RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy107
(209 letters)
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 323
Score = 107 bits (268), Expect = 1e-28
Identities = 48/102 (47%), Positives = 66/102 (64%)
Query: 17 GVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALK 76
G+F F+ W GEWVEV+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YEAL
Sbjct: 116 GIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS 175
Query: 77 YGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCM 118
G +G D TGGI E +R+ P + +++ K L+ +
Sbjct: 176 GGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLL 217
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 322
Score = 107 bits (267), Expect = 1e-28
Identities = 50/117 (42%), Positives = 72/117 (61%)
Query: 8 GSSGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAK 67
G S + G+F F+LW GEWV+V+VDD LPT +GKL F+ S ++FW LLEKAYAK
Sbjct: 106 GQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAK 165
Query: 68 LHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTG 124
++GSYEAL G + D TGG+TE +++ P+ +++ K L+ + S
Sbjct: 166 VNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINI 222
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain
(domain II) {Human (Homo sapiens), calpain 9 [TaxId:
9606]}
Length = 310
Score = 101 bits (252), Expect = 1e-26
Identities = 48/116 (41%), Positives = 70/116 (60%)
Query: 10 SGPPSFPGVFRFRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLH 69
S P + G+F F+ W EW++V++DDRLPT +L FL S ++FW LLEKAYAKL+
Sbjct: 95 SFGPGYAGIFHFQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLN 154
Query: 70 GSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGR 125
GSYEALK G+ ++ + D TGG+ E+ ++ P + +L K L + R
Sbjct: 155 GSYEALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKALKRGSLLGCFIDTR 210
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 61.2 bits (148), Expect = 1e-12
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 96 SIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGI 155
+ T S L M ++ TG++ F+ FK+L +L W+ F ++ +G
Sbjct: 27 QSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGT 86
Query: 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVSSVLHLSIAFNI 209
+ LR A+ +GY+L+ + L+ + RY K+G + F D+V+ + L +
Sbjct: 87 VEHHELRQAIGLMGYRLSPQTLTTIVKRY-SKNGRIFFDDYVACCVKLRALTDF 139
Score = 28.8 bits (64), Expect = 0.31
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 117 CMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
S GR+ F D+ L+ F+ + G
Sbjct: 112 VKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQG 149
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 146
Score = 36.7 bits (84), Expect = 5e-04
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKY-------WQTAFKNHTKEKTGILRAERLRD 163
+ D+ ++ G +++FS+F LM AFK K G++ A L+
Sbjct: 48 VNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKH 107
Query: 164 ALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFV 197
L +G +L + + G + F
Sbjct: 108 VLTSIGEKLTDAEVDDMLREVSDGSGEINIQQFA 141
>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein
{Leishmania major [TaxId: 5664]}
Length = 182
Score = 33.9 bits (76), Expect = 0.008
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGIL 156
+ R + G L F D+ +L + + F + +E+TG +
Sbjct: 122 FQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQV 167
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11
s100a10, calpactin [TaxId: 9606]}
Length = 92
Score = 31.5 bits (71), Expect = 0.019
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRK------DGTLRFGDFV 197
F +K G L E LR + + L + + K DG + F F
Sbjct: 14 TFHKFAGDK-GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFF 72
Query: 198 SSVLHLSIAFN 208
S + L+IA N
Sbjct: 73 SLIAGLTIACN 83
>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 87
Score = 30.7 bits (69), Expect = 0.027
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRY-MRKDGTLRFGDFVSSVLH 202
FK + +G + + L+D L VG +L + L + K GT+ +G+F+++ +H
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVH 87
>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), mu-type
[TaxId: 10116]}
Length = 188
Score = 31.2 bits (70), Expect = 0.059
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 109 NKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
+L + + F +F + L+ FK E TG
Sbjct: 128 CQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTG 173
>gi|147905802|ref|NP_001079458.1|(49-190:190) hypothetical protein
LOC379145 [Xenopus laevis] gi|27552841|gb|AAH42934.1|
MGC53335 protein [Xenopus laevis]
gi|148231599|ref|NP_001080252.1| myosin light chain,
alkali, fast skeletal muscle [Xenopus laevis]
gi|602988|gb|AAB00988.1| MLC1f/3f gene product
gi|27371205|gb|AAH41529.1| Myl1-prov protein [Xenopus
laevis] gi|45360563|ref|NP_988954.1| myosin, light
chain 1, alkali; skeletal, fast [Xenopus (Silurana)
tropicalis] gi|38174703|gb|AAH61302.1| Myosin, light
chain 1, alkali; skeletal, fast [Xenopus tropicalis]
gi|58476384|gb|AAH89727.1| Myosin, light chain 1,
alkali; skeletal, fast [Xenopus tropicalis]
gi|89272939|emb|CAJ83178.1| myosin, light polypeptide 1,
alkali; skeletal, fast [Xenopus tropicalis]
gi|197246634|gb|AAI69133.1| Myl1 protein [Xenopus
tropicalis] E=2e-66 s/c=1.79 id=85% cov=99%
Length = 142
Score = 29.6 bits (65), Expect = 0.17
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 135 MCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFG 194
S + + + KE G + LR L +G ++ E + L +G + +
Sbjct: 74 QGSFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVESLLAGQEDSNGCINYE 133
Query: 195 DFVSSVLHL 203
FV ++ +
Sbjct: 134 AFVKHIMSV 142
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens),
s100a4 [TaxId: 9606]}
Length = 93
Score = 28.7 bits (64), Expect = 0.19
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 144 AFKNHTKEK--TGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRK------DGTLRFGD 195
F ++ ++ L L++ L + + + D + F +
Sbjct: 14 TFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQE 73
Query: 196 FVSSVLHLSIAFN 208
+ + +++ N
Sbjct: 74 YCVFLSCIAMMCN 86
>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 139
Score = 29.1 bits (64), Expect = 0.23
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 139 KYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVS 198
+ + F+ KE G + LR L +G ++ E + + + +G + + F+
Sbjct: 77 EDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLK 136
Query: 199 SVL 201
+L
Sbjct: 137 HIL 139
>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 181
Score = 28.5 bits (62), Expect = 0.39
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 114 MTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILR 157
+ R + G G++ F DF L+ F+ + ++ G ++
Sbjct: 127 LIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQ 170
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 28.8 bits (63), Expect = 0.48
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQL 172
+ R + + + FS++ L L + + +K+G L E ++ L +
Sbjct: 227 ALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPE 286
Query: 173 NT--EVLSVLTLRYMRKDGTLRFGDFVSSVLHL 203
+ + ++ + +L + +FV VL +
Sbjct: 287 SARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLM 319
Score = 24.6 bits (52), Expect = 9.6
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLMCSLKY 140
++ + L + +F L+ + +
Sbjct: 292 FEHQFSVVDVDDSKSLSYQEFVMLVLLMFH 321
>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), M-type
[TaxId: 10116]}
Length = 186
Score = 27.8 bits (61), Expect = 0.81
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 124 GRLKFSDFKDLMCSLKYWQTAFKNHTKEKTG 154
+ F +F + L+ FK E TG
Sbjct: 141 LIIDFDNFVRCLVRLEILFKIFKQLDPENTG 171
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces
pombe) [TaxId: 4896]}
Length = 140
Score = 27.3 bits (59), Expect = 0.95
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 135 MCSLKYWQTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFG 194
+ + F+ K+ TG++ LR L +G +L+ E + L KDG + +
Sbjct: 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYH 131
Query: 195 DFVSSVL 201
DFV +L
Sbjct: 132 DFVQMIL 138
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 26.3 bits (57), Expect = 1.0
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 144 AFKNHTKEKTGILRAERLRDALLEVGYQLN-TEVLSVLTLRYMRKDGTLRFGDFVS 198
F+N KT + E R L + + + G L++ DF+S
Sbjct: 25 EFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 80
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 75
Score = 26.0 bits (57), Expect = 1.1
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLK 139
D+ + + + GR+ F +F +M ++
Sbjct: 49 DLMKDSDKNNDGRIDFDEFLKMMEGVQ 75
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 162
Score = 27.2 bits (59), Expect = 1.2
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLK 139
D+ + + + GR+ F +F +M ++
Sbjct: 136 DLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus
norvegicus), s100a1 [TaxId: 10116]}
Length = 93
Score = 26.1 bits (57), Expect = 1.4
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 144 AFKNHTKE--KTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRK------DGTLRFGD 195
F H+ + L + L+D L + + K DG + F +
Sbjct: 14 VFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQE 73
Query: 196 FVSSVLHLSIAFN 208
FV V L++A N
Sbjct: 74 FVVLVAALTVACN 86
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 25.3 bits (55), Expect = 2.0
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLK 139
++ + + + GR+ + +F + M ++
Sbjct: 55 ELMKDGDKNNDGRIDYDEFLEFMKGVE 81
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 85
Score = 25.2 bits (55), Expect = 2.7
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 60 LLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIR 98
+L+ A A E LK + L I E+I+IR
Sbjct: 41 VLDAAVAGKITDVEVLKA-QFEEERVALVAKIGENINIR 78
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac
isoform [TaxId: 9606]}
Length = 82
Score = 24.5 bits (53), Expect = 3.5
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 114 MTRCMETSGTGRLKFSDFKDLM 135
M ++ G+G + F +F +M
Sbjct: 57 MIDEVDEDGSGTVDFDEFLVMM 78
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium
album) [TaxId: 3559]}
Length = 81
Score = 24.5 bits (53), Expect = 4.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCSLK 139
M ++T G G + F +F D + +
Sbjct: 45 RMMAEIDTDGDGFISFDEFTDFARANR 71
Score = 23.7 bits (51), Expect = 8.9
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 142 QTAFKNHTKEKTGILRAERLRDALLEVGYQLNTEVLSVLTLRYMRKDGTLRFGDFVS 198
+ FK G + + L DAL +G EV ++ DG + F +F
Sbjct: 9 ERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTD 65
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a3 [TaxId: 9606]}
Length = 93
Score = 24.4 bits (53), Expect = 4.9
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 156 LRAERLRDALLEVGYQLNTEVLSVLTLRYMRK------DGTLRFGDFVSSVLHLSIAFN 208
L L++ L + D + F ++V S+ L + +
Sbjct: 28 LCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCH 86
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Length = 65
Score = 23.8 bits (51), Expect = 5.2
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 111 LLDMTRCMETSGTGRLKFSDFKDLM 135
+ +M R + G G++ + +F +M
Sbjct: 41 VDEMIREADIDGDGQVNYEEFVQMM 65
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 81
Score = 24.2 bits (52), Expect = 5.6
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLM 135
+ ++ G+G + F +F +M
Sbjct: 54 AIIEEVDEDGSGTIDFEEFLVMM 76
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia)
[TaxId: 5888]}
Length = 146
Score = 24.9 bits (53), Expect = 5.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCS 137
+M R + G G + + +F +M S
Sbjct: 122 EMIREADIDGDGHINYEEFVRMMVS 146
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 145
Score = 24.9 bits (54), Expect = 5.7
Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 21/133 (15%)
Query: 31 EVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGG 90
E LV+ ++A+ + +H +++ Y G M +++
Sbjct: 29 ETLVEAG---YAPEMAYFECLHE---LKLIVDLMYEG--GIAN------MNYSISNNAEY 74
Query: 91 ITESISIRQDPTSSGRLLNKLLDMTRCMETSGTGRLKFSDFKDLMCSLKYWQTAFKNHTK 150
S + L ++ ++ ++ S+ ++ H
Sbjct: 75 GEYVTGPEVINAESRAAMRNALKR---IQDGEYAKMFITEGAANYPSMTAYRRNNAAHPI 131
Query: 151 EKTGILRAERLRD 163
E+ G E+LR
Sbjct: 132 EQIG----EKLRA 140
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 25.4 bits (55), Expect = 5.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 12 PPSFPGVFRFRLWWCGEWVEVLVDDRLPTVN 42
P P VF +++ EW + + PTVN
Sbjct: 5 PNQQPEVFCNQIFINNEWHDAVSRKTFPTVN 35
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 25.5 bits (55), Expect = 6.3
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 8/122 (6%)
Query: 34 VDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITE 93
++ L F Q V SD+ +A KL + +M + + + E
Sbjct: 59 IEVTYIVERTMLDFPQHVSSDREVRAASTEADKKLSRFDIEM---SMREDVFQRIVHLQE 115
Query: 94 SISIRQDPTSSGRLLNKLL-DMTRC-METSGTGRLKFSDFKDLMCSLKYWQTAFKNHTKE 151
+ + + + R L K + R + S R + K + + F + E
Sbjct: 116 TCDLEKIKPEARRYLEKSIKMGKRNGLHLSEHIRNE---IKSMKKRMSELCIDFNKNLNE 172
Query: 152 KT 153
Sbjct: 173 DD 174
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
(Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 68
Score = 23.3 bits (50), Expect = 7.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLM 135
+ + + G G + +F DL+
Sbjct: 43 EAMKEADEDGNGVIDIPEFMDLI 65
>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 156
Score = 24.5 bits (52), Expect = 8.4
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLM 135
++ + + + GR+ + +F + M
Sbjct: 131 ELMKDGDKNNDGRIDYDEFLEFM 153
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 108
Score = 23.8 bits (51), Expect = 9.8
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 113 DMTRCMETSGTGRLKFSDFKDLMCS 137
+ + G G++ +F++++ S
Sbjct: 84 SLMDAADNDGDGKIGADEFQEMVHS 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 808,058
Number of extensions: 35488
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 43
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)