BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10704
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61221|HIF1A_MOUSE Hypoxia-inducible factor 1-alpha OS=Mus musculus GN=Hif1a PE=1 SV=3
Length = 836
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 121/201 (60%), Gaps = 43/201 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+ +L G S+++ THPCDH E++ +L+ +++ QRS F+R+KCTLTS+GR +N
Sbjct: 124 QFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKELNTQRSFFLRMKCTLTSRGRTMN 183
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+K+AT+KV+HCTGH+ + D + ++P+
Sbjct: 184 IKSATWKVLHCTGHI-------------------------------HVYDTNSNQPQ--C 210
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFN 175
G K+ P C V I EPIPHP+N ++PL S+TFL++HSLDMKF+Y DE + + +G+
Sbjct: 211 GYKK----PPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYE 266
Query: 176 PDIFIAKSVFDFHHAQDSFHI 196
P+ + +S+++++HA DS H+
Sbjct: 267 PEELLGRSIYEYYHALDSDHL 287
>sp|Q9YIB9|HIF1A_CHICK Hypoxia-inducible factor 1-alpha OS=Gallus gallus GN=HIF1A PE=2
SV=2
Length = 811
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 117/201 (58%), Gaps = 43/201 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+ DL G S+++ THPCDH E++ +L+ ++ +RS F+R+KCTLTS+GR VN
Sbjct: 124 QFDLTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGRTVN 183
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+K+AT+KV+HCTGH+ D NQ+
Sbjct: 184 IKSATWKVLHCTGHI--------------RVYDTCNNQT-------------------HC 210
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFN 175
G K+ P C V I EPIPHP+N +VPL S+TFL++HSLDMKF+Y DE + + +G+
Sbjct: 211 GYKK----PPMTCLVLICEPIPHPSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYE 266
Query: 176 PDIFIAKSVFDFHHAQDSFHI 196
P+ + +S+++++HA DS H+
Sbjct: 267 PEELLGRSIYEYYHALDSDHL 287
>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1
Length = 826
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 120/201 (59%), Gaps = 43/201 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+ +L G S+++ THPCDH E++ +L+ ++ QRS F+R+KCTLTS+GR +N
Sbjct: 124 QFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGRTMN 183
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+K+AT+KV+HCTGH+ + D + ++P+
Sbjct: 184 IKSATWKVLHCTGHI-------------------------------HVYDTNSNQPQ--C 210
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFN 175
G K+ P C V I EPIPHP+N ++PL S+TFL++HSLDMKF+Y DE + + +G+
Sbjct: 211 GYKK----PPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYE 266
Query: 176 PDIFIAKSVFDFHHAQDSFHI 196
P+ + +S+++++HA DS H+
Sbjct: 267 PEELLGRSIYEYYHALDSDHL 287
>sp|O35800|HIF1A_RAT Hypoxia-inducible factor 1-alpha OS=Rattus norvegicus GN=Hif1a PE=2
SV=1
Length = 825
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 117/201 (58%), Gaps = 43/201 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+ +L G S+++ THPCDH E++ +L+ ++ QRS F+R+KCTLTS+GR +N
Sbjct: 124 QFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKEQNTQRSFFLRMKCTLTSRGRTMN 183
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+K+AT+KV+HCTGH I D S + +
Sbjct: 184 IKSATWKVLHCTGH---------------------------------IHVYDTSSNQPQC 210
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFN 175
G K+ P C V I EPIPHP+N ++PL S+TFL++HSLDMKF+Y DE + + +G+
Sbjct: 211 GYKK----PPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYE 266
Query: 176 PDIFIAKSVFDFHHAQDSFHI 196
P+ + +S+++++HA DS H+
Sbjct: 267 PEELLGRSIYEYYHALDSDHL 287
>sp|Q309Z6|HIF1A_EOSBA Hypoxia-inducible factor 1-alpha OS=Eospalax baileyi GN=HIF1A PE=2
SV=1
Length = 819
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 120/201 (59%), Gaps = 43/201 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+ +L G S+++ THPCDH E++ +L+ ++ QRS F+R+KCTLTS+GR +N
Sbjct: 125 QFELTGHSVFDFTHPCDHEEMREMLTHRNGPIKKGKEQNTQRSFFLRMKCTLTSRGRTMN 184
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+K+AT+KV+HCTGH+ + D + ++P+
Sbjct: 185 IKSATWKVLHCTGHI-------------------------------HVYDTNSNQPQ--C 211
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFN 175
G K+ P C V I EPIPHP+N ++PL S+TFL++HSLDMKF+Y DE + + +G+
Sbjct: 212 GYKK----PPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYE 267
Query: 176 PDIFIAKSVFDFHHAQDSFHI 196
P+ + +S+++++HA DS H+
Sbjct: 268 PEELLGRSIYEYYHALDSDHL 288
>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1-alpha OS=Bos taurus GN=HIF1A PE=2 SV=1
Length = 823
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 118/201 (58%), Gaps = 43/201 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+ +L G S+++ THPCDH E++ +L+ ++ QRS F+R+KCTLTS+GR +N
Sbjct: 124 QFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGRTMN 183
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+K+AT+KV+HCTGH+ D NQS +
Sbjct: 184 IKSATWKVLHCTGHI--------------HVYDTNSNQS-------------------QC 210
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFN 175
G K+ P C V I EPIPHP+N ++PL S+TFL++HSLDMKF+Y DE + + +G+
Sbjct: 211 GYKK----PPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYE 266
Query: 176 PDIFIAKSVFDFHHAQDSFHI 196
P+ + +S+++++HA DS H+
Sbjct: 267 PEELLGRSIYEYYHALDSDHL 287
>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens GN=HIF1A
PE=2 SV=1
Length = 823
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 118/201 (58%), Gaps = 43/201 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+ +L G S+++ THPCDH E++ +L+ ++ QRS F+R+KCTLTS+GR +N
Sbjct: 124 QFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGRTMN 183
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+K+AT+KV+HCTGH+ D NQS +
Sbjct: 184 IKSATWKVLHCTGHI--------------HVYDTNSNQS-------------------QC 210
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFN 175
G K+ P C V I EPIPHP+N ++PL S+TFL++HSLDMKF+Y DE + + +G+
Sbjct: 211 GYKK----PPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYE 266
Query: 176 PDIFIAKSVFDFHHAQDSFHI 196
P+ + +S+++++HA DS H+
Sbjct: 267 PEELLGRSIYEYYHALDSDHL 287
>sp|Q24167|SIMA_DROME Protein similar OS=Drosophila melanogaster GN=sima PE=2 SV=2
Length = 1507
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 111/215 (51%), Gaps = 63/215 (29%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQ--------RSVFIRLKCTL 48
K+D +GQ I+E +H CDH+E+K LS A +D Q R +F+RLKCTL
Sbjct: 207 KIDTLGQQIWEYSHQCDHAEIKEALSLKRELAQKVKDEPQQNSGVSTHHRDLFVRLKCTL 266
Query: 49 TSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKD 108
TS+GR++N+K+A+YKVIH TGHLV N
Sbjct: 267 TSRGRSINIKSASYKVIHITGHLVVNAK-------------------------------- 294
Query: 109 DSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADET 167
GE+ +AIG PIPHP+N ++PL + TFLTKHSLDM+FTY D+
Sbjct: 295 --------GER---------LLMAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDK 337
Query: 168 MEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
M D LG++P + S+F H DS + FK+
Sbjct: 338 MHDLLGYSPKDLLDTSLFSCQHGADSERLMATFKS 372
>sp|Q98SW2|HIF1A_ONCMY Hypoxia-inducible factor 1-alpha OS=Oncorhynchus mykiss GN=hif1a
PE=2 SV=1
Length = 766
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 124/208 (59%), Gaps = 45/208 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSIL-----SANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
++DL G S++E THPCDH E++ +L ++ +++ +RS F+R+KCTLT++GR VN
Sbjct: 126 QIDLTGLSVFEYTHPCDHEELREMLVHRTGTSKKSKEPNTERSFFLRMKCTLTNRGRTVN 185
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
VK+AT+KV+HC+ H+ +++PA E+
Sbjct: 186 VKSATWKVLHCSDHVRVHESPA----------------------------------EQIP 211
Query: 117 GEKRRVVTEPSHCF-VAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGF 174
G + EPS + V + +PIPHP+N + PL ++TFL++H+LDMKFTY DE + + +G+
Sbjct: 212 GGHK----EPSVPYLVLVCDPIPHPSNIEAPLDTKTFLSRHTLDMKFTYCDERITELMGY 267
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
+P+ + +SV++++HA DS H+ N
Sbjct: 268 DPEDLLNRSVYEYYHALDSDHLMKTHHN 295
>sp|Q99814|EPAS1_HUMAN Endothelial PAS domain-containing protein 1 OS=Homo sapiens
GN=EPAS1 PE=1 SV=3
Length = 870
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 121/212 (57%), Gaps = 46/212 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-------ANHTEDIRAQRSVFIRLKCTLTSKGRN 54
+V+L G SI++ THPCDH E++ LS ++D+ +R F+R+KCT+T++GR
Sbjct: 123 QVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTNRGRT 182
Query: 55 VNVKAATYKVIHCTGHL-VQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPE 113
VN+K+AT+KV+HCTG + V N P N
Sbjct: 183 VNLKSATWKVLHCTGQVKVYNNCPPHNSL------------------------------- 211
Query: 114 EEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFL 172
G K +++ C + + EPI HP++ D+PL S+TFL++HS+DMKFTY D+ + + +
Sbjct: 212 --CGYKEPLLS----CLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRITELI 265
Query: 173 GFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC 204
G++P+ + +S ++F+HA DS ++ + +N C
Sbjct: 266 GYHPEELLGRSAYEFYHALDSENMTKSHQNLC 297
>sp|P97481|EPAS1_MOUSE Endothelial PAS domain-containing protein 1 OS=Mus musculus
GN=Epas1 PE=1 SV=2
Length = 874
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 123/212 (58%), Gaps = 46/212 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-------ANHTEDIRAQRSVFIRLKCTLTSKGRN 54
+V+L G SI++ THPCDH E++ L+ ++D+ +R F+R+KCT+T++GR
Sbjct: 123 QVELTGHSIFDFTHPCDHEEIRENLTLKNGSGFGKKSKDVSTERDFFMRMKCTVTNRGRT 182
Query: 55 VNVKAATYKVIHCTGHL-VQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPE 113
VN+K+AT+KV+HCTG + V N P P ++
Sbjct: 183 VNLKSATWKVLHCTGQVRVYNNCP---------PHSSL---------------------- 211
Query: 114 EEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFL 172
G K +++ C + + EPI HP++ D+PL S+TFL++HS+DMKFTY D+ + + +
Sbjct: 212 --CGSKEPLLS----CLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELI 265
Query: 173 GFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC 204
G++P+ + +S ++F+HA DS ++ + +N C
Sbjct: 266 GYHPEELLGRSAYEFYHALDSENMTKSHQNLC 297
>sp|Q9JHS1|EPAS1_RAT Endothelial PAS domain-containing protein 1 OS=Rattus norvegicus
GN=Epas1 PE=2 SV=1
Length = 874
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 121/212 (57%), Gaps = 46/212 (21%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-------ANHTEDIRAQRSVFIRLKCTLTSKGRN 54
+V+L G SI++ THPCDH E++ L+ +D +R F+R+KCT+T++GR
Sbjct: 123 QVELTGHSIFDFTHPCDHEEIRENLTLKTGSGFGKKNKDRSTERDFFMRMKCTVTNRGRT 182
Query: 55 VNVKAATYKVIHCTGHL-VQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPE 113
VN+K+AT+KV+HCTG + V N P P ++
Sbjct: 183 VNLKSATWKVLHCTGQVRVYNNCP---------PHSSL---------------------- 211
Query: 114 EEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFL 172
G K +++ C + + EPI HP++ D+PL S+TFL++HS+DMKFTY D+ + + +
Sbjct: 212 --CGYKEPLLS----CLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELV 265
Query: 173 GFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC 204
G++P+ + +S ++F+HA DS ++ + +N C
Sbjct: 266 GYHPEELLGRSAYEFYHALDSENMTKSHQNLC 297
>sp|Q9Y2N7|HIF3A_HUMAN Hypoxia-inducible factor 3-alpha OS=Homo sapiens GN=HIF3A PE=1 SV=2
Length = 669
Score = 122 bits (307), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/198 (35%), Positives = 105/198 (53%), Gaps = 41/198 (20%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANHTEDIR-----AQRSVFIRLKCTLTSKGRNVN 56
+++L+G SI++ HPCD E++ L+ T R +R +R+K TLTS+GR +N
Sbjct: 121 QLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRGRTLN 180
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+KAAT+KV++C+GH+ + PA GS DSEP
Sbjct: 181 LKAATWKVLNCSGHMRAYKPPAQTSPA-----------------GSP-----DSEP---- 214
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPLSQ-TFLTKHSLDMKFTYADETMEDFLGFN 175
P C V I E IPHP + + PL + FL++HSLDMKFTY D+ + + G++
Sbjct: 215 ---------PLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYS 265
Query: 176 PDIFIAKSVFDFHHAQDS 193
PD I S +++ HA DS
Sbjct: 266 PDDLIGCSAYEYIHALDS 283
>sp|Q0VBL6|HIF3A_MOUSE Hypoxia-inducible factor 3-alpha OS=Mus musculus GN=Hif3a PE=1 SV=2
Length = 662
Score = 121 bits (303), Expect = 4e-27, Method: Composition-based stats.
Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 41/198 (20%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+++L+G SI++ HPCD E++ L+ + + +R +R+K TLTS+GR +N
Sbjct: 119 QLELIGHSIFDFIHPCDQEELQDALTPRPNLSKKKLEAPTERHFSLRMKSTLTSRGRTLN 178
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+KAAT+KV+HC+GH+ + PA S P+ SEP
Sbjct: 179 LKAATWKVLHCSGHMRAYKPPAQT-SPAGSPR---------------------SEP---- 212
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPLSQ-TFLTKHSLDMKFTYADETMEDFLGFN 175
P C V I E IPHPA+ + PL + FL++HSLDMKFTY DE + + G++
Sbjct: 213 ---------PLQCLVLICEAIPHPASLEPPLGRGAFLSRHSLDMKFTYCDERIAEVAGYS 263
Query: 176 PDIFIAKSVFDFHHAQDS 193
PD I S +++ HA DS
Sbjct: 264 PDDLIGCSAYEYIHALDS 281
>sp|Q9JHS2|HIF3A_RAT Hypoxia-inducible factor 3-alpha OS=Rattus norvegicus GN=Hif3a PE=1
SV=1
Length = 662
Score = 120 bits (300), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/198 (35%), Positives = 105/198 (53%), Gaps = 41/198 (20%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----ANHTEDIRAQRSVFIRLKCTLTSKGRNVN 56
+++L+G SI++ HPCD E++ L+ + + R +R+K TLTS+GR +N
Sbjct: 119 QLELIGHSIFDFIHPCDQEELQDALTPRPSLSKKKSEAATGRHFSLRMKSTLTSRGRALN 178
Query: 57 VKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEV 116
+KAAT+KV+HC+GH+ + PA S P+ SEP
Sbjct: 179 LKAATWKVLHCSGHMRAYKPPAQT-SPAGSPR---------------------SEP---- 212
Query: 117 GEKRRVVTEPSHCFVAIGEPIPHPANYDVPLSQ-TFLTKHSLDMKFTYADETMEDFLGFN 175
P C V I E IPHPA+ + PL + FL++HSLDMKFTY DE + + G++
Sbjct: 213 ---------PLQCLVLICEAIPHPASLEPPLGRGAFLSRHSLDMKFTYCDERIAEVAGYS 263
Query: 176 PDIFIAKSVFDFHHAQDS 193
PD I S +++ HA DS
Sbjct: 264 PDDLIGCSAYEYIHALDS 281
>sp|Q9I8A9|HIF1A_XENLA Hypoxia-inducible factor 1-alpha OS=Xenopus laevis GN=hif1a PE=2
SV=1
Length = 805
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 54/207 (26%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-----------ANHTEDIRAQRSVFIRLKCTLTS 50
+ +L G S+++ THPCDH E++ +L+ NH E ++I
Sbjct: 124 QFELTGHSVFDFTHPCDHEELREMLTFRNGPAKKRKRTNHREKFLPSYEMYI-------- 175
Query: 51 KGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDS 110
N + K YKV H G +L I + ++N
Sbjct: 176 ---NQSWKNREYKVSHM------------EGPSLYRTHACIYDNANN------------- 207
Query: 111 EPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETME 169
+ G K+ P C V I EPIPHP+N + PL S+TFL++HSLDMKF+Y DE +
Sbjct: 208 --QNHCGYKK----PPMTCMVVICEPIPHPSNIEFPLDSKTFLSRHSLDMKFSYCDERVT 261
Query: 170 DFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ +G+ PD + +SV++++HA DS H+
Sbjct: 262 ELVGYEPDELLGRSVYEYYHALDSDHL 288
>sp|A2T6X9|SIM1_PANTR Single-minded homolog 1 OS=Pan troglodytes GN=SIM1 PE=3 SV=1
Length = 766
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 47/205 (22%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANH------TEDIRAQRSVFIRLKCTLTSKGRNV 55
+V+L G SIYE HP DH E+ ++L+A+ ++ +RS F+R+KC L RN
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFLRMKCVLAK--RNA 173
Query: 56 NVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEE 115
+ YKVIHC+G+L Q S M P D +
Sbjct: 174 GLTCGGYKVIHCSGYLKIRQY-----SLDMSPFDGC---------------------YQN 207
Query: 116 VGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGF 174
VG VA+G +P A ++ L S F+ + SLDMK + D + + G+
Sbjct: 208 VG------------LVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGY 255
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNA 199
P I K+++ H D+FH++ A
Sbjct: 256 EPQDLIEKTLYHHVHGCDTFHLRCA 280
>sp|A1YFY6|SIM1_PANPA Single-minded homolog 1 OS=Pan paniscus GN=SIM1 PE=3 SV=1
Length = 766
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 47/205 (22%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANH------TEDIRAQRSVFIRLKCTLTSKGRNV 55
+V+L G SIYE HP DH E+ ++L+A+ ++ +RS F+R+KC L RN
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFLRMKCVLAK--RNA 173
Query: 56 NVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEE 115
+ YKVIHC+G+L Q S M P D +
Sbjct: 174 GLTCGGYKVIHCSGYLKIRQY-----SLDMSPFDGC---------------------YQN 207
Query: 116 VGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGF 174
VG VA+G +P A ++ L S F+ + SLDMK + D + + G+
Sbjct: 208 VG------------LVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGY 255
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNA 199
P I K+++ H D+FH++ A
Sbjct: 256 EPQDLIEKTLYHHVHGCDTFHLRCA 280
>sp|P81133|SIM1_HUMAN Single-minded homolog 1 OS=Homo sapiens GN=SIM1 PE=2 SV=2
Length = 766
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 47/205 (22%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANH------TEDIRAQRSVFIRLKCTLTSKGRNV 55
+V+L G SIYE HP DH E+ ++L+A+ ++ +RS F+R+KC L RN
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFLRMKCVLAK--RNA 173
Query: 56 NVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEE 115
+ YKVIHC+G+L Q S M P D +
Sbjct: 174 GLTCGGYKVIHCSGYLKIRQY-----SLDMSPFDGC---------------------YQN 207
Query: 116 VGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGF 174
VG VA+G +P A ++ L S F+ + SLDMK + D + + G+
Sbjct: 208 VG------------LVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGY 255
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNA 199
P I K+++ H D+FH++ A
Sbjct: 256 EPQDLIEKTLYHHVHGCDTFHLRCA 280
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=Sim1 PE=1 SV=3
Length = 765
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 47/205 (22%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANH------TEDIRAQRSVFIRLKCTLTSKGRNV 55
+V+L G SIYE HP DH E+ ++L+A+ ++ +RS F+R+KC L RN
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFLRMKCVLAK--RNA 173
Query: 56 NVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEE 115
+ YKVIHC+G+L Q S M P D +
Sbjct: 174 GLTCGGYKVIHCSGYLKIRQY-----SLDMSPFDGC---------------------YQN 207
Query: 116 VGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGF 174
VG VA+G +P A ++ L S F+ + SLDMK + D + + G+
Sbjct: 208 VG------------LVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGY 255
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNA 199
P I K+++ H D+FH++ A
Sbjct: 256 EPQDLIEKTLYHHVHGCDTFHLRCA 280
>sp|Q98SJ5|SIM1A_DANRE Single-minded homolog 1-A OS=Danio rerio GN=sim1a PE=2 SV=1
Length = 745
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 47/203 (23%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANH------TEDIRAQRSVFIRLKCTLTSKGRNVNV 57
+L G SIYE HP DH E+ ++L+A+ + +RS F+R+KC L N +
Sbjct: 118 ELTGNSIYEYIHPADHDEMTAVLTAHQPYHSHFVHEYEMERSFFLRMKCVLAKA--NAGL 175
Query: 58 KAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVG 117
YKVIHC+G+L Q S M P D + VG
Sbjct: 176 TCGGYKVIHCSGYLKIRQY-----SLDMSPFDGC---------------------YQNVG 209
Query: 118 EKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFNP 176
VA+G +P A ++ L S F+ + SLDMK + D + + G+ P
Sbjct: 210 ------------LVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEP 257
Query: 177 DIFIAKSVFDFHHAQDSFHIQNA 199
I K+++ H+ D+FH++ A
Sbjct: 258 QDLIEKTLYHHVHSCDTFHLRCA 280
>sp|Q14190|SIM2_HUMAN Single-minded homolog 2 OS=Homo sapiens GN=SIM2 PE=1 SV=2
Length = 667
Score = 81.3 bits (199), Expect = 4e-15, Method: Composition-based stats.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 47/205 (22%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANHT------EDIRAQRSVFIRLKCTLTSKGRNV 55
+V+L G SIYE HP DH E+ ++L+A+ ++ +RS F+R+KC L RN
Sbjct: 116 QVELTGNSIYEYIHPSDHDEMTAVLTAHQPLHHHLLQEYEIERSFFLRMKCVLAK--RNA 173
Query: 56 NVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEE 115
+ + YKVIHC+G+L Q D + S Q
Sbjct: 174 GLTCSGYKVIHCSGYLKIRQY-----------------MLDMSLYDSCYQI--------- 207
Query: 116 VGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGF 174
VG VA+G+ +P A ++ L S F+ + SLD+K + D + + G+
Sbjct: 208 VG------------LVAVGQSLPPSAITEIKLYSNMFMFRASLDLKLIFLDSRVTEVTGY 255
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNA 199
P I K+++ H D FH++ A
Sbjct: 256 EPQDLIEKTLYHHVHGCDVFHLRYA 280
>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 OS=Mus musculus GN=Sim2 PE=1 SV=1
Length = 657
Score = 80.9 bits (198), Expect = 6e-15, Method: Composition-based stats.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 47/205 (22%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANHT------EDIRAQRSVFIRLKCTLTSKGRNV 55
+V+L G SIYE HP DH E+ ++L+A+ ++ +RS F+R+KC L RN
Sbjct: 116 QVELTGNSIYEYIHPSDHDEMTAVLTAHPPLHHHLLQEYEIERSFFLRMKCVLAK--RNA 173
Query: 56 NVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEE 115
+ + YKVIHC+G+L Q D + S Q
Sbjct: 174 GLTCSGYKVIHCSGYLKIRQY-----------------MLDMSLYDSCYQI--------- 207
Query: 116 VGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGF 174
VG VA+G+ +P A ++ L S F+ + SLD+K + D + + G+
Sbjct: 208 VG------------LVAVGQSLPPSAITEIKLHSNMFMFRASLDLKLIFLDSRVTELTGY 255
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNA 199
P I K+++ H D+FH++ A
Sbjct: 256 EPQDLIEKTLYHHVHGCDTFHLRYA 280
>sp|P05709|SIM_DROME Protein single-minded OS=Drosophila melanogaster GN=sim PE=1 SV=3
Length = 697
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 76/225 (33%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS---------------------------------A 28
+V+L G SI+E H D E+ +ILS
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 29 NHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
+HT +I +++ F+R+KC L RN + + +KVIHC+G+L P
Sbjct: 199 SHTIEI--EKTFFLRMKCVLAK--RNAGLTTSGFKVIHCSGYLKARIYP----------- 243
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPLS 148
++ D +GS IQ+ VA+G +P A ++ L
Sbjct: 244 ----DRGDG--QGSLIQNLG---------------------LVAVGHSLPSSAITEIKLH 276
Query: 149 Q-TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
Q F+ + LDMK + D + G+ P I K+++ + HA D
Sbjct: 277 QNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIHAAD 321
>sp|Q9QZQ0|NPAS3_MOUSE Neuronal PAS domain-containing protein 3 OS=Mus musculus GN=Npas3
PE=2 SV=1
Length = 925
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 82/231 (35%)
Query: 2 KVDLMGQSIYEVTHPCDHSEV-----------KSILSANHTEDIRA-------------- 36
+V+L G S+++ HP DH E+ + +LS TED +
Sbjct: 191 QVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPV 250
Query: 37 --------------QRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGS 82
+RS FIR+K TLT +G V++K++ YKVIH TG L + + P S+G
Sbjct: 251 ETTSPSLLTTDNTLERSFFIRMKSTLTKRG--VHIKSSGYKVIHITGRL-RLRVPLSHGR 307
Query: 83 TLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPAN 142
T+ P + +G V + +P P
Sbjct: 308 TV---------------------------PSQIMG------------LVVVAHALPPPTI 328
Query: 143 YDVPLS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
+V + F+T+ ++D+ Y + + D++ P + K + F HA+D
Sbjct: 329 NEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAED 379
>sp|Q8QGQ7|BMAL2_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Gallus gallus GN=ARNTL2 PE=1 SV=1
Length = 622
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 77/240 (32%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSAN-----------------HTE--------DIRA 36
+ L+GQS+++ HP D ++VK LS++ HT+ + A
Sbjct: 204 QTSLIGQSLFDYLHPKDVAKVKEQLSSSDVSPREKLVDGKTGLQVHTDFQAGPARLNSGA 263
Query: 37 QRSVFIRLKCTLTSKGRNV----NVKAA---TYKVIHCTGHLVQNQTPASNGSTLMEPQD 89
+RS F R+KC+ T+ N K Y IHCTG++ +N P+ G +E ++
Sbjct: 264 RRSFFCRIKCSRTTVKEEKECLPNPKKKDHRKYCTIHCTGYM-KNWPPSEVG---VEEEN 319
Query: 90 NIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-- 147
++E S N +C VAIG HP Y VP
Sbjct: 320 DVEKNSSNF-----------------------------NCLVAIGRL--HP--YIVPQKS 346
Query: 148 ------SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201
+ F+T+ ++D KF Y D+ LG+ P + S +++ H D H+ K
Sbjct: 347 GEIKVKATEFVTRFAMDGKFVYVDQRATAILGYLPQELLGTSCYEYCHQDDHNHLAEKHK 406
>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog
OS=Drosophila melanogaster GN=tgo PE=1 SV=3
Length = 642
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 77/241 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTED------------------------IRAQRS 39
D G S+YE HP D +++ LS +++ + A+R
Sbjct: 127 DWYGTSLYEHIHPDDREKIREQLSTQESQNAGRILDLKSGTVKKEGHQSSMRLSMGARRG 186
Query: 40 VFIRLKC------TLTS------KGRNV---NVKAATYKVIHCTGHLVQNQTPASNGSTL 84
R++ ++ S K RN + Y V+HCTG+ ++N P T
Sbjct: 187 FICRMRVGNVNPESMVSGHLNRLKQRNSLGPSRDGTNYAVVHCTGY-IKNWPP-----TD 240
Query: 85 MEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHC-FVAIGE-PIPHPAN 142
M P ++E +D DD SHC VAIG + A
Sbjct: 241 MFPNMHME------------RDVDDMS---------------SHCCLVAIGRLQVTSTAA 273
Query: 143 YDVPLSQT---FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNA 199
D+ S F+T+H++D KFT+ D+ + + LG+ P + K +DF H +D H++ +
Sbjct: 274 NDMSGSNNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKES 333
Query: 200 F 200
F
Sbjct: 334 F 334
>sp|Q8IXF0|NPAS3_HUMAN Neuronal PAS domain-containing protein 3 OS=Homo sapiens GN=NPAS3
PE=2 SV=1
Length = 933
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 82/231 (35%)
Query: 2 KVDLMGQSIYEVTHPCDHSEV-----------KSILSANHTEDIRA-------------- 36
+V+L G S+++ HP DH E+ + +LS ED +
Sbjct: 186 QVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPV 245
Query: 37 --------------QRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGS 82
+RS FIR+K TLT +G V++K++ YKVIH TG L + + S+G
Sbjct: 246 ESTSPSLLTTDNTLERSFFIRMKSTLTKRG--VHIKSSGYKVIHITGRL-RLRVSLSHGR 302
Query: 83 TLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPAN 142
T+ P + +G V + +P P
Sbjct: 303 TV---------------------------PSQIMG------------LVVVAHALPPPTI 323
Query: 143 YDVPLS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
+V + F+T+ ++D+ Y + + D++ P + K + F HA+D
Sbjct: 324 NEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAED 374
>sp|P97459|NPAS1_MOUSE Neuronal PAS domain-containing protein 1 OS=Mus musculus GN=Npas1
PE=1 SV=1
Length = 594
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 85/235 (36%), Gaps = 91/235 (38%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS--------------------------------AN 29
+V+L G S+++ HP DHSEV L A+
Sbjct: 174 QVELTGSSVFDYIHPGDHSEVLEQLGLRAASIGPPTPPSVSSSSSSSSSSLVDTPEIEAS 233
Query: 30 HTED---IRAQ-RSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLM 85
TE RAQ RS F+R+K TLT +G +NVKA+ YKVIH TG L
Sbjct: 234 PTEASPAFRAQERSFFVRMKSTLTKRG--LNVKASGYKVIHVTGRL-------------- 277
Query: 86 EPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDV 145
R A+ VA+G +P ++
Sbjct: 278 --------------RARAL------------------------GLVALGHTLPPAPLAEL 299
Query: 146 PL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNA 199
PL + + SL + + + D + P + +S + F H QD+ I+ +
Sbjct: 300 PLHGHMIVFRLSLGLTILACESRVSDHMDMGPSELVGRSCYQFVHGQDATRIRQS 354
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 90/233 (38%), Gaps = 73/233 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 186 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 245
Query: 39 SVFIRLKCT----------LTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
S F R+KC S ++ IH TG+L ++ P G
Sbjct: 246 SFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYL-KSWPPTKMGL------ 298
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYD 144
+DSEP+ E C VAIG +P P N +
Sbjct: 299 ------------------DEDSEPDNEGCNL--------SCLVAIGRLHSHMVPQPVNGE 332
Query: 145 VPL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ + S ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 333 IRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 385
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 72/232 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 193 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 252
Query: 39 SVFIRLKCTLTSKGRNVNVKAAT---------YKVIHCTGHLVQNQTPASNGSTLMEPQD 89
S F R+KC S A+T + IH TG+L ++ P G
Sbjct: 253 SFFCRMKCNRPSVKVEDKDFASTCSKKKDRKSFCTIHSTGYL-KSWPPTKMGL------- 304
Query: 90 NIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYDV 145
+D+EP+ E C VAIG +P PAN ++
Sbjct: 305 -----------------DEDNEPDNEGCNL--------SCLVAIGRLHSHMVPQPANGEI 339
Query: 146 PL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ S ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 340 RVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 391
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 73/233 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 186 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 245
Query: 39 SVFIRLKCT----------LTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
S F R+KC S ++ IH TG+L ++ P G
Sbjct: 246 SFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYL-KSWPPTKMGL------ 298
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYD 144
+D+EP+ E C VAIG +P P N +
Sbjct: 299 ------------------DEDNEPDNEGCNL--------SCLVAIGRLHSHVVPQPVNGE 332
Query: 145 VPL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ + S ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 333 IRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 385
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 73/233 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 193 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 252
Query: 39 SVFIRLKCT----------LTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
S F R+KC S ++ IH TG+L ++ P G
Sbjct: 253 SFFCRMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYL-KSWPPTKMGL------ 305
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYD 144
+D+EP+ E C VAIG +P P N +
Sbjct: 306 ------------------DEDNEPDNEGCNL--------SCLVAIGRLHPHVVPQPVNGE 339
Query: 145 VPLSQT-FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ + T ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 340 IRVKPTEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 392
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 73/233 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 193 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 252
Query: 39 SVFIRLKCT----------LTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
S F R+KC S ++ IH TG+L ++ P G
Sbjct: 253 SFFCRMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYL-KSWPPTKMGL------ 305
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYD 144
+D+EP+ E C VAIG +P P N +
Sbjct: 306 ------------------DEDNEPDNEGCNL--------SCLVAIGRLHPHVVPQPVNGE 339
Query: 145 VPLSQT-FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ + T ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 340 IRVKPTEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 392
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 73/233 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 186 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 245
Query: 39 SVFIRLKCT----------LTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
S F R+KC S ++ IH TG+L ++ P G
Sbjct: 246 SFFCRMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYL-KSWPPTKMGL------ 298
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYD 144
+D+EP+ E C VAIG +P P N +
Sbjct: 299 ------------------DEDNEPDNEGCNL--------SCLVAIGRLHSHVVPQPVNGE 332
Query: 145 VPL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ + S ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 333 IRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 385
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 73/233 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 186 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 245
Query: 39 SVFIRLKCT----------LTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
S F R+KC S ++ IH TG+L ++ P G
Sbjct: 246 SFFCRMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYL-KSWPPTKMGL------ 298
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYD 144
+D+EP+ E C VAIG +P P N +
Sbjct: 299 ------------------DEDNEPDNEGCNL--------SCLVAIGRLHSHVVPQPVNGE 332
Query: 145 VPL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ + S ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 333 IRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 385
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 73/233 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 186 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 245
Query: 39 SVFIRLKCT----------LTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQ 88
S F R+KC S ++ IH TG+L ++ P G L E
Sbjct: 246 SFFCRMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYL-KSWPPTKMG--LDE-- 300
Query: 89 DNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYD 144
+N++D+ G + C VAIG +P PA D
Sbjct: 301 ---DNEADS--EGCNLS-----------------------CLVAIGRLHSHVVPQPAGGD 332
Query: 145 VPLSQT-FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ + T ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 333 IKVKSTEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 385
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 72/232 (31%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE----------------DIR---------AQR 38
DL+GQS+++ HP D ++VK LS++ T DI A+R
Sbjct: 186 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARR 245
Query: 39 SVFIRLKCTLTS-KGRNVNVKAATYK--------VIHCTGHLVQNQTPASNGSTLMEPQD 89
S F R+KC S K + + + K IH TG+L ++ P G
Sbjct: 246 SFFCRMKCNRPSVKVEDKDFPSTCSKKKDRKSFCTIHSTGYL-KSWPPTKMGL------- 297
Query: 90 NIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE----PIPHPANYDV 145
+D+EP+ E C VAIG +P P N ++
Sbjct: 298 -----------------DEDNEPDNEGCNL--------SCLVAIGRLHSHVVPQPVNGEI 332
Query: 146 PL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
+ S ++++H++D KF + D+ L + P + S +++ H D H+
Sbjct: 333 RVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL 384
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 94/247 (38%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSA------NHTEDIR-------------------A 36
+ DL+GQS ++V HP D +VK LS+ D + A
Sbjct: 144 QADLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGA 203
Query: 37 QRSVFIRLKCTLTSKGRNVNVKAAT---------------------YKVIHCTGHLVQNQ 75
+RS F R+K S N +K + Y+VI CTG+L ++
Sbjct: 204 RRSFFCRMKLRTAS---NNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYL-KSW 259
Query: 76 TPASNGSTLMEPQDNIENQSDNTRRGSAIQDKD-DSEPEEEVGEKRRVVTEPSHCFVAIG 134
TP I+D+D D++ +E+ T C VAIG
Sbjct: 260 TP--------------------------IKDEDQDADSDEQ--------TTNLSCLVAIG 285
Query: 135 EPIPHPANYDVPLSQ---------TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVF 185
P+ N VP S F+++HS + KF + D+ +GF P + S +
Sbjct: 286 RIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFY 345
Query: 186 DFHHAQD 192
++ H +D
Sbjct: 346 EYFHNED 352
>sp|Q99742|NPAS1_HUMAN Neuronal PAS domain-containing protein 1 OS=Homo sapiens GN=NPAS1
PE=2 SV=2
Length = 590
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 37/105 (35%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANH-----------------------TEDIRA-- 36
+V++ G S+++ HP DHSEV L T +I A
Sbjct: 174 QVEMTGSSVFDYIHPGDHSEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADTPEIEASL 233
Query: 37 ----------QRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHL 71
+RS F+R+K TLT +G ++VKA+ YKVIH TG L
Sbjct: 234 TKVPPSSLVQERSFFVRMKSTLTKRG--LHVKASGYKVIHVTGRL 276
>sp|Q9DG12|ARNT2_DANRE Aryl hydrocarbon receptor nuclear translocator 2 OS=Danio rerio
GN=arnt2 PE=1 SV=2
Length = 737
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 39/147 (26%)
Query: 60 ATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEK 119
A Y V+HCTG+ ++ PA G I D+D E G+
Sbjct: 290 AQYSVVHCTGY-IKAWPPA----------------------GMTIPDED-----TEAGQT 321
Query: 120 RRVVTEPSHCFVAIG--EPIPHPANYD---VPLSQTFLTKHSLDMKFTYADETMEDFLGF 174
+ +C VAIG + P + D + + FL++H+ D T+ D + +G+
Sbjct: 322 SK------YCLVAIGRLQVTSSPVSMDMNGLSVPTEFLSRHNSDGIITFVDPRCINVIGY 375
Query: 175 NPDIFIAKSVFDFHHAQDSFHIQNAFK 201
P + K + +F H +D H++ +F+
Sbjct: 376 QPQDLLGKDILEFCHPEDQSHLRESFQ 402
>sp|Q78E60|ARNT2_RAT Aryl hydrocarbon receptor nuclear translocator 2 OS=Rattus
norvegicus GN=Arnt2 PE=2 SV=1
Length = 712
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 81/245 (33%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE------DIR------------------AQRS 39
+ G ++YE HP D +++ L + D++ ++RS
Sbjct: 177 EWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQSSMRMCMGSRRS 236
Query: 40 VFIRLKC--------------TLTSKGRN----VNVKAATYKVIHCTGHLVQNQTPASNG 81
R++C T+ + RN V A Y V+HCTG+ ++ PA
Sbjct: 237 FICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEAQYAVVHCTGY-IKAWPPA--- 292
Query: 82 STLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIG--EPIPH 139
G +I ++D +VG+ + +C VAIG +
Sbjct: 293 -------------------GMSIPEED-----ADVGQGSK------YCLVAIGRLQVTSS 322
Query: 140 PANYDVP---LSQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
P D+ + FL++H+ D T+ D +G+ P + K + +F H +D H+
Sbjct: 323 PVCMDMSGMSVPTEFLSRHNSDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHL 382
Query: 197 QNAFK 201
+ +F+
Sbjct: 383 RESFQ 387
>sp|Q9HBZ2|ARNT2_HUMAN Aryl hydrocarbon receptor nuclear translocator 2 OS=Homo sapiens
GN=ARNT2 PE=1 SV=2
Length = 717
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 83/246 (33%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE------DIR------------------AQRS 39
+ G ++YE HP D +++ L + D++ ++RS
Sbjct: 177 EWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQSSMRMCMGSRRS 236
Query: 40 VFIRLKC--------------TLTSKGRN----VNVKAATYKVIHCTGHLVQNQTPASNG 81
R++C T+ + RN V A Y V+HCTG+ ++ PA
Sbjct: 237 FICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEAQYAVVHCTGY-IKAWPPA--- 292
Query: 82 STLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGE------ 135
G I ++D +VG+ + +C VAIG
Sbjct: 293 -------------------GMTIPEED-----ADVGQGSK------YCLVAIGRLQVTSS 322
Query: 136 PIPHPANYDVPLSQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFH 195
P+ N + + FL++H+ D T+ D +G+ P + K + +F H +D H
Sbjct: 323 PVCMDMN-GMSVPTEFLSRHNSDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSH 381
Query: 196 IQNAFK 201
++ +F+
Sbjct: 382 LRESFQ 387
>sp|Q61324|ARNT2_MOUSE Aryl hydrocarbon receptor nuclear translocator 2 OS=Mus musculus
GN=Arnt2 PE=1 SV=2
Length = 712
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 93/245 (37%), Gaps = 81/245 (33%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTE------DIR------------------AQRS 39
+ G ++YE HP D +++ L + D++ ++RS
Sbjct: 177 EWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQSSMRMCMGSRRS 236
Query: 40 VFIRLKC--------------TLTSKGRN----VNVKAATYKVIHCTGHLVQNQTPASNG 81
R++C T+ + RN V A Y V+HCTG+ ++ PA
Sbjct: 237 FICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEAQYAVVHCTGY-IKAWPPA--- 292
Query: 82 STLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIG--EPIPH 139
G I ++D +VG+ + +C VAIG +
Sbjct: 293 -------------------GMTIPEED-----ADVGQGSK------YCLVAIGRLQVTSS 322
Query: 140 PANYD---VPLSQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
P D + + FL++H+ D T+ D +G+ P + K + +F H +D H+
Sbjct: 323 PVCMDMSGMSVPTEFLSRHNSDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHL 382
Query: 197 QNAFK 201
+ +F+
Sbjct: 383 RESFQ 387
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 69/227 (30%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSA---------------------NHTEDIR----A 36
+ L GQS+++ HP D ++VK LS+ H R +
Sbjct: 219 QASLTGQSLFDFLHPKDVAKVKEQLSSFDISPREKLIDAKTGLQVHSNLHAGRTRVYSGS 278
Query: 37 QRSVFIRLK-CTLTSK---GRNVNVKAATYK---VIHCTGHLVQNQTPASNGSTLMEPQD 89
+RS F R+K C ++ K G N K ++ IHCTG+L ++ P G ME +
Sbjct: 279 RRSFFCRIKSCKISVKEEHGCLPNSKKKEHRKFYTIHCTGYL-RSWPPNIVG---MEEER 334
Query: 90 NIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPH--PANY-DVP 146
N + + N C VAIG P+ P N ++
Sbjct: 335 NSKKDNSNFT-----------------------------CLVAIGRLQPYIVPQNSGEIN 365
Query: 147 LSQT-FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
+ T F+T+ +++ KF Y D+ LG+ P + S +++ H D
Sbjct: 366 VKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDD 412
>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus
mykiss GN=arnt PE=1 SV=1
Length = 723
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 81/245 (33%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTED------------------------IRAQRS 39
D +G S+Y+ HP D +++ LS + + + A+RS
Sbjct: 179 DWLGSSLYDQLHPDDGDKLREQLSTAESNNTGRMLDLKTGTVKKEGQQSSVRMCMGARRS 238
Query: 40 VFIRLKCT--------------LTSKGRN----VNVKAATYKVIHCTGHLVQNQTPASNG 81
R++C L S+ RN Y V+HCTG++ P +
Sbjct: 239 FICRMRCGSCPVEPMSMNRLNFLRSRNRNGLGPPKDGEPQYVVVHCTGYI--KSWPPTGV 296
Query: 82 STLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIG--EPIPH 139
+ E DNI +G + +C VAIG +
Sbjct: 297 NLTDEEADNI------------------------LGSR--------YCLVAIGRLQVTSC 324
Query: 140 PANYD---VPLSQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196
P++ D + + F+++H+ FT+ D +G+ P + K++ + H +D +
Sbjct: 325 PSDTDMNSISVPVEFISRHNCQGLFTFVDHRCMATVGYQPQELLGKNILELAHPEDQELL 384
Query: 197 QNAFK 201
+++F+
Sbjct: 385 RDSFQ 389
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 75/229 (32%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSAN-------------------HTEDIR----AQR 38
+ L+GQ++++ HP D ++VK LS + +T R ++R
Sbjct: 160 QASLIGQNLFDFLHPKDVAKVKEQLSCDGSPREKPIDTKTSQVYSHPYTGRPRMHSGSRR 219
Query: 39 SVFIRLK-CTLTSKGRNVNVKAATYK------VIHCTGHLVQNQTPASNGSTLMEPQDNI 91
S F R+K CT+ K + K +HCTG+L P N+
Sbjct: 220 SFFFRMKSCTVPVKEEQPCSSCSKKKDHRKFHTVHCTGYL--RSWPL-----------NV 266
Query: 92 ENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPLSQT- 150
+ G KD P C VA+G HP Y VP
Sbjct: 267 VGMEKESGGG-----KDSG---------------PLTCLVAMGRL--HP--YIVPQKSGK 302
Query: 151 -------FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
F+T+ +++ KF Y D+ LG+ P + S +++ H D
Sbjct: 303 INVRPAEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDD 351
>sp|Q24119|TRH_DROME Protein trachealess OS=Drosophila melanogaster GN=trh PE=1 SV=4
Length = 1022
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 84/188 (44%), Gaps = 15/188 (7%)
Query: 14 THPCDHSEVKSILSANHTEDIRA-QRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHLV 72
TH ++ +V + ++ T + RS +R+K TLT +G + K++ Y+ T +
Sbjct: 279 THGTNNPDVAASMTQASTSGYKGYDRSFCVRMKSTLTKRG--CHFKSSGYRASDATSNCN 336
Query: 73 QNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVA 132
++N + P N S + P+ R+ P VA
Sbjct: 337 NGNNASNNAKNVKNPGSNY----------SVVLLLCKLRPQYTFSHSRKS-QPPLLGMVA 385
Query: 133 IGEPIPHPANYDVPLS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQ 191
+ +P P+ +++ L F+T+ + D++ + + + D L ++P+ + KS++ HA+
Sbjct: 386 LAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKSLYSLCHAE 445
Query: 192 DSFHIQNA 199
D+ ++ +
Sbjct: 446 DANRLRKS 453
>sp|O61735|CLOCK_DROME Circadian locomoter output cycles protein kaput OS=Drosophila
melanogaster GN=Clk PE=2 SV=3
Length = 1027
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 29/199 (14%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLT-----SKGRNVNVK 58
DL +IY++ + DH + +I N T I R I +T +G V
Sbjct: 129 DLYNMTIYDLAYEMDHEALLNIF-MNPTPVIEP-RQTDISSSNQITFYTHLRRGGMEKVD 186
Query: 59 AATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGE 118
A Y+++ G+ +N T S GS+ + N S+ + + + P EV +
Sbjct: 187 ANAYELVKFVGYF-RNDTNTSTGSS-----SEVSNGSNG--QPAVLPRIFQQNPNAEVDK 238
Query: 119 KRRVVTEPSHCFVAIGEPIPHP-----ANYDVPLSQTFLTKHSLDMKFTYADETMEDFLG 173
K FV G + +P + P S F +KHS++ KF + D +G
Sbjct: 239 KL--------VFVGTGR-VQNPQLIREMSIIDPTSNEFTSKHSMEWKFLFLDHRAPPIIG 289
Query: 174 FNPDIFIAKSVFDFHHAQD 192
+ P + S +D++H D
Sbjct: 290 YMPFEVLGTSGYDYYHFDD 308
>sp|Q25637|PER_PERAM Period circadian protein OS=Periplaneta americana GN=per PE=2 SV=2
Length = 893
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 148 SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201
S F+T+H K Y D +LG+ P + SV DF+H +D ++ ++
Sbjct: 387 SPKFVTRHLATCKLNYVDPECMPYLGYLPHEMLGNSVLDFYHPEDLPFLKEVYQ 440
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,491,288
Number of Sequences: 539616
Number of extensions: 3174262
Number of successful extensions: 10363
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10071
Number of HSP's gapped (non-prelim): 237
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)