RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy107
(209 letters)
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 134 bits (339), Expect = 6e-37
Identities = 48/102 (47%), Positives = 66/102 (64%)
Query: 17 GVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALK 76
G+F F+ W GEWVEV+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YEAL
Sbjct: 137 GIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS 196
Query: 77 YGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCM 118
G +G D TGGI E +R+ P + +++ K L+ +
Sbjct: 197 GGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLL 238
Score = 100 bits (250), Expect = 7e-25
Identities = 27/118 (22%), Positives = 58/118 (49%)
Query: 92 TESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKE 151
++ R+D S G + M ++ G+G+L +F L ++ +Q ++ +
Sbjct: 558 RRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVD 617
Query: 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
++G + + +R AL E G++L ++ V+ R+ + + F +FV ++ L I F I
Sbjct: 618 RSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI 675
Score = 27.5 bits (60), Expect = 3.8
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 90 GITESISIRQDPTSSG-RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNH 148
G S +R+ +G +L +L + + F +F + L+ FK
Sbjct: 620 GTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQL 679
Query: 149 TKEKTGILR 157
E TG ++
Sbjct: 680 DPENTGTIQ 688
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 128 bits (322), Expect = 2e-34
Identities = 49/111 (44%), Positives = 71/111 (63%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
G S + G+F F+LW GEWV+V+VDD LPT +GKL F+ S ++FW LLEKAYAK
Sbjct: 128 GQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAK 187
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCM 118
++GSYEAL G + D TGG+TE +++ P+ +++ K L+ +
Sbjct: 188 VNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLL 238
Score = 103 bits (258), Expect = 6e-26
Identities = 30/118 (25%), Positives = 58/118 (49%)
Query: 92 TESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKE 151
+ ++ D + G ++ M M++ TG+L F +FK L ++K WQ +K +
Sbjct: 757 NKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETD 816
Query: 152 KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
++G + + L A G+ LN + S++ RY + G + F +F+S ++ L F
Sbjct: 817 RSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFRA 874
Score = 96.8 bits (240), Expect = 2e-23
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLN 173
M M+ G G+L +F L ++ + T F+ +K+G + A +R A+ G++L
Sbjct: 582 MVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLP 641
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
++ V+ R+ + + F +FV ++ L I F I
Sbjct: 642 CQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI 677
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine
proteinases, like, EF-hand, structural genomics,
structural genomics CON SGC; HET: AR7; 2.20A {Homo
sapiens}
Length = 326
Score = 118 bits (296), Expect = 2e-32
Identities = 50/112 (44%), Positives = 72/112 (64%)
Query: 10 SGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLH 69
++ G+F F+ W GEWVEV++DDRLPT NG+L FL S ++FW LLEKAYAKL+
Sbjct: 110 DFQENYAGIFHFQFWQYGEWVEVVIDDRLPTKNGQLLFLHSEQGNEFWSALLEKAYAKLN 169
Query: 70 GSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETS 121
G YEAL G+ ++G D TGGI+E +++ P + +++ K L + S
Sbjct: 170 GCYEALAGGSTVEGFEDFTGGISEFYDLKKPPANLYQIIRKALCAGSLLGCS 221
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor,
alpha-ketoamide, hydrolase, thiol protease; HET: K2Z;
1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A*
2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A
2ary_A 1zcm_A* 1mdw_A
Length = 339
Score = 113 bits (283), Expect = 2e-30
Identities = 48/109 (44%), Positives = 70/109 (64%)
Query: 10 SGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLH 69
S + G+F F+LW GEWV+V+VDD LPT +GKL F+ S ++FW LLEKAYAK++
Sbjct: 115 SFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVN 174
Query: 70 GSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCM 118
GSYEAL G + D TGG+TE +++ P+ +++ K L+ +
Sbjct: 175 GSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLL 223
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol
protease, structural genomics consortium, SGC,
hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB:
2p0r_A*
Length = 339
Score = 112 bits (280), Expect = 5e-30
Identities = 48/123 (39%), Positives = 70/123 (56%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
S P + G+F F+ W EW++V++DDRLPT +L FL S ++FW LLEKAYAK
Sbjct: 112 DQSFGPGYAGIFHFQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAK 171
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLK 127
L+GSYEALK G+ ++ + D TGG+ E+ ++ P + +L K L + R
Sbjct: 172 LNGSYEALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKALKRGSLLGCFIDTRSA 231
Query: 128 FSD 130
Sbjct: 232 AES 234
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 92.1 bits (229), Expect = 7e-24
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLN 173
M M++ TG+L F +FK L ++K WQ +K +++G + + L A G+ LN
Sbjct: 52 MVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLN 111
Query: 174 TEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
+ S++ RY + G + F +F+S ++ L F
Sbjct: 112 EHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRA 147
Score = 31.2 bits (71), Expect = 0.15
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 106 RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
L L M + G + F +F + L AFK+ K+ TG
Sbjct: 109 HLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTG 157
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 87.5 bits (217), Expect = 7e-22
Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 96 SIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGI 155
L M ++ +G + F++FK+L L W+ F + +++G
Sbjct: 60 QSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGT 119
Query: 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
+ + L+ AL +G++L+ + ++ + RY +G + F D+++ + L +
Sbjct: 120 VDPQELQKALTTMGFRLSPQAVNSIAKRY-STNGKITFDDYIACCVKLRALTDS 172
Score = 29.7 bits (67), Expect = 0.46
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 90 GITESISIRQDPTSSG-RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNH 148
G + +++ T+ G RL + ++ S G++ F D+ L+ +F+
Sbjct: 118 GTVDPQELQKALTTMGFRLSPQAVNSI-AKRYSTNGKITFDDYIACCVKLRALTDSFRRR 176
Query: 149 TKEKTGI 155
+ G+
Sbjct: 177 DTAQQGV 183
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 85.5 bits (212), Expect = 2e-21
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 96 SIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGI 155
+ T S L M ++ TG++ F+ FK+L +L W+ F ++ +G
Sbjct: 27 QSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGT 86
Query: 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
+ LR A+ +GY+L+ + L+ + RY K+G + F D+V+ + L +
Sbjct: 87 VEHHELRQAIGLMGYRLSPQTLTTIVKRY-SKNGRIFFDDYVACCVKLRALTDF 139
Score = 30.0 bits (68), Expect = 0.36
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 121 SGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
S GR+ F D+ L+ F+ + G
Sbjct: 116 SKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQG 149
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 82.8 bits (205), Expect = 3e-20
Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQL 172
M ++ +G + F++FK+L L W+ F + +++G + + L+ AL +G++L
Sbjct: 46 LMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRL 105
Query: 173 NTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
N + ++ + RY G + F D+++ + L +
Sbjct: 106 NPQTVNSIAKRY-STSGKITFDDYIACCVKLRALTDS 141
Score = 30.8 bits (70), Expect = 0.19
Identities = 12/66 (18%), Positives = 27/66 (40%)
Query: 90 GITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHT 149
G + +++ T+ G LN + S +G++ F D+ L+ +F+
Sbjct: 87 GTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRD 146
Query: 150 KEKTGI 155
+ G+
Sbjct: 147 SAQQGM 152
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 73.0 bits (179), Expect = 2e-16
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAER---LRDALLEVGY 170
+ ME GRL +F L L ++Q F+ +L ++ + + G
Sbjct: 51 LVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTDFLRGI 110
Query: 171 QLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
++ E+L ++TLRY G + F V ++ L
Sbjct: 111 FISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKT 149
Score = 34.1 bits (78), Expect = 0.013
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 106 RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGI 155
+ +LL + + GR+ F + L+ F+N +K+ G+
Sbjct: 111 FISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKGL 160
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 72.9 bits (179), Expect = 3e-16
Identities = 15/97 (15%), Positives = 37/97 (38%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQL 172
M R +T G + F +F + ++ F + + ++G L + AL ++G+ +
Sbjct: 91 RMMRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYI 150
Query: 173 NTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
N +L + R +++ + +
Sbjct: 151 NQRTSLLLHRLFARGMAFCDLNCWIAICAFAAQTRSA 187
Score = 27.8 bits (62), Expect = 2.3
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 142 QTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM------RKDGTLRFGD 195
F ++++G L L G +L+ + T M +G + F +
Sbjct: 54 YQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQ-----TALRMMRIFDTDFNGHISFYE 108
Query: 196 FVSSVLHLS 204
F++ +
Sbjct: 109 FMAMYKFME 117
Score = 26.3 bits (58), Expect = 6.2
Identities = 2/41 (4%), Positives = 13/41 (31%)
Query: 106 RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFK 146
+ + + + G + + + ++A++
Sbjct: 149 YINQRTSLLLHRLFARGMAFCDLNCWIAICAFAAQTRSAYQ 189
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 69.6 bits (171), Expect = 3e-15
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQL 172
+ + + FS+F + + WQ F+ + ++ +G++ L+ AL GY+L
Sbjct: 48 SIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRL 107
Query: 173 NTEVLSVLTLRY-MRKDGTLRFGDFVSSVLHLSIAFNI 209
+ + +L ++ + G + F DF+ + L +I
Sbjct: 108 SDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDI 145
Score = 29.5 bits (67), Expect = 0.43
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 106 RLLNKLLD-MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGI 155
RL ++ D + R + G G++ F DF L+ F+ + ++ G
Sbjct: 106 RLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGW 156
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 63.5 bits (155), Expect = 8e-13
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGY 170
+ + + +G + F +FKDL + + F+ G L + +R ALL GY
Sbjct: 65 TEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGY 124
Query: 171 QLNTEVLSVLTLRY-MRKDGTLRFGDFVS 198
Q++ + L ++ ++ G+L F D+V
Sbjct: 125 QVSEQTFQALMRKFDRQRRGSLGFDDYVE 153
Score = 29.2 bits (66), Expect = 0.69
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 120 TSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
G L F D+ +L + + F + +E+TG
Sbjct: 140 RQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTG 174
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 45.2 bits (107), Expect = 5e-06
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGY 170
L + +E GR+ + + L F+ G L + R+ + +G+
Sbjct: 160 LKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGF 219
Query: 171 QLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLS---IAFNI 209
+ ++ + + F ++V L L I +
Sbjct: 220 DKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAF 261
Score = 42.1 bits (99), Expect = 4e-05
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQL 172
+ R + + + FS++ L L + + +K+G L E ++ L +
Sbjct: 227 ALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPE 286
Query: 173 NTEVLSVLTLRYM------RKDGTLRFGDFVSSVLHL 203
+ + +L + +FV VL +
Sbjct: 287 SAR----KKFEHQFSVVDVDDSKSLSYQEFVMLVLLM 319
Score = 37.1 bits (86), Expect = 0.002
Identities = 12/107 (11%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 109 NKLLDMTRCMETSGTGRLKFSDFKDLMCS--LKYWQTAFKNHTKEKTGILRAERLRDALL 166
+L + + +E +G + K ++ + F + +G + L+ L
Sbjct: 90 QRLASLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLA 149
Query: 167 EVGYQLN-TEVLSVLTLRYMRKDGTLRFGDFVSSVLH---LSIAFNI 209
+ + + + + G + + V+ L F
Sbjct: 150 KYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRK 196
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 37.6 bits (88), Expect = 8e-04
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 118 METSGTGRLKFSDFKDLMC-------SLKYWQTAFKNHTKEKTGILRAERLRDALLEVGY 170
++ L + + + + +++ F + TG L ++++ L G
Sbjct: 56 IKELYGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGD 115
Query: 171 QLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202
L + L + + + F +L
Sbjct: 116 ALTDQEAIDA-LNAFSSEDNIDYKLFCEDILQ 146
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 32.8 bits (76), Expect = 0.029
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 19/100 (19%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLR 162
+M + +G G+++F +F +M + QT AF+ E TG + L+
Sbjct: 44 FNEMFNEADATGNGKIQFPEFLSMM-GRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQ 102
Query: 163 DALLEVGYQLNTEVLSVLTLRYM-----RKDGTLRFGDFV 197
DALL +G +L + G +R+ +F+
Sbjct: 103 DALLNLGDRLKPH-----EFAEFLGITETEKGQIRYDNFI 137
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 33.0 bits (76), Expect = 0.033
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 118 METSGTGRLKFSDFKDLMCSLKYWQT---------AFKNHTKEKTGILRAERLRDALLEV 168
+ + R+ F F ++ ++ + F+ KE G + LR L +
Sbjct: 57 SDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTL 116
Query: 169 GYQLNTEVLSVLTLRYMRK-----DGTLRFGDFV 197
G ++ E + + +G + + F+
Sbjct: 117 GEKMTEEE-----VETVLAGHEDSNGCINYEAFL 145
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 32.5 bits (74), Expect = 0.066
Identities = 15/124 (12%), Positives = 36/124 (29%), Gaps = 25/124 (20%)
Query: 99 QDPTSSG-RLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHT-------- 149
Q +G L ++ G++ + ++ + + + F+
Sbjct: 47 QARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFM 106
Query: 150 -------KEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR---------KDGTLRF 193
+ +G + E L++ L ++ + N V Y DG L
Sbjct: 107 KTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLEL 166
Query: 194 GDFV 197
+
Sbjct: 167 TEMA 170
Score = 30.6 bits (69), Expect = 0.27
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 20/105 (19%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLM--------------CSLKYWQTAFKNHTKEKTGILRA 158
M + +++ G+L+ ++ L+ K + AF+ + ++ G +
Sbjct: 151 LMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDE 210
Query: 159 ERLRDALLEVGYQLNTEVLSVLTLRYMR------KDGTLRFGDFV 197
L L ++ + E+ Y + G L D
Sbjct: 211 NELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLA 255
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 31.5 bits (72), Expect = 0.080
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMC-------SLKYWQTAFKNHTKEKTGILRAERLRDAL 165
M ++ K+ D +M + F + ++ AE LR
Sbjct: 7 SMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNS 66
Query: 166 LEVGYQLNTEVLSVLTLRYM------RKDGTLRFGDFV 197
+G E +S + M DG L +F
Sbjct: 67 GILG----IEGMSKEDAQGMVREGDLDGDGALNQTEFC 100
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 30.9 bits (70), Expect = 0.082
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM--RKDGTLRFGDFVS 198
F+N KT + E R L E L M G L++ DF+S
Sbjct: 29 EFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL-WNEMPVNAKGRLKYPDFLS 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.088
Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 37/151 (24%)
Query: 1 MQPFSTCGSSGPPSFPGVFRFRLWWCGEWVEVLVD-DRLPTVNGKLAFLQSVH-SDQFWP 58
+ F W L + P + +L S+ S P
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEW--------LENPSNTPDKD----YLLSIPIS---CP 239
Query: 59 --GLLEKA-Y---AKLHGSYEALKYGTMLDGLADLTG---GITESISIRQDPT--SSGRL 107
G+++ A Y AKL G G + L TG G+ +++I + + S
Sbjct: 240 LIGVIQLAHYVVTAKLLG----FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 108 LNKLLDM-----TRCMETSGTGRLKFSDFKD 133
+ K + + RC E L S +D
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Score = 31.6 bits (71), Expect = 0.23
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 31/149 (20%)
Query: 66 AKLHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMT-RCMETSGTG 124
L+ + + TE + +PT+ L+ K L +E S G
Sbjct: 24 TASFFIASQLQ-----EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 125 RLKFSDFKDLMCSLKYWQTAF---KN-HT--------KEKTGILRAERLR---DALLEVG 169
+ F L L ++ + + H + T + E ++ A +
Sbjct: 79 Q--FDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 170 YQLNTEVLSVLTLRYMRKDGTLR----FG 194
+ + S L R + +G + FG
Sbjct: 135 RPFDKKSNSAL-FRAVG-EGNAQLVAIFG 161
Score = 30.4 bits (68), Expect = 0.54
Identities = 20/132 (15%), Positives = 33/132 (25%), Gaps = 40/132 (30%)
Query: 85 ADLTGGITESISI----RQDPTS--------SGRLLNKLLDMTRCMETSGTGRLKFSD-F 131
AD T SI +P + G+ + + ET G+LK F
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-SAMIFETIVDGKLKTEKIF 1707
Query: 132 KDLMCSLKYWQTAFKNHTKEKTGILRAERLRD------ALLEVGYQLNTEVLSVLTLRYM 185
K++ F K L AL ++ +
Sbjct: 1708 KEINEHST--SYTF-RSEKGL--------LSATQFTQPALT---------LMEKAAFEDL 1747
Query: 186 RKDGTLRFGDFV 197
+ G +
Sbjct: 1748 KSKGLIPADATF 1759
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 31.4 bits (71), Expect = 0.17
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLR 162
L DM ++ G G + F +F +M + K T AF+ K+ G + A LR
Sbjct: 350 LQDMINEVDADGNGTIDFPEFLTMM-ARKMKDTDSEEEIREAFRVFDKDGNGYISAAELR 408
Query: 163 DALLEVGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFV 197
+ +G +L E + + +R DG + + +FV
Sbjct: 409 HVMTNLGEKLTDEEVDEM----IREADIDGDGQVNYEEFV 444
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 29.4 bits (67), Expect = 0.22
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFVS 198
FK + +G + + L+D L VG +L + L M K GT+ +G+F++
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDL----MDAADIDKSGTIDYGEFIA 83
Query: 199 SVLH 202
+ +H
Sbjct: 84 ATVH 87
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 30.3 bits (69), Expect = 0.29
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLN-TEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202
F + +G L ++ + D L ++GYQ ++ VL G + + DF+++ +
Sbjct: 62 IFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATID 121
Query: 203 LS 204
Sbjct: 122 KQ 123
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 29.8 bits (68), Expect = 0.37
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 22/111 (19%)
Query: 80 MLDGLADLTGGITES---ISIR---QDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKD 133
+ D G + R +P N+ + G L F +F
Sbjct: 17 LFDFWDGRDGAVDAFKLGDVCRCLGINPR------NEDVFAVGGTHKMGEKSLPFEEFLP 70
Query: 134 LMCSLKYWQT--------AFKNHTKEKTG-ILRAERLRDALLEVGYQLNTE 175
L + AFK +E G I AE LR L +G +L+ E
Sbjct: 71 AYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAE-LRHVLTALGERLSDE 120
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 29.9 bits (68), Expect = 0.37
Identities = 11/61 (18%), Positives = 25/61 (40%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHL 203
F ++ G + E+L+ L + G +L +L G + + +F+++ L
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDR 116
Query: 204 S 204
Sbjct: 117 K 117
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 29.4 bits (67), Expect = 0.44
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 20/101 (19%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLR 162
+LD+ ++ G +K+ DF +M K + AF+ + TG + + LR
Sbjct: 61 ILDLIDEYDSEGRHLMKYDDFYIVM-GEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLR 119
Query: 163 DALLEVGYQLNTEVLSVLTLRYM------RKDGTLRFGDFV 197
E+G L E LR M DG + +F+
Sbjct: 120 RVAKELGETLTDE-----ELRAMIEEFDLDGDGEINENEFI 155
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 30.0 bits (67), Expect = 0.45
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 26/106 (24%)
Query: 118 METSGTGRLKFSDFKDLMCSLKY-----------------WQTAFKNHTKEKTGILRAER 160
+ + GRL+ + +++ + + ++ + + +G + A
Sbjct: 66 YDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAE 125
Query: 161 LRDALLEVGYQLNTEVLSVLTLRYMR---------KDGTLRFGDFV 197
L++ L ++ Q ++ Y KDG L D
Sbjct: 126 LKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLA 171
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 29.8 bits (68), Expect = 0.47
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 96 SIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKN 147
S+ Q+PT + +L DM ++ G G + F +F +M + K T AF+
Sbjct: 39 SLGQNPTEA-----ELQDMINEVDADGNGTIDFPEFLTMM-ARKMKDTDSEEEIREAFRV 92
Query: 148 HTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFV 197
K+ G + A LR + +G +L E + + +R DG + + +FV
Sbjct: 93 FDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM----IREADIDGDGQVNYEEFV 143
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 29.4 bits (67), Expect = 0.48
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 118 METSGTGRLKFSDFKDLMCSLKYWQT---------AFKNHTKEKTGILRAERLRDALLEV 168
E + F +F ++ + + + KE G + LR L +
Sbjct: 55 KEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATL 114
Query: 169 GYQLNTEVLSVLTLRYMR----KDGTLRFGDFV 197
G ++ E + L M+ +G + + FV
Sbjct: 115 GEKMTEEEVEEL----MKGQEDSNGCINYEAFV 143
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 29.4 bits (67), Expect = 0.51
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLR 162
L DM ++ G G + F +F LM + K + AFK ++ G++ A LR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLSLM-ARKMKEQDSEEELIEAFKVFDRDGNGLISAAELR 106
Query: 163 DALLEVGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFV 197
+ +G +L + + + +R DG + + +FV
Sbjct: 107 HVMTNLGEKLTDDEVDEM----IREADIDGDGHINYEEFV 142
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 30.1 bits (68), Expect = 0.53
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185
+KFS+F+ +++ + +F+ + AE +A+ E+ QL + ++ + Y+
Sbjct: 1 MKFSEFRYERPNIEKLKASFQQALQSFQKASNAEEQNEAMKEI-NQLRNDFSTMAQICYI 59
Query: 186 RKD 188
R
Sbjct: 60 RHT 62
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 29.1 bits (66), Expect = 0.62
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 26/120 (21%)
Query: 99 QDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT---------AFKNHT 149
+PT + ++ + G K + + + T AFK
Sbjct: 42 MNPTEA-----QVHQHGG-TKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFD 95
Query: 150 KEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-------KDGTLRFGDFVSSVLH 202
+E G++ + +R+ L +G ++ + + + DG +++ D + V+
Sbjct: 96 REGQGLISSAEIRNVLKMLGERITEDQCNDI----FTFCDIREDIDGNIKYEDLMKKVMA 151
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 29.0 bits (66), Expect = 0.65
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 118 METSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLRDALLEVG 169
M + G + F+ F + K T AF +E +G + + LR+ L +G
Sbjct: 48 MMSEAPGPINFTMFLTMFGE-KLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMG 106
Query: 170 YQLNTEVLSVLTLRYMR-----KDGTLRFGDFV 197
+ E + + R K G + +F
Sbjct: 107 DRFTDEEVDEM----YREAPIDKKGNFNYVEFT 135
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 28.6 bits (65), Expect = 0.78
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLR 162
+ D+ ++ G ++FS+F LM S + AFK K G++ A L+
Sbjct: 49 VADLMNEIDVDGNHAIEFSEFLALM-SRQLKCNDSEQELLEAFKVFDKNGDGLISAAELK 107
Query: 163 DALLEVGYQLNTEVLSVLTLRYMR----KDGTLRFGDFV 197
L +G +L + + +R G + F
Sbjct: 108 HVLTSIGEKLTDAEVDEM----LREVSDGSGEINIKQFA 142
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 29.3 bits (66), Expect = 0.86
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 138 LKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNT---------EVLSVLTLRYMRKD 188
K F++ K G L + L D ++ + EV ++L ++
Sbjct: 345 TKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRN 404
Query: 189 GTLRFGDFVSSVLHLSIAFN 208
G + + +FV+ + +
Sbjct: 405 GYIDYSEFVTVAMDRKSLLS 424
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 28.2 bits (64), Expect = 1.2
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLR 162
+ M ++ GTG++ F DF +M + K + AFK ++TG + + L+
Sbjct: 44 IKKMISEIDKEGTGKMNFGDFLTVM-TQKMSEKDTKEEILKAFKLFDDDETGKISFKNLK 102
Query: 163 DALLEVGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFV 197
E+G L E L + + DG + +F+
Sbjct: 103 RVAKELGENLTDEELQEM----IDEADRDGDGEVSEQEFL 138
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 28.2 bits (64), Expect = 1.4
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 19/89 (21%)
Query: 122 GTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLRDALLEVGYQLN 173
G L F+ F + S K T AF +++T L E ++D L +G N
Sbjct: 63 APGPLNFTMFLSIF-SDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFN 121
Query: 174 TEVLSVLTLRYM-----RKDGTLRFGDFV 197
+ +R + G + F
Sbjct: 122 KDE-----MRMTFKEAPVEGGKFDYVKFT 145
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 28.3 bits (64), Expect = 1.4
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLR 162
+ M ++ G+G + F +F +M + K + AF+ + +G + + LR
Sbjct: 66 IKKMISEIDKDGSGTIDFEEFLTMM-TAKMGERDSREEILKAFRLFDDDNSGTITIKDLR 124
Query: 163 DALLEVGYQLNTEVLSVLTLRYMRK------DGTLRFGDFV 197
E+G L E L+ M D + +F+
Sbjct: 125 RVAKELGENLTEE-----ELQEMIAEADRNDDNEIDEDEFI 160
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 27.9 bits (63), Expect = 1.4
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 118 METSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLRDALLEVG 169
M +G + F+ F + K AFK + G ++ L + L G
Sbjct: 67 MIKEASGPINFTVFLTMF-GEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGG 125
Query: 170 YQLNTEVLSVLTLRYMRK------DGTLRFGDFV 197
+ E ++ M G + + +
Sbjct: 126 GRFTPE-----EIKNMWAAFPPDVAGNVDYKNIC 154
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 27.9 bits (63), Expect = 1.4
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 118 METSGTGRLKFSDFKDLMCSLKYWQT--------AFKNHTKEKTGILRAERLRDALLEVG 169
M G+L F+ F L K T AF ++ G + + L+D L +G
Sbjct: 57 MLKECPGQLNFTAFLTLF-GEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMG 115
Query: 170 YQLNTEVLSVLTLRYM-----RKDGTLRFGDFV 197
+ E ++ + K+ + V
Sbjct: 116 DNFSKE-----EIKNVWKDAPLKNKQFNYNKMV 143
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 27.9 bits (63), Expect = 1.7
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 118 METSGTGRLKFSDFKDLMCSLKYWQT---------AFKNHTKEKTGILRAERLRDALLEV 168
+E++ + F ++ + F+ K+ TG++ LR L +
Sbjct: 46 IESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSL 105
Query: 169 GYQLNTE 175
G +L+ E
Sbjct: 106 GEKLSNE 112
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 27.9 bits (63), Expect = 1.7
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT-----------AFKNHTKEKTGILRAE 159
+ + + G G + F FK + + AF+ + KE G + +
Sbjct: 52 IRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTD 111
Query: 160 RLRDALLEVGYQLNTEVLSVLTLRYMRK------DGTLRFGDFV 197
+R+ L E+ L++E L M GT+ F +F+
Sbjct: 112 VMREILAELDETLSSE-----DLDAMIDEIDADGSGTVDFEEFM 150
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 27.9 bits (63), Expect = 1.7
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT----------AFKNHTKEKTGILRAER 160
L +M ++ G+G + F +F +M + F+ K G + E
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEE 116
Query: 161 LRDALLEVGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFV 197
L+ L G + + + L M+ DG + + +F+
Sbjct: 117 LKIMLQATGETITEDDIEEL----MKDGDKNNDGRIDYDEFL 154
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 27.5 bits (62), Expect = 2.1
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 21/103 (20%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQT----------AFKNHTKEKTGILRAER 160
L + ++ G+G + F +F +M F+ K G + E
Sbjct: 58 LDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEE 117
Query: 161 LRDALLEVGYQLNTEVLSVLTLRYMRK------DGTLRFGDFV 197
L + L G + E + + K DG + F +F+
Sbjct: 118 LGEILRATGEHVTEE-----DIEDLMKDSDKNNDGRIDFDEFL 155
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 27.5 bits (62), Expect = 2.4
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLN-TEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202
F +K+G + E L+ L VG L +E+L ++ + GT+ + +F+++ LH
Sbjct: 32 MFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLH 91
Query: 203 LS 204
L+
Sbjct: 92 LN 93
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 27.3 bits (61), Expect = 2.8
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLH- 202
F G L + L VG ++ +L + G + + +F++
Sbjct: 44 LFYKLDTNHNGSLSHREIYTVLASVG-IKKWDINRILQALDINDRGNITYTEFMAGCYRW 102
Query: 203 -------LSIAFNI 209
L AFN
Sbjct: 103 KNIESTFLKAAFNK 116
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 27.7 bits (62), Expect = 3.0
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 15/86 (17%)
Query: 138 LKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR----------- 186
K F+ G+L + L E + S++
Sbjct: 330 TKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPL 389
Query: 187 ----KDGTLRFGDFVSSVLHLSIAFN 208
G++ + +F++S + +I +
Sbjct: 390 LDMDGSGSIEYSEFIASAIDRTILLS 415
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 26.7 bits (59), Expect = 3.6
Identities = 5/53 (9%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRD 163
+ M + + + + DF ++M +++ +L+ + +
Sbjct: 88 MKKMISEVTGGVSDTISYRDFVNMM-------------LGKRSAVLKLVMMFE 127
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 27.4 bits (61), Expect = 4.5
Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 108 LNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLE 167
+L + M+ +G G+L ++ + L + + +++ DA+
Sbjct: 334 TKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAV-- 391
Query: 168 VGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFN 208
K+G + + +FV+ + +
Sbjct: 392 ----------------DFDKNGYIEYSEFVTVAMDRKTLLS 416
>2o2z_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus
halodurans} PDB: 2hzb_A
Length = 323
Score = 26.8 bits (59), Expect = 4.7
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 20/135 (14%)
Query: 78 GTMLDGLADLTGGITESISIRQDPTSSGRLLNKL-----LDMTRCMET-SGTGRLKFSDF 131
+L GL IT +++ D SSGRL +L D+ + S L F
Sbjct: 17 SVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEPLLEQLF 76
Query: 132 KDLMCSLKYWQTAFKNHTKEK----TGILRAERLRDALLEVG--YQLNTEVL----SVLT 181
+ + H+ + E+ + +VL +
Sbjct: 77 QHRFEN----GNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRGKVLPASNRSII 132
Query: 182 LRYMRKDGTLRFGDF 196
L +DGT+ G+
Sbjct: 133 LHGEMEDGTIVTGES 147
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 26.4 bits (59), Expect = 4.9
Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 29/118 (24%)
Query: 99 QDPTSSGRLLNKLLDMTRC-METSGTGRLKFSDFKDLMCSLKYWQT-------------A 144
+PT+ + D+ L L+ + + A
Sbjct: 35 YNPTNQ-----LVQDIINADSSLRDASSLTLDQITGLI-EVNEKELDATTKAKTEDFVKA 88
Query: 145 FKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFV 197
F+ KE TG + LR L +G +L + L ++ +G + + F+
Sbjct: 89 FQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDEL----LKGVEVDSNGEIDYKKFI 142
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 26.4 bits (59), Expect = 5.0
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLN-TEVLSVLTLRYMRKDGTLRFGDFVSSVLH 202
FK + +G + + L+D L VG +L +E+ ++ + K GT+ +G+F+++ +H
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVH 74
Query: 203 LS 204
L+
Sbjct: 75 LN 76
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 27.0 bits (60), Expect = 5.3
Identities = 7/63 (11%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 126 LKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYM 185
+ F D++ +++ + F ++ E + + + ++ + ++ L Y+
Sbjct: 4 MSFKDYEYKRPNIEELKEKFTVALEKFDNAKTVEEQKQVIHSI-NEIRNDFGTMGNLCYI 62
Query: 186 RKD 188
R
Sbjct: 63 RHS 65
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 27.0 bits (60), Expect = 6.0
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 138 LKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLN---------TEVLSVLTLRYMRKD 188
K FK K G L + L + + N EV ++L K+
Sbjct: 354 RKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKN 413
Query: 189 GTLRFGDFVSSVLHLSIAFN 208
G + + +F+S + I F+
Sbjct: 414 GYIEYSEFISVCMDKQILFS 433
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 26.8 bits (58), Expect = 6.1
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 109 NKLLDMTRCMETSGTGRLKFSDFKDLMCSLKY---WQTAFKNHTKEKTGILRAERLRDAL 165
+ R + S T L+ + + L AF+ L ERL L
Sbjct: 47 GYARKIFRECDHSQTDSLEDEEIETFYKMLTQRAEIDRAFEEAAGSA-ETLSVERLVTFL 105
Query: 166 LEV 168
Sbjct: 106 QHQ 108
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 24.9 bits (55), Expect = 7.2
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLM 135
+ ++ + + +G+ F +M
Sbjct: 52 ISEIVKDYDKDNSGKFDQETFLTIM 76
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 26.4 bits (59), Expect = 7.6
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 141 WQTAFKNH---TKEKTGILRAERLRDALLEVGYQLNTEV 176
++ K++ A L+ L G +L
Sbjct: 257 FEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS 295
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 25.9 bits (57), Expect = 10.0
Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 30/127 (23%)
Query: 109 NKLLD-MTRCMETSGTGRLKFSDFKDLMCSLKYWQT-----------------------A 144
N L D + G+ R+ F F ++ + + A
Sbjct: 60 NPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYA 119
Query: 145 FKNHTKEKTGILRAERLRDALLE-VGYQLNTEVLSVLTLRYMR-----KDGTLRFGDFVS 198
F+ + ++ G + + L VG Q+ E L + R ++ DG + F +F
Sbjct: 120 FQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
Query: 199 SVLHLSI 205
S+ + +
Sbjct: 180 SLEKMDV 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,287,711
Number of extensions: 189337
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 87
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.7 bits)