..+-+||...|.+.|+.+|...+..-++++.
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~ 59 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVTQATLSRDLDELG 59 (168)
T ss_pred HCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 3456788999999999999999998888777654
No 245
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=20.07 E-value=1.9e+02 Score=26.15 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhC---CCceEeHHHHHHHHH
Q psy107 159 ERLRDALLEVGYQLNTEVLSVLTLRYMR---KDGTLRFGDFVSSVL 201 (209)
Q Consensus 159 ~eL~~~l~~~G~~~~~~~~~~l~~~~~~---~~g~i~~~eF~~~~~ 201 (209)
.-++..|.++|+.++++++..++.++.. ..+.|+-+|+..++.
T Consensus 430 ~av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~ 475 (503)
T PLN03228 430 HAVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVV 475 (503)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Confidence 4567888899999999999999888754 335688888777754
No 246
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=20.07 E-value=1.8e+02 Score=21.16 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhC
Q psy107 159 ERLRDALLEVGYQLNTEVLSVLTLRYMR 186 (209)
Q Consensus 159 ~eL~~~l~~~G~~~~~~~~~~l~~~~~~ 186 (209)
..+.++|..+|. ++..+++.|..+++.
T Consensus 94 ~rV~~aL~rLgv-Ps~~dv~~L~~rId~ 120 (132)
T PF05597_consen 94 ERVARALNRLGV-PSRKDVEALSARIDQ 120 (132)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 468999999998 478899999888763
No 247
>PHA03289 envelope glycoprotein I; Provisional
Probab=20.06 E-value=1.1e+02 Score=25.76 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.7
Q ss_pred CCCCCCCeEEEEEEeeCCeE
Q psy107 10 SGPPSFPGVFRFRLWWCGEW 29 (209)
Q Consensus 10 ~~~~~~~G~y~~~~~~~g~~ 29 (209)
.|..+..|.|.+|++++|..
T Consensus 128 ~Pr~~DSGiYyLRV~Ldga~ 147 (352)
T PHA03289 128 EPRMSDTGIYYIRVSLAGRN 147 (352)
T ss_pred CCCcccCeeEEEEEEeCCCc
Confidence 57789999999999999884
Done!