RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy107
(209 letters)
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent
cytoplasmic cysteine proteinases, papain-like. Functions
in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Length = 315
Score = 143 bits (363), Expect = 4e-42
Identities = 54/103 (52%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Query: 17 GVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALK 76
G++ FR W GEWVEV++DDRLPT NG L F+ S ++ W LLEKAYAKLHGSYEAL
Sbjct: 109 GIYHFRFWKNGEWVEVVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEALV 168
Query: 77 YGTMLDGLADLTGGITESISIRQDPTSSG-RLLNKLLDMTRCM 118
G + L DLTGG TE I ++ SSG L LL
Sbjct: 169 GGNTAEALEDLTGGPTERIDLKSADASSGDNDLFALLLSFLQG 211
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family.
Calpain-like thiol protease family (peptidase family
C2). Calcium activated neutral protease (large subunit).
Length = 318
Score = 134 bits (339), Expect = 2e-38
Identities = 49/105 (46%), Positives = 67/105 (63%)
Query: 9 SSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKL 68
++ G+F FR W G+WV+V++DDRLPT NG+L F+ S ++FW LLEKAYAKL
Sbjct: 93 QEFSENYAGIFHFRFWRFGKWVDVVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKL 152
Query: 69 HGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLD 113
+G YEALK G+ + L DLTGG+ ESI +++ L L
Sbjct: 153 NGCYEALKGGSTTEALEDLTGGVAESIDLKEASKDPDNLFEDLFK 197
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 133 bits (336), Expect = 4e-38
Identities = 49/109 (44%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 15 FPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEA 74
+ G+F F+ W GEWV+V+VDDRLPT +G+L F+ S ++FW LLEKAYAKLHG YEA
Sbjct: 91 YAGIFHFQFWQYGEWVDVVVDDRLPTKDGELVFVHSAERNEFWSALLEKAYAKLHGCYEA 150
Query: 75 LKYGTMLDGLADLTGGITESISIRQDPTSS--GRLLNKLLDMTRCMETS 121
L G+ + + D TGG+ E ++Q P+ +++ K L+ M S
Sbjct: 151 LSGGSTTEAMEDFTGGVAEWYELKQAPSDLNLFKIIAKALERGSLMGCS 199
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 37.8 bits (88), Expect = 0.001
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 96 SIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMC-------SLKYWQTAFKNH 148
S+ Q+PT + +L DM ++ G G + F +F LM S + + AFK
Sbjct: 39 SLGQNPTEA-----ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVF 93
Query: 149 TKEKTGILRAERLRDALLEVGYQL-NTEVLSVLTLRYMRKDGTLRFGDFV 197
++ G + A LR + +G +L + EV ++ + DG + + +FV
Sbjct: 94 DRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>gnl|CDD|224629 COG1715, Mrr, Restriction endonuclease [Defense mechanisms].
Length = 308
Score = 31.2 bits (71), Expect = 0.28
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 148 HTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202
E + ++ L+ L +RK F + V VL
Sbjct: 125 PQASVPEGDELEDSPEERIDQAVAELRAELATELLENLRKLSPAFFEELVVDVLE 179
>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein
AtoC; Provisional.
Length = 457
Score = 30.6 bits (69), Expect = 0.56
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 32 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYG 78
VL+D R+P ++G A + + P +L AYA++ + EAL+ G
Sbjct: 52 VLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCG 98
>gnl|CDD|130973 TIGR01918, various_sel_PB, selenoprotein B,
glycine/betaine/sarcosine/D-proline reductase family.
This model represents selenoprotein B of glycine
reductase, sarcosine reductase, betaine reductase,
D-proline reductase, and perhaps others. This model is
built in fragment mode to assist in recognizing
fragmentary translations. All members are expected to
contain an internal TGA codon, encoding selenocysteine,
which may be misinterpreted as a stop codon.
Length = 431
Score = 29.9 bits (67), Expect = 1.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 71 SYEALKYGTM-LDGLADLTGGITESISIRQDPTSSGRLLNKL--LDMTRCMETSG 122
S A KYG + GL L GG+ E+ DP + +++ +D+ R E G
Sbjct: 245 SSSASKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDRVVPVDVLRDYEKEG 299
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional.
Length = 895
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 97 IRQDPTSSGRLLNKLLDMTR 116
IRQ ++ RL+N LLDM R
Sbjct: 707 IRQQVLNTTRLVNNLLDMAR 726
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This
protein, TorS, is part of a regulatory system for the
torCAD operon that encodes the pterin molybdenum
cofactor-containing enzyme trimethylamine-N-oxide (TMAO)
reductase (TorA), a cognate chaperone (TorD), and a
penta-haem cytochrome (TorC). TorS works together with
the inducer-binding protein TorT and the response
regulator TorR. TorS contains histidine kinase ATPase
(pfam02518), HAMP (pfam00672), phosphoacceptor
(pfam00512), and phosphotransfer (pfam01627) domains and
a response regulator receiver domain (pfam00072) [Signal
transduction, Two-component systems].
Length = 968
Score = 29.7 bits (67), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 132 KDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLT 181
KDL+ +L FK + + + +RL+ A LE QLNT V ++
Sbjct: 260 KDLLVTLNKTPKLFKLLRQLSQILQKQQRLQQANLEQFTQLNTTVSQLVN 309
>gnl|CDD|218695 pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition
protein Sip1. This family consists of several
raffinose synthase proteins, also known as seed
inhibition (Sip1) proteins. Raffinose (O-alpha-
D-galactopyranosyl- (1-->6)- O-alpha-
D-glucopyranosyl-(1<-->2)- O-beta- D-fructofuranoside)
is a widespread oligosaccharide in plant seeds and
other tissues. Raffinose synthase (EC:2.4.1.82) is the
key enzyme that channels sucrose into the raffinose
oligosaccharide pathway. Raffinose family
oligosaccharides (RFOs) are ubiquitous in plant seeds
and are thought to play critical roles in the
acquisition of tolerance to desiccation and seed
longevity. Raffinose synthases are alkaline
alpha-galactosidases and are solely responsible for RFO
breakdown in germinating maize seeds, whereas acidic
galactosidases appear to have other functions.
Length = 742
Score = 28.9 bits (65), Expect = 2.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 15 FPGVFRFRLWWCGEWV 30
F +FRF+LWW +WV
Sbjct: 70 FMSIFRFKLWWMTQWV 85
>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter
subunit LolC; Provisional.
Length = 399
Score = 28.9 bits (65), Expect = 2.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 182 LRYMRKDGTLRFGDFVS 198
LRYMR RFG FVS
Sbjct: 11 LRYMRGRAADRFGRFVS 27
>gnl|CDD|215381 PLN02711, PLN02711, Probable galactinol--sucrose
galactosyltransferase.
Length = 777
Score = 29.0 bits (65), Expect = 2.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 15 FPGVFRFRLWWCGEWV 30
F +FRF++WW WV
Sbjct: 91 FMSIFRFKVWWTTHWV 106
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 28.4 bits (64), Expect = 2.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 SIRQDPTSSGRLLNKLLDMTRCMETSGTGRLK 127
SIR++ RL+ LLDMTR SG LK
Sbjct: 703 SIREESERLTRLVTNLLDMTRL--QSGGVNLK 732
>gnl|CDD|217649 pfam03633, Glyco_hydro_65C, Glycosyl hydrolase family 65,
C-terminal domain. This family of glycosyl hydrolases
contains vacuolar acid trehalase and maltose
phosphorylase.Maltose phosphorylase (MP) is a dimeric
enzyme that catalyzes the conversion of maltose and
inorganic phosphate into beta-D-glucose-1-phosphate and
glucose. The C-terminal domain forms a two layered
jelly roll motif. This domain is situated at the base
of the catalytic domain, however its function remains
unknown.
Length = 54
Score = 25.7 bits (57), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 12 PPSFPGVFRFRLWWCGEWVEVLVDDR 37
PP + G+ FRL + G ++V +D +
Sbjct: 4 PPQWSGL-SFRLRYRGRLLKVAIDHK 28
>gnl|CDD|203622 pfam07355, GRDB, Glycine/sarcosine/betaine reductase selenoprotein
B (GRDB). This family represents a conserved region
approximately 350 residues long within the selenoprotein
B component of the bacterial glycine, sarcosine and
betaine reductase complexes.
Length = 349
Score = 27.7 bits (62), Expect = 5.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 71 SYEALKYGTM-LDGLADLTGGITESISIRQDPTSSGRLLNKLL--DMTRCMETSG 122
S A KYG + G+ DLT G E+ DP + N++L D+ R +E G
Sbjct: 249 SSSASKYGKYDITGMDDLTSGTYETAHGGYDPVYANADPNRVLPVDVLRDLEKEG 303
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose
galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
compounds.
Length = 865
Score = 27.5 bits (61), Expect = 5.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 15 FPGVFRFRLWWCGEWV 30
F +FRF+ WW W+
Sbjct: 101 FLSIFRFKTWWSTMWI 116
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 24.8 bits (55), Expect = 7.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLM 135
+ R +T G G++ F +F L+
Sbjct: 28 ILFREFDTDGDGKISFEEFCVLL 50
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 26.7 bits (60), Expect = 8.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 149 TKEKTGILRAERLRDALLEVGYQLN--TEVLSVLTLRYM 185
T+E G E+LR+ LL+ +++ TE+L R
Sbjct: 37 TREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75
>gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional.
Length = 321
Score = 26.6 bits (59), Expect = 9.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 66 AKLHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCM 118
L G YE M++ D TGG+TE++++ + + G L M CM
Sbjct: 235 KALKGRYE------MVNIKLDKTGGLTEALALATEARAQGFAL-----MLGCM 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,674,672
Number of extensions: 982929
Number of successful extensions: 762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 22
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)