Query psy10704
Match_columns 211
No_of_seqs 144 out of 901
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 16:31:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dj2_A Period circadian protei 100.0 2.2E-32 7.5E-37 238.9 15.6 153 1-203 63-230 (320)
2 4dj3_A Period circadian protei 100.0 2E-32 7E-37 238.8 15.0 153 1-203 63-228 (317)
3 3gdi_A Period circadian protei 100.0 3.9E-32 1.3E-36 236.3 14.3 160 1-210 52-237 (309)
4 4f3l_B BMAL1B; BHLH, PAS, circ 100.0 1.3E-30 4.4E-35 232.5 14.8 177 1-210 123-349 (387)
5 4f3l_A Mclock, circadian locom 99.9 1.8E-26 6.2E-31 203.7 14.3 178 1-210 122-321 (361)
6 3rty_A Period circadian protei 99.9 9E-26 3.1E-30 198.4 17.1 161 1-204 30-209 (339)
7 1oj5_A Steroid receptor coacti 99.5 1.1E-14 3.6E-19 111.0 1.5 62 149-211 7-81 (132)
8 3f1p_A Endothelial PAS domain- 99.0 9.6E-10 3.3E-14 78.7 6.1 56 149-204 9-64 (117)
9 2vlg_A Sporulation kinase A; h 99.0 8.2E-10 2.8E-14 81.1 5.6 53 149-201 9-61 (111)
10 3f1p_B ARYL hydrocarbon recept 98.9 1.4E-09 4.6E-14 78.5 6.4 56 149-204 12-67 (121)
11 2kdk_A ARYL hydrocarbon recept 98.8 8.2E-09 2.8E-13 73.8 7.1 61 143-203 6-67 (121)
12 2vlg_A Sporulation kinase A; h 98.7 1.2E-08 4.2E-13 74.7 3.4 47 1-47 35-108 (111)
13 3gdi_A Period circadian protei 98.6 2.9E-08 1E-12 85.8 5.4 52 149-200 25-77 (309)
14 4dj3_A Period circadian protei 98.6 4.6E-08 1.6E-12 84.9 5.5 51 149-199 36-87 (317)
15 4dj2_A Period circadian protei 98.6 4.5E-08 1.5E-12 85.0 4.7 52 149-200 36-88 (320)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 7.4E-08 2.5E-12 85.3 5.6 53 149-201 96-149 (387)
17 4f3l_A Mclock, circadian locom 98.5 1E-07 3.4E-12 83.6 5.8 54 149-202 96-149 (361)
18 3rty_A Period circadian protei 98.4 1.3E-07 4.6E-12 82.6 4.9 53 149-201 3-56 (339)
19 3ewk_A Sensor protein; PAS dom 98.1 7.2E-06 2.5E-10 65.9 8.3 75 128-202 91-174 (227)
20 1d06_A Nitrogen fixation regul 97.7 4.3E-05 1.5E-09 55.2 5.3 49 150-198 27-75 (130)
21 1ll8_A PAS kinase; PAS domain, 97.7 3.4E-05 1.1E-09 54.4 4.5 45 151-195 10-55 (114)
22 3h9w_A Diguanylate cyclase wit 97.7 2.3E-05 7.8E-10 55.3 3.5 50 155-204 9-60 (115)
23 2vv6_A FIXL, sensor protein FI 97.7 5.5E-05 1.9E-09 53.7 5.4 45 152-196 6-50 (119)
24 2gj3_A Nitrogen fixation regul 97.7 5.7E-05 1.9E-09 53.8 5.3 46 150-195 16-61 (120)
25 3mjq_A Uncharacterized protein 97.5 8.4E-05 2.9E-09 52.1 4.0 54 150-203 10-63 (126)
26 2r78_A Sensor protein; sensory 97.5 9.7E-05 3.3E-09 52.7 4.3 43 150-192 22-64 (117)
27 3icy_A Sensor protein; sensory 97.5 4E-05 1.4E-09 53.3 2.1 53 152-204 17-71 (118)
28 3luq_A Sensor protein; PAS, hi 97.4 0.00011 3.8E-09 50.3 4.1 52 151-203 15-66 (114)
29 4eet_B Phototropin-2; LOV, blu 97.4 0.00017 5.9E-09 49.3 5.0 49 153-201 11-62 (115)
30 3nja_A Probable ggdef family p 97.4 0.0001 3.5E-09 51.3 3.7 54 151-204 19-74 (125)
31 3mfx_A Sensory BOX/ggdef famil 97.4 0.00013 4.4E-09 54.2 4.1 43 152-194 20-62 (129)
32 3fc7_A HTR-like protein, senso 97.4 0.00021 7.3E-09 50.1 5.0 50 149-198 29-78 (125)
33 3fg8_A Uncharacterized protein 97.3 0.00016 5.5E-09 51.6 4.0 53 150-202 23-75 (118)
34 3eeh_A Putative light and redo 97.3 0.00018 6.3E-09 49.4 4.0 53 150-202 22-77 (125)
35 2pr5_A Blue-light photorecepto 97.3 0.00029 1E-08 50.8 5.1 44 152-195 12-58 (132)
36 3mr0_A Sensory box histidine k 97.3 0.00033 1.1E-08 51.5 5.4 52 152-203 22-75 (142)
37 1n9l_A PHOT-LOV1, putative blu 97.3 0.00039 1.3E-08 48.9 5.4 36 157-192 14-49 (109)
38 3f1p_B ARYL hydrocarbon recept 97.3 0.0023 7.8E-08 45.0 9.4 58 2-71 39-96 (121)
39 3t50_A Blue-light-activated hi 97.3 0.00035 1.2E-08 49.3 4.9 50 152-201 10-62 (128)
40 4hia_A LOV protein; PAS, HTH, 97.2 0.00032 1.1E-08 52.9 4.4 49 154-202 22-73 (176)
41 3d72_A Vivid PAS protein VVD; 97.2 0.00062 2.1E-08 49.6 5.6 35 157-191 46-80 (149)
42 2wkq_A NPH1-1, RAS-related C3 97.1 0.00047 1.6E-08 58.0 5.4 53 150-202 22-77 (332)
43 3p7n_A Sensor histidine kinase 97.1 0.00059 2E-08 55.3 5.5 54 149-202 73-129 (258)
44 3olo_A Two-component sensor hi 97.1 0.00042 1.4E-08 47.9 3.9 40 152-191 26-65 (118)
45 3ue6_A Aureochrome1; PAS/LOV d 97.1 0.0006 2.1E-08 50.3 5.0 51 151-201 47-100 (166)
46 3bwl_A Sensor protein; structu 97.1 0.00073 2.5E-08 47.7 5.2 46 151-198 29-76 (126)
47 3mqq_A Transcriptional regulat 97.0 0.00053 1.8E-08 48.4 3.9 36 156-191 19-54 (120)
48 3a0s_A Sensor protein; PAS-fol 97.0 0.0017 5.7E-08 42.2 6.0 40 152-193 5-44 (96)
49 3lyx_A Sensory BOX/ggdef domai 96.9 0.0018 6E-08 43.9 6.0 53 150-202 18-70 (124)
50 2z6d_A Phototropin-2; PAS-fold 96.9 0.0015 5.2E-08 44.5 5.3 49 152-200 19-70 (130)
51 3ewk_A Sensor protein; PAS dom 96.9 0.0012 4E-08 52.7 5.2 42 152-193 2-43 (227)
52 2v0u_A NPH1-1, LOV2; kinase, t 96.8 0.0015 5E-08 45.8 4.9 50 152-201 15-67 (146)
53 3mxq_A Sensor protein; PSI2, M 96.7 0.0015 5.3E-08 50.0 4.7 54 150-204 33-86 (152)
54 1v9y_A Heme PAS sensor protein 96.6 0.0023 7.8E-08 46.8 4.4 51 150-200 51-101 (167)
55 1byw_A Protein (human ERG pota 96.5 0.0022 7.5E-08 42.4 3.9 38 157-194 12-51 (110)
56 3f1p_A Endothelial PAS domain- 96.5 0.0015 5.1E-08 45.6 2.8 56 3-71 37-92 (117)
57 3b33_A Sensor protein; structu 96.4 0.0018 6.3E-08 44.9 2.9 43 150-192 18-60 (115)
58 3k3c_A Protein RV1364C/MT1410; 96.3 0.0024 8.1E-08 47.0 3.4 52 150-203 28-80 (158)
59 2l0w_A Potassium voltage-gated 96.2 0.0073 2.5E-07 41.8 5.2 47 152-198 32-83 (138)
60 1nwz_A PYP, photoactive yellow 96.0 0.0052 1.8E-07 46.0 3.9 44 149-192 27-70 (125)
61 3sw1_A Sensory box protein; li 96.0 0.0043 1.5E-07 45.4 3.5 51 150-200 36-89 (162)
62 1mzu_A PPR; photoactive yellow 96.0 0.0062 2.1E-07 45.8 4.0 44 149-192 32-75 (129)
63 2w0n_A Sensor protein DCUS; si 95.6 0.004 1.4E-07 42.6 1.6 43 152-194 28-73 (118)
64 2jhe_A Transcription regulator 95.6 0.014 4.7E-07 44.7 4.7 48 149-196 90-137 (190)
65 3kx0_X Uncharacterized protein 95.4 0.0066 2.3E-07 46.5 2.2 44 149-194 47-91 (185)
66 4eho_A Bacteriophytochrome, PA 95.2 0.013 4.3E-07 54.9 4.0 53 151-203 530-582 (635)
67 3a0r_A Sensor protein; four he 95.1 0.0098 3.3E-07 49.9 2.6 48 149-196 18-65 (349)
68 4hi4_A Aerotaxis transducer AE 95.1 0.015 5.1E-07 41.3 3.2 38 152-189 18-67 (121)
69 2kdk_A ARYL hydrocarbon recept 94.9 0.043 1.5E-06 37.9 5.2 57 2-70 40-96 (121)
70 3h9w_A Diguanylate cyclase wit 94.7 0.037 1.3E-06 38.1 4.3 57 3-72 32-89 (115)
71 3vol_A Aerotaxis transducer AE 94.5 0.025 8.5E-07 45.7 3.4 41 149-189 32-84 (233)
72 1oj5_A Steroid receptor coacti 94.3 0.0016 5.6E-08 49.2 -3.7 56 3-71 36-93 (132)
73 2qkp_A Uncharacterized protein 94.2 0.055 1.9E-06 41.0 4.7 41 150-192 30-73 (151)
74 2ool_A Sensor protein; bacteri 92.9 0.065 2.2E-06 46.5 3.4 44 157-200 51-94 (337)
75 3icy_A Sensor protein; sensory 91.3 0.34 1.2E-05 32.5 5.0 55 4-71 43-99 (118)
76 3mr0_A Sensory box histidine k 89.7 0.64 2.2E-05 33.3 5.6 51 8-71 54-104 (142)
77 3nja_A Probable ggdef family p 88.9 0.8 2.7E-05 30.6 5.4 55 3-70 45-101 (125)
78 3cax_A Uncharacterized protein 88.2 0.55 1.9E-05 40.6 5.0 44 149-194 249-292 (369)
79 3eeh_A Putative light and redo 77.2 3.5 0.00012 26.9 4.5 53 4-70 51-105 (125)
80 4e04_A Bacteriophytochrome (li 72.1 3 0.0001 35.9 3.7 47 155-201 35-81 (327)
81 3s7o_A Bacteriophytochrome; bi 71.1 2.3 7.7E-05 36.9 2.7 42 157-199 61-102 (343)
82 3clo_A Transcriptional regulat 61.6 3.1 0.00011 33.8 1.6 47 152-198 46-101 (258)
83 2ykf_A Pdtas, probable sensor 62.2 2.2 7.4E-05 35.9 0.0 42 149-191 180-224 (305)
84 1ll8_A PAS kinase; PAS domain, 51.9 6.7 0.00023 26.1 1.8 24 1-24 35-58 (114)
85 3zq5_A Phytochrome-like protei 40.9 10 0.00034 34.6 1.6 38 157-194 38-75 (520)
86 3nhq_A Bacteriophytochrome; ph 31.0 33 0.0011 31.1 3.3 44 155-200 32-76 (505)
87 3u5c_b RP61, YS20, 40S ribosom 22.8 30 0.001 23.5 1.1 34 11-47 5-38 (82)
88 2xzm_6 RPS27E; ribosome, trans 21.5 44 0.0015 22.6 1.7 34 11-47 3-36 (81)
89 3iz6_X 40S ribosomal protein S 20.0 31 0.0011 23.6 0.8 34 11-47 7-40 (86)
No 1
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=100.00 E-value=2.2e-32 Score=238.89 Aligned_cols=153 Identities=20% Similarity=0.298 Sum_probs=117.9
Q ss_pred CCccccCCccccCCChhhHHHHHHHhcCCCC-------------CCCCCceeEEEEEeeecCCCCccccCCCCceEEEEE
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKSILSANHT-------------EDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHC 67 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~-------------~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~ 67 (211)
+|.||+|+||||||||+||++|++||++... .+.+.+|+|+|||||.+.+. +..+|++++|
T Consensus 63 ~~~~l~g~s~~d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~~~~rsF~CRmr~~l~k~------~~~~Y~~~~~ 136 (320)
T 4dj2_A 63 KRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFTQEKSVFCRIRGGPDRD------PGPRYQPFRL 136 (320)
T ss_dssp CSTTTTTSBGGGGBCHHHHHHHHHHCCTTTCCBTTC-------------CCCEEEEECCC-------------CCEEEEE
T ss_pred CHHHHcCCcHHHhcCHHHHHHHHHhhcccCCCCcccCcccccccccCCCceeEEEEEEEeccCC------CcccEEEEEE
Confidence 5899999999999999999999999987421 12246899999999986432 3578999999
Q ss_pred EEeeecCCCCCCCCCCcCCCCccccccccccccCccccCCCCCCcccccccccccccCCCceEEEEeeeCCCC-CCCCCC
Q psy10704 68 TGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHP-ANYDVP 146 (211)
Q Consensus 68 ~G~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Lv~i~r~~~~~-~~~e~~ 146 (211)
+|+++.+... .|. .+..++++++.++.++ +..+++
T Consensus 137 ~g~lk~~~~~--------------------------------------~g~------~~~~~~li~a~~~~s~~~~~~i~ 172 (320)
T 4dj2_A 137 TPYVTKIRVS--------------------------------------DGA------PAQPCCLLIAERIHSGYEAPRIP 172 (320)
T ss_dssp EEEEEEECC-----------------------------------------C------CCEEEEEEEEEECCCSSSSSCCC
T ss_pred EEEecccccC--------------------------------------CCC------cccceeeeeeeeccCcccccccc
Confidence 9999876431 010 0223555567777654 455565
Q ss_pred CC-ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh
Q psy10704 147 LS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 147 ~~-~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l 203 (211)
.+ ..|++||++||+|+|||+++..+|||.|+||+|+++|+|+||+|++.+.+.|+.+
T Consensus 173 ~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~ 230 (320)
T 4dj2_A 173 PDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKI 230 (320)
T ss_dssp GGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHH
T ss_pred CCCceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHH
Confidence 55 8999999999999999999999999999999999999999999999999998754
No 2
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=100.00 E-value=2e-32 Score=238.81 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=123.4
Q ss_pred CCccccCCccccCCChhhHHHHHHHhcCCC-CC-----------CCCCceeEEEEEeeecCCCCccccCCCCceEEEEEE
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKSILSANH-TE-----------DIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCT 68 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~-~~-----------~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~ 68 (211)
.|.||+|+||||||||+||++|++||.... +. +.+.+|+|+|||||+.. .+..+|+++||+
T Consensus 63 ~~~el~g~s~~d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~~~rsF~CRmr~g~~-------~~~~~y~~~~~~ 135 (317)
T 4dj3_A 63 KRGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAPAKPFFCRICGGGD-------REKRHYSPFRIL 135 (317)
T ss_dssp CHHHHHTSBGGGGBCGGGHHHHHHHTCTTTCCCCC----------CCCCCCEEEEECCCCC-------SSSCCCEEEEEE
T ss_pred CHHHHcCCchhhhcChhhHHHHHHhhcccCCCCcCCCcccccccCCCCCceEEEEEeCCCC-------CCCCceEEEEEE
Confidence 478999999999999999999999984321 10 23578999999999642 356799999999
Q ss_pred EeeecCCCCCCCCCCcCCCCccccccccccccCccccCCCCCCcccccccccccccCCCceEEEEeeeCCCCCCCCCCCC
Q psy10704 69 GHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPLS 148 (211)
Q Consensus 69 G~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Lv~i~r~~~~~~~~e~~~~ 148 (211)
|+++.+.... .. .....|||++++..++....+.++.
T Consensus 136 g~l~~~~~~~-------------------------~~------------------~~~~~clv~v~~~~~~~~~~~~~~~ 172 (317)
T 4dj3_A 136 PYLVHVHSSA-------------------------QP------------------EPEPCCLTLVEKIHSGYEAPRIPVD 172 (317)
T ss_dssp EEEEECCCCS-------------------------SS------------------CSCEEEEEEEEECCCTTSSSCCCGG
T ss_pred eEEEeccCCC-------------------------CC------------------CCCceEEEEEEecCCCcCCCCcccC
Confidence 9999876420 00 0123689998877765544444444
Q ss_pred -ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh
Q psy10704 149 -QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 149 -~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l 203 (211)
..|++||++||+|+|||+++..+|||.|+||+|+++|+|+||+|++.+.+.|+.+
T Consensus 173 ~~~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~ 228 (317)
T 4dj3_A 173 KRIFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKV 228 (317)
T ss_dssp GCEEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHH
T ss_pred CCceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999888754
No 3
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.98 E-value=3.9e-32 Score=236.27 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=117.1
Q ss_pred CCccccCCccccCCChhhHHHHHHHhcCCCC-C------------CCCCceeEEEEEeeecCCCCccccCCCCceEEEEE
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKSILSANHT-E------------DIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHC 67 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~-~------------~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~ 67 (211)
+|.||+|+||||||||+||++|+++|++... . +...+|+|+|||||+.. +.+..+|+++||
T Consensus 52 ~~~el~g~s~~d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~~~~~rsF~CRmr~~~~------~~~~~~Y~~~~~ 125 (309)
T 3gdi_A 52 KKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQECMEEKSFFCRVSVGKH------HENEIRYQPFRM 125 (309)
T ss_dssp -----CCSBGGGGBCTTTHHHHHHHTCTTSSCBCC--------------CCCEEEEECCCC----------CCCCEEEEE
T ss_pred CHHHHcCCchhhccCHhHHHHHHHhccccCCCCcccccCccccccccCCceeEEEEEEcccc------CCCccceEEEEE
Confidence 4889999999999999999999999975211 0 11247999999998732 224689999999
Q ss_pred EEeeecCCCCCCCCCCcCCCCccccccccccccCccccCCCCCCcccccccccccccCCCceEEEEeeeCCCC-CCCCCC
Q psy10704 68 TGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHP-ANYDVP 146 (211)
Q Consensus 68 ~G~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Lv~i~r~~~~~-~~~e~~ 146 (211)
+|+++...+. .|. ....|||++++++.+. +....+
T Consensus 126 ~g~lk~~~~~--------------------------------------~g~------~~~~~lv~~a~~~~s~~~~p~~~ 161 (309)
T 3gdi_A 126 TPYLVKVQEQ--------------------------------------QGA------ESQLCCLLLAERVHSGYEAPRIP 161 (309)
T ss_dssp EEEEEECC----------------------------------------------------EEEEEEEEECCCTTSSSCCC
T ss_pred EeeeccccCC--------------------------------------CCC------cCccEEEEEEEecCCCccCCCcC
Confidence 9999865432 010 1246777778877643 222223
Q ss_pred CC-ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh-----------hhhcccC
Q psy10704 147 LS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP-----------CYSCVIK 210 (211)
Q Consensus 147 ~~-~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l-----------~~rf~~k 210 (211)
.. ..|++||++||+|+|||+++..+|||.|+||+|+++|+|+||+|++.+.+.|+.+ .|||+.|
T Consensus 162 ~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~k 237 (309)
T 3gdi_A 162 PEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTR 237 (309)
T ss_dssp GGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECT
T ss_pred CCCceEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEcc
Confidence 33 6899999999999999999999999999999999999999999999999988753 4777766
No 4
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.97 E-value=1.3e-30 Score=232.53 Aligned_cols=177 Identities=30% Similarity=0.552 Sum_probs=127.8
Q ss_pred CCccccCCccccCCChhhHHHHHHHhcCCCCC-------------------------CCCCceeEEEEEeeecCCCCcc-
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKSILSANHTE-------------------------DIRAQRSVFIRLKCTLTSKGRN- 54 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~~-------------------------~~~~~rsF~cRmk~~~~~r~~~- 54 (211)
+|.||+|+++||||||+|+++|+++|...... ..+.+|+|+|||||....+...
T Consensus 123 ~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~ 202 (387)
T 4f3l_B 123 SQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVED 202 (387)
T ss_dssp CHHHHTTSBGGGGBCGGGHHHHHHHHSCC--------------------------CCCGGGEEEEEEEEECSCC------
T ss_pred CHHHHCCCcHHHhcCCCCHHHHHHHhcccccCccccccCcccCCccCCCCCCcccccccCCceeEEEeeecccCCccccc
Confidence 47899999999999999999999999765410 0256799999999987532210
Q ss_pred ------c---cCCCCceEEEEEEEeeecCCCCCCCCCCcCCCCccccccccccccCccccCCCCCCcccccccccccccC
Q psy10704 55 ------V---NVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTE 125 (211)
Q Consensus 55 ------~---~~~~~~y~~v~~~G~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 125 (211)
. +.+..+|++++|+|+++.|++.. .+ +.+.. +.. + ..+
T Consensus 203 ~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~-~~----------------------~~~~~--~~~---~-----~~~ 249 (387)
T 4f3l_B 203 KDFASTCSKKKADRKSFCTIHSTGYLKSWPPTK-MG----------------------LDEDN--EPD---N-----EGC 249 (387)
T ss_dssp -------------CCSEEEEEEEEEEEC----------------------------------------------------
T ss_pred ccccccccccccCCCceEEEEEEEEEecccccc-cc----------------------ccccc--ccc---c-----CCC
Confidence 0 11578999999999999987531 00 00000 000 0 012
Q ss_pred CCceEEEEeeeCCC----CCCCCCCCC-ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHH
Q psy10704 126 PSHCFVAIGEPIPH----PANYDVPLS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAF 200 (211)
Q Consensus 126 ~~~~Lv~i~r~~~~----~~~~e~~~~-~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h 200 (211)
...||||++++++. +...|+... ..|+++|++||+|+|||+++..+|||.|+||+|+++|+|+||+|++.+.+.|
T Consensus 250 ~~~~lvai~r~~~~~~~~~~~~ei~~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~ 329 (387)
T 4f3l_B 250 NLSCLVAIGRLHSHMVPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECH 329 (387)
T ss_dssp CCCEEEEEEEECCCSCCSCCCSSSCBCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHH
T ss_pred cceEEEEEEecccCCCCCCcccccccCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHH
Confidence 45799999999654 335566555 8999999999999999999999999999999999999999999999999988
Q ss_pred Hhh----------hhhcccC
Q psy10704 201 KNP----------CYSCVIK 210 (211)
Q Consensus 201 ~~l----------~~rf~~k 210 (211)
..+ .|||+.|
T Consensus 330 ~~~l~~~~~~~~~eyR~~~k 349 (387)
T 4f3l_B 330 RQVLQTREKITTNCYKFKIK 349 (387)
T ss_dssp HHHTTCSSCEECCCEEEECT
T ss_pred HHHHhcCCCeeeEEEEEEcc
Confidence 754 4677665
No 5
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.94 E-value=1.8e-26 Score=203.69 Aligned_cols=178 Identities=24% Similarity=0.358 Sum_probs=129.3
Q ss_pred CCccccCCccccCCChhhHHHHHHHhcCCCCC---------CCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEee
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKSILSANHTE---------DIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHL 71 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~~---------~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~l 71 (211)
+|.||+|++++|||||+|++.++++|...... .....++|+|||++.... .....+|++++|+|++
T Consensus 122 ~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~cr~~~~~~~-----~~~~~~y~~i~~~G~~ 196 (361)
T 4f3l_A 122 LPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTID-----PKEPSTYEYVRFIGNF 196 (361)
T ss_dssp CHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGGEEEEEEEEECCCSC-----SSSCCCEEEEEEEEEE
T ss_pred CHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCcccccccCceeEEEEEeccCCC-----CCCCCceEEEEEEEEE
Confidence 46899999999999999999999999865421 123578999999977532 1236789999999999
Q ss_pred ecCCCCCCCCCCcCCCCccccccccccccCccccCCCCCCcccccccccccccCCCceEEEEeeeCCCCCCCCC---CCC
Q psy10704 72 VQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDV---PLS 148 (211)
Q Consensus 72 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Lv~i~r~~~~~~~~e~---~~~ 148 (211)
+.+..... .. ..+.. ..++... .....+..||||++|+++++...|. ...
T Consensus 197 ~~~~~~~~--~~----~~g~~---------~~~~~~~------------~~~~~~~~~lvai~r~~~~~~~~e~~~i~~~ 249 (361)
T 4f3l_A 197 KSLTSVST--ST----HNGFE---------GTIQRTH------------RPSYEDRVCFVATVRLATPQFIKEMCTVEEP 249 (361)
T ss_dssp EECC---------------------------------------------------CEEEEEEEEESSCCSSEEECSCSSS
T ss_pred EeccCCCc--cc----ccCcc---------ccccccc------------CccCCCceEEEEEEecCCCCcccccccccCC
Confidence 98754200 00 00000 0000000 0011246899999999987655442 233
Q ss_pred -ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhhh---------hhcccC
Q psy10704 149 -QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC---------YSCVIK 210 (211)
Q Consensus 149 -~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l~---------~rf~~k 210 (211)
..|+++|++||+|+|||+++..+|||.|+||+|+++|+|+||+|++.+.++|..++ |||+.|
T Consensus 250 ~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~k 321 (361)
T 4f3l_A 250 NEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTK 321 (361)
T ss_dssp CCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECT
T ss_pred cceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEec
Confidence 79999999999999999999999999999999999999999999999999888753 677665
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.94 E-value=9e-26 Score=198.44 Aligned_cols=161 Identities=17% Similarity=0.250 Sum_probs=109.5
Q ss_pred CCccccCCccccCCChhhHHHHHHHhcCCCCC------CCCCceeEEEEEeeecCCCCccccCCCCceEEE---------
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKSILSANHTE------DIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVI--------- 65 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~~------~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v--------- 65 (211)
+|.||+|+++||||||+|+++|+++|..+.+. ..+.+|+|||||++... .+++++|++.
T Consensus 30 ~~~el~G~s~~d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~~------~l~s~gy~v~~~~~~~~p~ 103 (339)
T 3rty_A 30 PRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYR------GLKSGGFGVIGRPVSYEPF 103 (339)
T ss_dssp CTTSSTTSBGGGGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECCC-------------------CCEEEE
T ss_pred CHHHHCCCcHHHhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEeccC------CCCcCCcceecccccceeE
Confidence 58899999999999999999999999887542 12456899999986421 2334455554
Q ss_pred EEEEeeecCCCCCCCCCCcCCCCccccccccccccCccccCCCCCCcccccccccccccCCCceEEEEeeeCCCCCCC--
Q psy10704 66 HCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANY-- 143 (211)
Q Consensus 66 ~~~G~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Lv~i~r~~~~~~~~-- 143 (211)
.+..+++.... +. ++ .+. ........+||++|.|++++...
T Consensus 104 ~l~~~~~~~~~------------------------------e~--~~---~~~--~~~~g~~~~lv~~a~~i~s~~~~p~ 146 (339)
T 3rty_A 104 RLGLTFREAPE------------------------------EA--RP---DNY--MVSNGTNMLLVICATPIKSSYKVPD 146 (339)
T ss_dssp EEEEEEEECCC------------------------------C-----------------CCCEEEEEEEEECCCSCSSTT
T ss_pred EEEEEEecccc------------------------------cc--cc---ccc--cccCCceEEEEEEcccCCccccccc
Confidence 33333332111 00 00 000 00012457899999999865322
Q ss_pred CC-CCC-ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhhh
Q psy10704 144 DV-PLS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC 204 (211)
Q Consensus 144 e~-~~~-~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l~ 204 (211)
|+ ... ..|++||++||+|+|||+++..+|||.|+||+|+++++|+||+|++.+.+.|..++
T Consensus 147 e~~~~~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l 209 (339)
T 3rty_A 147 EILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVM 209 (339)
T ss_dssp BBCCSSCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHH
T ss_pred hhhccCCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHH
Confidence 32 224 89999999999999999999999999999999999999999999999998887654
No 7
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.45 E-value=1.1e-14 Score=110.97 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=54.9
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCCh--hhhcCCCccceecccCHH--HHHHHHHhh---------hhhcccCC
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNP--DIFIAKSVFDFHHAQDSF--HIQNAFKNP---------CYSCVIKS 211 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~--~el~G~s~y~~vH~~D~~--~~~~~h~~l---------~~rf~~k~ 211 (211)
..|++||++||||++||.++. ..+|.+ +||+|+++|+|+|++|.+ .+.+.|+++ +|||+.|.
T Consensus 7 e~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~ 81 (132)
T 1oj5_A 7 ESFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILND 81 (132)
T ss_dssp CEEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTT
T ss_pred eeeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecC
Confidence 789999999999999999876 577777 999999999999999977 888888865 69998873
No 8
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.96 E-value=9.6e-10 Score=78.67 Aligned_cols=56 Identities=39% Similarity=0.886 Sum_probs=52.2
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhhh
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC 204 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l~ 204 (211)
..|+.++++||+|+++|+++..++||.++||+|+++++++||+|.+.+.+.+..++
T Consensus 9 ~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~ 64 (117)
T 3f1p_A 9 KTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLC 64 (117)
T ss_dssp GEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHH
T ss_pred ccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999998888877653
No 9
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.95 E-value=8.2e-10 Score=81.15 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=49.1
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
..|+..++.+|+|+|+++++..+|||.++||+|+++++|+||+|.+.+.+.+.
T Consensus 9 ~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~ 61 (111)
T 2vlg_A 9 TDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY 61 (111)
T ss_dssp CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred CCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh
Confidence 56778889999999999999999999999999999999999999999887664
No 10
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.94 E-value=1.4e-09 Score=78.49 Aligned_cols=56 Identities=21% Similarity=0.592 Sum_probs=52.2
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhhh
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC 204 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l~ 204 (211)
..++.++++||+|+|+|+++..++||.++||+|+++++++||+|.+.+.+.+...+
T Consensus 12 ~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~ 67 (121)
T 3f1p_B 12 TRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVV 67 (121)
T ss_dssp CEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHT
T ss_pred CceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999888877654
No 11
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.83 E-value=8.2e-09 Score=73.84 Aligned_cols=61 Identities=21% Similarity=0.532 Sum_probs=53.1
Q ss_pred CCCCCC-ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh
Q psy10704 143 YDVPLS-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 143 ~e~~~~-~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l 203 (211)
.++... ..++..++++|+|+++++++..++||.++|++|+++++++||+|.+.+.+.+...
T Consensus 6 ~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~ 67 (121)
T 2kdk_A 6 GEINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAV 67 (121)
T ss_dssp TCCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHH
T ss_pred cccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHH
Confidence 344334 7888999999999999999999999999999999999999999999887776654
No 12
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.65 E-value=1.2e-08 Score=74.75 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=35.7
Q ss_pred CCccccCCccccCCChhhHHHHHHHhcCCCC----------C-----------------CCCCceeEEEEEeee
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKSILSANHT----------E-----------------DIRAQRSVFIRLKCT 47 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~----------~-----------------~~~~~rsF~cRmk~~ 47 (211)
+|.||+|++++|++||+|++.+++.+..... + ..+.+|+|+||||+.
T Consensus 35 ~~~el~G~~~~~~ihp~D~~~~~~~~~~~~~~~~~e~r~~~kdG~~~wve~~~~~v~~~~~~~~r~~~~~~~~~ 108 (111)
T 2vlg_A 35 LQGEMIGSFLKTFLHEEDQFLVESYFYNEHHLMPCTFRFIKKDHTIVWVEAAVEIVTTRAERTEREIILKMKVL 108 (111)
T ss_dssp CHHHHTTSBGGGGBCGGGHHHHHHHHHCSCCSSCEEEEEECTTSCEEEEEEEEEEC-------CCCEEEEEEEC
T ss_pred CHHHHcCCcHHHeECHhHHHHHHHHHhccCCCccEEEEEEcCCCCEEEEEEEEEEEecccCCceEEEEEEEEEe
Confidence 4679999999999999999999988754221 0 236789999999985
No 13
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.62 E-value=2.9e-08 Score=85.78 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=42.1
Q ss_pred ceeEEEEeCC-eeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHH
Q psy10704 149 QTFLTKHSLD-MKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAF 200 (211)
Q Consensus 149 ~~f~trh~~d-g~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h 200 (211)
..|+...+++ |+|+||++++..+|||.++||+|+++|+|+||+|++.+.+..
T Consensus 25 dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L 77 (309)
T 3gdi_A 25 DMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYT 77 (309)
T ss_dssp TEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHT
T ss_pred CCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhc
Confidence 7899999997 999999999999999999999999999999999999887754
No 14
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.58 E-value=4.6e-08 Score=84.86 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=48.7
Q ss_pred ceeEEEEeCC-eeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHH
Q psy10704 149 QTFLTKHSLD-MKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNA 199 (211)
Q Consensus 149 ~~f~trh~~d-g~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~ 199 (211)
..|+...++| |+|+||++++..+|||.++||+|+++|+|+||+|+..+++.
T Consensus 36 dgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~q 87 (317)
T 4dj3_A 36 DTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAH 87 (317)
T ss_dssp TEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHH
T ss_pred CCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHh
Confidence 7899999996 99999999999999999999999999999999999998774
No 15
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.55 E-value=4.5e-08 Score=85.02 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=48.7
Q ss_pred ceeEEEEeCC-eeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHH
Q psy10704 149 QTFLTKHSLD-MKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAF 200 (211)
Q Consensus 149 ~~f~trh~~d-g~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h 200 (211)
..|+...+++ |+|+||++++..+|||.++||+|+++|+|+||+|++.+++..
T Consensus 36 dGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL 88 (320)
T 4dj2_A 36 DTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGST 88 (320)
T ss_dssp SEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHC
T ss_pred CCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhh
Confidence 7899999996 999999999999999999999999999999999999887753
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.53 E-value=7.4e-08 Score=85.35 Aligned_cols=53 Identities=23% Similarity=0.440 Sum_probs=49.5
Q ss_pred ceeEEEEeCC-eeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 149 QTFLTKHSLD-MKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 149 ~~f~trh~~d-g~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
..|+...++| |+|+||++++..+|||.++||+|+++++|+||+|++.+.+.+.
T Consensus 96 ~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~ 149 (387)
T 4f3l_B 96 DGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLS 149 (387)
T ss_dssp CSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHS
T ss_pred CCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhc
Confidence 7889999998 9999999999999999999999999999999999998886653
No 17
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.51 E-value=1e-07 Score=83.59 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=50.7
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHh
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~ 202 (211)
..|+...+.||+|+||++++..+|||.++||+|+++++|+||+|.+.+.+.+..
T Consensus 96 ~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 96 DGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp TEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred CceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 678888899999999999999999999999999999999999999998887764
No 18
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.44 E-value=1.3e-07 Score=82.61 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=48.7
Q ss_pred ceeEEEEe-CCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 149 QTFLTKHS-LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 149 ~~f~trh~-~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
..|+...+ .||+|+||++++..+|||.++||+|+++++|+||+|++.+.+...
T Consensus 3 dgF~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~ 56 (339)
T 3rty_A 3 DSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQIT 56 (339)
T ss_dssp SCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHH
T ss_pred cEEEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHh
Confidence 46888899 599999999999999999999999999999999999998777655
No 19
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.14 E-value=7.2e-06 Score=65.86 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=57.4
Q ss_pred ceEEEEeeeCCCCCCCCCCC--------C-ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHH
Q psy10704 128 HCFVAIGEPIPHPANYDVPL--------S-QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQN 198 (211)
Q Consensus 128 ~~Lv~i~r~~~~~~~~e~~~--------~-~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~ 198 (211)
..++++.+.++.....|..+ . ...+...+.+|+|+++|+++..++||.++|++|+++..+.++++.+...+
T Consensus 91 ~~~~~~~~DIT~~k~~e~~l~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~ 170 (227)
T 3ewk_A 91 RQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLA 170 (227)
T ss_dssp EEEEEEEEECTTTTHHHHHHHHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHH
T ss_pred EEEEEEEEehhhHHHHHHHHHHHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHH
Confidence 46788899998754332211 1 34566679999999999999999999999999999999999877655544
Q ss_pred HHHh
Q psy10704 199 AFKN 202 (211)
Q Consensus 199 ~h~~ 202 (211)
....
T Consensus 171 ~~~~ 174 (227)
T 3ewk_A 171 AMQE 174 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 20
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=97.72 E-value=4.3e-05 Score=55.24 Aligned_cols=49 Identities=6% Similarity=0.004 Sum_probs=41.4
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHH
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQN 198 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~ 198 (211)
.-+...+.+|+|+++|+++..++||.++|++|+++..++++++......
T Consensus 27 d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~ 75 (130)
T 1d06_A 27 DATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDG 75 (130)
T ss_dssp SEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHH
T ss_pred CeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHH
Confidence 3345578999999999999999999999999999999998877654433
No 21
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=97.71 E-value=3.4e-05 Score=54.39 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=40.0
Q ss_pred eEEEEeCC-eeEEEechhhhhhcCCChhhhcCCCccceecccCHHH
Q psy10704 151 FLTKHSLD-MKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFH 195 (211)
Q Consensus 151 f~trh~~d-g~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~ 195 (211)
-+...+.+ |+|+++|+++..++||.++||+|+++.+++++++...
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~ 55 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV 55 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH
Confidence 34557888 9999999999999999999999999999999987554
No 22
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=97.70 E-value=2.3e-05 Score=55.26 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=42.6
Q ss_pred Ee-CCeeEEEechhhhhhcCCChhhhcCC-CccceecccCHHHHHHHHHhhh
Q psy10704 155 HS-LDMKFTYADETMEDFLGFNPDIFIAK-SVFDFHHAQDSFHIQNAFKNPC 204 (211)
Q Consensus 155 h~-~dg~i~~vd~~~~~~lGy~~~el~G~-s~y~~vH~~D~~~~~~~h~~l~ 204 (211)
.+ .+|+|+++++++..++||.++|++|. .+.+++||+|.+.+.+.+...+
T Consensus 9 ~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~ 60 (115)
T 3h9w_A 9 INWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQS 60 (115)
T ss_dssp EETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHH
T ss_pred EEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45 67999999999999999999999984 4578999999999888776543
No 23
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=97.69 E-value=5.5e-05 Score=53.66 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=39.4
Q ss_pred EEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHH
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~ 196 (211)
+...+.+|+|+++|+++..++||.++|++|+++..++++++....
T Consensus 6 i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~ 50 (119)
T 2vv6_A 6 MIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRH 50 (119)
T ss_dssp EEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHH
T ss_pred EEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHH
Confidence 445789999999999999999999999999999998888776543
No 24
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=97.67 E-value=5.7e-05 Score=53.78 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=39.8
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHH
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFH 195 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~ 195 (211)
..+...+.+|+|+++|+++..++||.++|++|+++..+.++++...
T Consensus 16 ~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~ 61 (120)
T 2gj3_A 16 IAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRL 61 (120)
T ss_dssp SEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHH
T ss_pred CeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHH
Confidence 3455678999999999999999999999999999999988776543
No 25
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=97.49 E-value=8.4e-05 Score=52.07 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=46.9
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l 203 (211)
..+...+.+|+|+++++++..++||.+++++|+++.+++++++...+.+.+..+
T Consensus 10 ~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 63 (126)
T 3mjq_A 10 DMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAEL 63 (126)
T ss_dssp SEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHH
T ss_pred ceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHH
Confidence 334557899999999999999999999999999999999999988777666554
No 26
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=97.48 E-value=9.7e-05 Score=52.70 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=36.7
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccC
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D 192 (211)
..+...+.+|+|+++|+++..++||.++||+|+++..+.++.+
T Consensus 22 d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~ 64 (117)
T 2r78_A 22 DGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVD 64 (117)
T ss_dssp SEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCST
T ss_pred ceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccc
Confidence 3455679999999999999999999999999999877765544
No 27
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=97.47 E-value=4e-05 Score=53.28 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=45.5
Q ss_pred EEEEeCCeeEEEechhhhhhcCCChhhhcCCC--ccceecccCHHHHHHHHHhhh
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGFNPDIFIAKS--VFDFHHAQDSFHIQNAFKNPC 204 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s--~y~~vH~~D~~~~~~~h~~l~ 204 (211)
+...+.++.++++++++..++||.+++++|.. +.+++||+|.+.+.+.+...+
T Consensus 17 i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~ 71 (118)
T 3icy_A 17 IYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLR 71 (118)
T ss_dssp CEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHH
T ss_pred EEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999998864 489999999998888877653
No 28
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.45 E-value=0.00011 Score=50.32 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=43.8
Q ss_pred eEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh
Q psy10704 151 FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 151 f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l 203 (211)
.+...+.+|+|+++|+++..++||.+++++|+++.+++ |++.+.+.+.+..+
T Consensus 15 ~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~ 66 (114)
T 3luq_A 15 ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRG 66 (114)
T ss_dssp EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHH
T ss_pred eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHH
Confidence 34557899999999999999999999999999999987 77777666665544
No 29
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.44 E-value=0.00017 Score=49.28 Aligned_cols=49 Identities=4% Similarity=0.120 Sum_probs=41.3
Q ss_pred EEEeC---CeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 153 TKHSL---DMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 153 trh~~---dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
...+. +|+|+++|+++..++||.++|++|+++..++++++.....+.+.
T Consensus 11 ~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 62 (115)
T 4eet_B 11 VITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIR 62 (115)
T ss_dssp EEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred EEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHH
Confidence 34577 99999999999999999999999999999999888665554444
No 30
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=97.43 E-value=0.0001 Score=51.26 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=47.0
Q ss_pred eEEEEeCCeeEEEechhhhhhcCCChhhhcC--CCccceecccCHHHHHHHHHhhh
Q psy10704 151 FLTKHSLDMKFTYADETMEDFLGFNPDIFIA--KSVFDFHHAQDSFHIQNAFKNPC 204 (211)
Q Consensus 151 f~trh~~dg~i~~vd~~~~~~lGy~~~el~G--~s~y~~vH~~D~~~~~~~h~~l~ 204 (211)
.+...+.++.++++++++..++||.+++++| ..+.+++||+|.+.+.+.+...+
T Consensus 19 ~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 74 (125)
T 3nja_A 19 GSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHV 74 (125)
T ss_dssp EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHH
T ss_pred eEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999 78899999999998887776543
No 31
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=97.39 E-value=0.00013 Score=54.24 Aligned_cols=43 Identities=5% Similarity=0.004 Sum_probs=39.3
Q ss_pred EEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHH
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSF 194 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~ 194 (211)
+...+.+|+|+++|+++..++||.++||+|+++.+++++++..
T Consensus 20 i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~ 62 (129)
T 3mfx_A 20 MILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQA 62 (129)
T ss_dssp EEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCG
T ss_pred EEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHH
Confidence 4457899999999999999999999999999999999998854
No 32
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=97.38 E-value=0.00021 Score=50.08 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=41.0
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHH
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQN 198 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~ 198 (211)
...+...+.+|+|+++|+++..++||.+++++|+++.++++++....+.+
T Consensus 29 ~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~ 78 (125)
T 3fc7_A 29 PDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLE 78 (125)
T ss_dssp CCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHH
T ss_pred CCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHH
Confidence 34456679999999999999999999999999999999995544444433
No 33
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=97.34 E-value=0.00016 Score=51.58 Aligned_cols=53 Identities=8% Similarity=0.084 Sum_probs=43.0
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHh
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~ 202 (211)
.-+...+.+|+|+++|+++..++|+.+++++|+++.+++++++...+.+.+..
T Consensus 23 ~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~ 75 (118)
T 3fg8_A 23 LGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRK 75 (118)
T ss_dssp CEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHH
T ss_pred ceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHH
Confidence 33555789999999999999999999999999999999987665544444443
No 34
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=97.33 E-value=0.00018 Score=49.39 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=46.5
Q ss_pred eeEEEEeCC-eeEEEechhhhhhcCCChhhhcCCC--ccceecccCHHHHHHHHHh
Q psy10704 150 TFLTKHSLD-MKFTYADETMEDFLGFNPDIFIAKS--VFDFHHAQDSFHIQNAFKN 202 (211)
Q Consensus 150 ~f~trh~~d-g~i~~vd~~~~~~lGy~~~el~G~s--~y~~vH~~D~~~~~~~h~~ 202 (211)
..+...+.+ |+++++++++..++||.+++++|.. +.+++||+|.+.+.+.+..
T Consensus 22 ~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (125)
T 3eeh_A 22 DILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS 77 (125)
T ss_dssp CEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH
Confidence 445567888 9999999999999999999999987 8899999999988877765
No 35
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=97.31 E-value=0.00029 Score=50.82 Aligned_cols=44 Identities=7% Similarity=0.184 Sum_probs=36.2
Q ss_pred EEEEeCCe---eEEEechhhhhhcCCChhhhcCCCccceecccCHHH
Q psy10704 152 LTKHSLDM---KFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFH 195 (211)
Q Consensus 152 ~trh~~dg---~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~ 195 (211)
+...+.+| +|+++|+++..++||.++|++|+++..+.++++...
T Consensus 12 i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~ 58 (132)
T 2pr5_A 12 VVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPA 58 (132)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHH
T ss_pred EEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHH
Confidence 44456655 999999999999999999999999988777765443
No 36
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=97.30 E-value=0.00033 Score=51.47 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=42.4
Q ss_pred EEEEeCCeeEEEechhhhhhcCCChhhhcC--CCccceecccCHHHHHHHHHhh
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGFNPDIFIA--KSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy~~~el~G--~s~y~~vH~~D~~~~~~~h~~l 203 (211)
+...++++.++++++++..++||.++++.+ ..+.+++||+|.+.+.+.+...
T Consensus 22 ~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~ 75 (142)
T 3mr0_A 22 LWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAH 75 (142)
T ss_dssp EEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHH
T ss_pred EEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHH
Confidence 445688888999999999999999999987 5678999999999888777654
No 37
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.28 E-value=0.00039 Score=48.91 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=32.5
Q ss_pred CCeeEEEechhhhhhcCCChhhhcCCCccceecccC
Q psy10704 157 LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192 (211)
Q Consensus 157 ~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D 192 (211)
+||+|+++|+++..++||.++|++|+++..+.++++
T Consensus 14 ~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~ 49 (109)
T 1n9l_A 14 PDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGT 49 (109)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTC
T ss_pred CCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCC
Confidence 579999999999999999999999999877777665
No 38
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=97.26 E-value=0.0023 Score=45.03 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=41.8
Q ss_pred CccccCCccccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEee
Q psy10704 2 KVDLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHL 71 (211)
Q Consensus 2 Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~l 71 (211)
..|++|+++++++||+|+..+.+.+..... ..+....+-+|+++. .+.|.++.+++..
T Consensus 39 ~~el~g~~~~~~i~p~d~~~~~~~~~~~~~-~~~~~~~~e~r~~~~-----------dG~~~w~~~~~~~ 96 (121)
T 3f1p_B 39 PQELLGKNIVEFCHPEDQQLLRDSFQQVVK-LKGQVLSVMFRFRSK-----------NQEWLWMRTSSFT 96 (121)
T ss_dssp GGGTTTSBGGGGBCTTTHHHHHHHHHHHTT-STTCCEEEEEEEECT-----------TSCEEEEEEEEEE
T ss_pred hHHHcCCCHHHeECHHHHHHHHHHHHHHHh-cCCCcccEEEEEEec-----------CCCEEEEEEEEEE
Confidence 468999999999999999998887754321 113345667777643 4678888887653
No 39
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.25 E-value=0.00035 Score=49.25 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=41.8
Q ss_pred EEEEeC---CeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 152 LTKHSL---DMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 152 ~trh~~---dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
+...+. +|+|+++|+++..++||.+++++|+++..++++++...+.....
T Consensus 10 i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~ 62 (128)
T 3t50_A 10 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIK 62 (128)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred EEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHH
Confidence 344577 89999999999999999999999999999999887665554443
No 40
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.19 E-value=0.00032 Score=52.91 Aligned_cols=49 Identities=4% Similarity=0.131 Sum_probs=41.9
Q ss_pred EEeCC---eeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHh
Q psy10704 154 KHSLD---MKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202 (211)
Q Consensus 154 rh~~d---g~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~ 202 (211)
..+.+ |+|+++|+++..++||.++|++|+++..++|+++.......+..
T Consensus 22 ~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~ 73 (176)
T 4hia_A 22 LVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRD 73 (176)
T ss_dssp EEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHH
T ss_pred EEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHH
Confidence 35777 99999999999999999999999999999999887665555444
No 41
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.17 E-value=0.00062 Score=49.61 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=33.7
Q ss_pred CCeeEEEechhhhhhcCCChhhhcCCCccceeccc
Q psy10704 157 LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQ 191 (211)
Q Consensus 157 ~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~ 191 (211)
.+|+|+++|+++..++||.++|++|+++..+++++
T Consensus 46 ~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~ 80 (149)
T 3d72_A 46 KDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPD 80 (149)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTT
T ss_pred CCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCcc
Confidence 69999999999999999999999999999999887
No 42
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.15 E-value=0.00047 Score=58.05 Aligned_cols=53 Identities=4% Similarity=0.117 Sum_probs=43.4
Q ss_pred eeEEEEeC---CeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHh
Q psy10704 150 TFLTKHSL---DMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202 (211)
Q Consensus 150 ~f~trh~~---dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~ 202 (211)
..+...+. +|+|+++++++..++||.++|++|+++..++||++.....+....
T Consensus 22 ~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~ 77 (332)
T 2wkq_A 22 KNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRD 77 (332)
T ss_dssp SEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHH
T ss_pred CcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHH
Confidence 33455688 999999999999999999999999999999998876554444433
No 43
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.11 E-value=0.00059 Score=55.34 Aligned_cols=54 Identities=6% Similarity=0.114 Sum_probs=45.3
Q ss_pred ceeEEEEeC---CeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHh
Q psy10704 149 QTFLTKHSL---DMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202 (211)
Q Consensus 149 ~~f~trh~~---dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~ 202 (211)
...+...+. ||+|+++|+++..++||.++|++|+++..++++++..........
T Consensus 73 ~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~ 129 (258)
T 3p7n_A 73 PIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQ 129 (258)
T ss_dssp SSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHH
T ss_pred CccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHH
Confidence 345666889 999999999999999999999999999999999887655554443
No 44
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=97.10 E-value=0.00042 Score=47.87 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=35.4
Q ss_pred EEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceeccc
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQ 191 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~ 191 (211)
+...+.+|+|+++|+++..++||.++|++|+++.++++..
T Consensus 26 i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~ 65 (118)
T 3olo_A 26 SFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDF 65 (118)
T ss_dssp EEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTG
T ss_pred EEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhccccc
Confidence 4456899999999999999999999999999999887543
No 45
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.10 E-value=0.0006 Score=50.26 Aligned_cols=51 Identities=10% Similarity=0.171 Sum_probs=42.6
Q ss_pred eEEEEeC---CeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 151 FLTKHSL---DMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 151 f~trh~~---dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
.+...+. ||+|+++|+++..++||.+++++|+++..++++++.......+.
T Consensus 47 ~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 100 (166)
T 3ue6_A 47 NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIR 100 (166)
T ss_dssp CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHH
Confidence 3455677 89999999999999999999999999999999988665554443
No 46
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=97.09 E-value=0.00073 Score=47.74 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=37.7
Q ss_pred eEEEEeCCeeEEEechhhhhhcCCChhhh--cCCCccceecccCHHHHHH
Q psy10704 151 FLTKHSLDMKFTYADETMEDFLGFNPDIF--IAKSVFDFHHAQDSFHIQN 198 (211)
Q Consensus 151 f~trh~~dg~i~~vd~~~~~~lGy~~~el--~G~s~y~~vH~~D~~~~~~ 198 (211)
.+...+.||+|+++|+++..++||.++|+ +|+++.+++| |...+..
T Consensus 29 ~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~ 76 (126)
T 3bwl_A 29 MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQT 76 (126)
T ss_dssp EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHH
T ss_pred EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHH
Confidence 34557899999999999999999999999 5788888887 5444433
No 47
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=97.02 E-value=0.00053 Score=48.38 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=32.0
Q ss_pred eCCeeEEEechhhhhhcCCChhhhcCCCccceeccc
Q psy10704 156 SLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQ 191 (211)
Q Consensus 156 ~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~ 191 (211)
+.+|+|+++|+++..++||.++||+|+++..+++++
T Consensus 19 ~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~ 54 (120)
T 3mqq_A 19 SRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSS 54 (120)
T ss_dssp EETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSH
T ss_pred ecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCCh
Confidence 569999999999999999999999999987766543
No 48
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=97.00 E-value=0.0017 Score=42.16 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=35.1
Q ss_pred EEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCH
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDS 193 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~ 193 (211)
+...+.+|+|+++|+++..++||.+++++|+++.++ +++.
T Consensus 5 i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~~ 44 (96)
T 3a0s_A 5 IITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDFE 44 (96)
T ss_dssp EEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTCH
T ss_pred EEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cchH
Confidence 455789999999999999999999999999999988 4443
No 49
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=96.94 E-value=0.0018 Score=43.93 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=42.4
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHh
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~ 202 (211)
..+...+.+|+|+++++++..++|+.+++++|+++..+.++++...+.+.+..
T Consensus 18 ~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (124)
T 3lyx_A 18 DAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVIS 70 (124)
T ss_dssp SEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHH
T ss_pred ceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHH
Confidence 34455689999999999999999999999999999977777776655544443
No 50
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=96.90 E-value=0.0015 Score=44.52 Aligned_cols=49 Identities=6% Similarity=0.103 Sum_probs=41.0
Q ss_pred EEEEe---CCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHH
Q psy10704 152 LTKHS---LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAF 200 (211)
Q Consensus 152 ~trh~---~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h 200 (211)
+...+ .+|+|+++++++..++||.+++++|+++.+++++++........
T Consensus 19 i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 70 (130)
T 2z6d_A 19 FVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKI 70 (130)
T ss_dssp EEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHH
T ss_pred eeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHH
Confidence 44456 89999999999999999999999999999999988765544333
No 51
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.88 E-value=0.0012 Score=52.70 Aligned_cols=42 Identities=7% Similarity=0.161 Sum_probs=36.6
Q ss_pred EEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCH
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDS 193 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~ 193 (211)
+...+.+|+|+++|+++..++||.++||+|+++..+.++.+.
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~ 43 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHG 43 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSC
T ss_pred EEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCC
Confidence 456799999999999999999999999999998877765543
No 52
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=96.83 E-value=0.0015 Score=45.84 Aligned_cols=50 Identities=4% Similarity=0.129 Sum_probs=42.3
Q ss_pred EEEEeC---CeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 152 LTKHSL---DMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 152 ~trh~~---dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
+...+. +|+|+++++++..++||.+++++|+++..++++++...+.....
T Consensus 15 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 67 (146)
T 2v0u_A 15 FVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 67 (146)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred EEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHH
Confidence 444677 99999999999999999999999999999999988665544444
No 53
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=96.74 E-value=0.0015 Score=50.04 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=45.4
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhhh
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPC 204 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l~ 204 (211)
.-+...+.||+|+++|+++..++|+.++|++|+++.+++.. +.+++.+..+.++
T Consensus 33 ~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl 86 (152)
T 3mxq_A 33 FALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTAL 86 (152)
T ss_dssp CEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHH
T ss_pred CCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHH
Confidence 44566799999999999999999999999999999998876 7776666666544
No 54
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=96.56 E-value=0.0023 Score=46.77 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=42.7
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHH
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAF 200 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h 200 (211)
..+...+.+|+|+++++++..++||.+++++|+.+.+++++++...+...+
T Consensus 51 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (167)
T 1v9y_A 51 MGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYI 101 (167)
T ss_dssp SEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHH
T ss_pred CCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHH
Confidence 445567899999999999999999999999999999999988755444333
No 55
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=96.55 E-value=0.0022 Score=42.44 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCeeEEEechhhhhhcCCChhhhcCCC-ccceec-ccCHH
Q psy10704 157 LDMKFTYADETMEDFLGFNPDIFIAKS-VFDFHH-AQDSF 194 (211)
Q Consensus 157 ~dg~i~~vd~~~~~~lGy~~~el~G~s-~y~~vH-~~D~~ 194 (211)
.+|+|+++++++..++||.+++++|++ +..+++ +++..
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 51 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQR 51 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCH
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCH
Confidence 369999999999999999999999998 355554 44433
No 56
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=96.47 E-value=0.0015 Score=45.65 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=38.6
Q ss_pred ccccCCccccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEee
Q psy10704 3 VDLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHL 71 (211)
Q Consensus 3 ~dL~G~Siyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~l 71 (211)
.||+|+++++++||+|++.+.+.+..... .+....+-+|+++. .+.+.++.+++..
T Consensus 37 ~el~g~~~~~~~~p~d~~~~~~~~~~~~~--~~~~~~~e~r~~~~-----------dG~~~w~~~~~~~ 92 (117)
T 3f1p_A 37 EELLGRSAYEFYHALDSENMTKSHQNLCT--KGQVVSGQYRMLAK-----------HGGYVWLETQGTV 92 (117)
T ss_dssp HHHTTSBGGGGBCGGGHHHHHHHHHHHHH--HSEEECCCEEEECT-----------TSSEEEEEEEEEE
T ss_pred HHHcCCchhheECHHHHHHHHHHHHHHHh--CCCeeeeEEEEEec-----------CCCEEEEEEeeEE
Confidence 57899999999999999988877654321 12223445666643 4678888887653
No 57
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.40 E-value=0.0018 Score=44.90 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=37.4
Q ss_pred eeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccC
Q psy10704 150 TFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D 192 (211)
.-+...+.+|+|+++|+++..++||.+++++|+++.+++++++
T Consensus 18 ~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~ 60 (115)
T 3b33_A 18 TATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHAS 60 (115)
T ss_dssp SEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEE
T ss_pred ceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccc
Confidence 3345578999999999999999999999999999999887643
No 58
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=96.34 E-value=0.0024 Score=46.95 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=41.8
Q ss_pred eeEEEEe-CCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh
Q psy10704 150 TFLTKHS-LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 150 ~f~trh~-~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l 203 (211)
..+...+ .+|+|+++|+++..++||. +++|+++.+++++++...+...+..+
T Consensus 28 ~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~ 80 (158)
T 3k3c_A 28 AILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRV 80 (158)
T ss_dssp SEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHH
T ss_pred ceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHH
Confidence 3455567 9999999999999999998 99999999999988765444444443
No 59
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.20 E-value=0.0073 Score=41.78 Aligned_cols=47 Identities=6% Similarity=0.161 Sum_probs=36.1
Q ss_pred EEEEeC---CeeEEEechhhhhhcCCChhhhcCCC--ccceecccCHHHHHH
Q psy10704 152 LTKHSL---DMKFTYADETMEDFLGFNPDIFIAKS--VFDFHHAQDSFHIQN 198 (211)
Q Consensus 152 ~trh~~---dg~i~~vd~~~~~~lGy~~~el~G~s--~y~~vH~~D~~~~~~ 198 (211)
+...+. +|+|+++++++..++||.+++++|++ +..+.++++...+.+
T Consensus 32 i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (138)
T 2l0w_A 32 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAA 83 (138)
T ss_dssp EEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHH
T ss_pred EEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHH
Confidence 445677 99999999999999999999999998 344455555444333
No 60
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=96.05 E-value=0.0052 Score=45.97 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=38.6
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccC
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D 192 (211)
..-+...+.||+|++.|.....+.||.++|++|+++++.+.|..
T Consensus 27 ~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~ 70 (125)
T 1nwz_A 27 AFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCT 70 (125)
T ss_dssp SSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG
T ss_pred CceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchh
Confidence 34466789999999999999999999999999999999777654
No 61
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=96.05 E-value=0.0043 Score=45.38 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=41.7
Q ss_pred eeEEEEeCCe---eEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHH
Q psy10704 150 TFLTKHSLDM---KFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAF 200 (211)
Q Consensus 150 ~f~trh~~dg---~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h 200 (211)
..+...+.+| +|+++++++..++||..++++|+.+.+++++++...+...+
T Consensus 36 ~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 89 (162)
T 3sw1_A 36 DGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARI 89 (162)
T ss_dssp SEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHH
T ss_pred CcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHH
Confidence 3455567888 99999999999999999999999999999887755444333
No 62
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=95.96 E-value=0.0062 Score=45.83 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=38.7
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccC
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D 192 (211)
..-+...+.+|+|++.|.....+.||.++|++|+++++.+.|..
T Consensus 32 ~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~ 75 (129)
T 1mzu_A 32 PVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCT 75 (129)
T ss_dssp SSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG
T ss_pred CceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchh
Confidence 34467789999999999999999999999999999999777654
No 63
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=95.64 E-value=0.004 Score=42.60 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=37.2
Q ss_pred EEEEeCCeeEEEechhhhhhcCC---ChhhhcCCCccceecccCHH
Q psy10704 152 LTKHSLDMKFTYADETMEDFLGF---NPDIFIAKSVFDFHHAQDSF 194 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lGy---~~~el~G~s~y~~vH~~D~~ 194 (211)
+...+.+|+|+++|+++..++|| .+++++|+++.++++++++.
T Consensus 28 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 73 (118)
T 2w0n_A 28 VVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVDVS 73 (118)
T ss_dssp CEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHHHH
T ss_pred EEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchhHH
Confidence 34468999999999999999998 78999999999998876533
No 64
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=95.55 E-value=0.014 Score=44.72 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=41.7
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHH
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~ 196 (211)
..-+.-.+.+|+|+++|+++..++|+.+++++|+++.+++++.+...+
T Consensus 90 ~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~~~ 137 (190)
T 2jhe_A 90 PEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 (190)
T ss_dssp SSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHHHH
T ss_pred CCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHHHH
Confidence 344666899999999999999999999999999999999988776543
No 65
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=95.38 E-value=0.0066 Score=46.52 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=37.8
Q ss_pred ceeEEEEe-CCeeEEEechhhhhhcCCChhhhcCCCccceecccCHH
Q psy10704 149 QTFLTKHS-LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSF 194 (211)
Q Consensus 149 ~~f~trh~-~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~ 194 (211)
...+...+ .||+|+++|+++..++||. +++|+++.+++++++..
T Consensus 47 ~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~ 91 (185)
T 3kx0_X 47 PAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQ 91 (185)
T ss_dssp SSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSS
T ss_pred CceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhh
Confidence 34455678 9999999999999999998 99999999999887643
No 66
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=95.21 E-value=0.013 Score=54.90 Aligned_cols=53 Identities=6% Similarity=-0.001 Sum_probs=46.6
Q ss_pred eEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHHhh
Q psy10704 151 FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203 (211)
Q Consensus 151 f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~~l 203 (211)
.+...+++|+|+++|+++..++||.++|++|+.+...+|++|.+.+......+
T Consensus 530 ~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l 582 (635)
T 4eho_A 530 PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELI 582 (635)
T ss_dssp CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHH
T ss_pred cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHH
Confidence 35567999999999999999999999999999999999999988877665543
No 67
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.10 E-value=0.0098 Score=49.95 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=40.5
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHH
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHI 196 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~ 196 (211)
...+...+.+|+|+++|+++..++||.++|++|+++.++.++++....
T Consensus 18 ~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~~~~ 65 (349)
T 3a0r_A 18 ETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSV 65 (349)
T ss_dssp SSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHHHHH
T ss_pred cCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHHHHH
Confidence 344556799999999999999999999999999999999777665433
No 68
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=95.06 E-value=0.015 Score=41.25 Aligned_cols=38 Identities=21% Similarity=0.487 Sum_probs=33.5
Q ss_pred EEEEeCCeeEEEechhhhhhcC------------CChhhhcCCCccceec
Q psy10704 152 LTKHSLDMKFTYADETMEDFLG------------FNPDIFIAKSVFDFHH 189 (211)
Q Consensus 152 ~trh~~dg~i~~vd~~~~~~lG------------y~~~el~G~s~y~~vH 189 (211)
+...+.+|+|+++|+++..++| |.+++++|+++.+++.
T Consensus 18 viv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 18 VMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp EEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred EEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 4556899999999999999995 8999999999988774
No 69
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=94.90 E-value=0.043 Score=37.92 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=37.8
Q ss_pred CccccCCccccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEe
Q psy10704 2 KVDLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGH 70 (211)
Q Consensus 2 Q~dL~G~Siyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~ 70 (211)
..|++|+++++++||+|...+.+.+..... ..+....+-+|+++. .+.+.++.+++.
T Consensus 40 ~~el~g~~~~~~~~p~d~~~~~~~~~~~~~-~~~~~~~~e~r~~~~-----------dG~~~~~~~~~~ 96 (121)
T 2kdk_A 40 PQELLGTSCYEYFHQDDHNNLTDKHKAVLQ-SKEKILTDSYKFRAK-----------DGSFVTLKSQWF 96 (121)
T ss_dssp TTTSBTSBTTTTBCSSSHHHHHHHHHHHHT-SSSCEEEEEEEEECS-----------SSCEEEEEEEEE
T ss_pred HHHHcCCcHHHeeCHHHHHHHHHHHHHHHh-CCCCCccEEEEEEEc-----------CCCEEEEEEEEE
Confidence 468999999999999999887766543211 112334556676643 456777877654
No 70
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=94.65 E-value=0.037 Score=38.15 Aligned_cols=57 Identities=16% Similarity=0.041 Sum_probs=36.7
Q ss_pred ccccCC-ccccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEeee
Q psy10704 3 VDLMGQ-SIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHLV 72 (211)
Q Consensus 3 ~dL~G~-Siyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~l~ 72 (211)
.+++|. .+.+++||+|+..+.+.+...... +....+-+|+++. .+.|.++.+.|...
T Consensus 32 ~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~--~~~~~~e~r~~~~-----------dG~~~w~~~~~~~~ 89 (115)
T 3h9w_A 32 GSWKSVEDWATRMHPEDQEWVVNFCVKQSEC--GVDHEADYRALHR-----------DGHYVWIRDVVHVV 89 (115)
T ss_dssp GGCCBHHHHHHSBCHHHHHHHHHHHHHHHHT--TCCEEEEEEEECT-----------TSCEEEEEEEEEEE
T ss_pred HHccCHHHHHHhcCHHHHHHHHHHHHHHHhc--CCcccEEEEEEcC-----------CCCEEEEEEEEEEE
Confidence 345553 357899999999988776543211 2234556677643 46788998887643
No 71
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=94.46 E-value=0.025 Score=45.73 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=35.4
Q ss_pred ceeEEEEeCCeeEEEechhhhhhc------------CCChhhhcCCCccceec
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFL------------GFNPDIFIAKSVFDFHH 189 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~l------------Gy~~~el~G~s~y~~vH 189 (211)
..-+...+.+|+|+|+|+++..++ ||.+++++|+++..|+.
T Consensus 32 ~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~ 84 (233)
T 3vol_A 32 SANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 84 (233)
T ss_dssp SSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS
T ss_pred CCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC
Confidence 344566799999999999999988 89999999999888764
No 72
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=94.29 E-value=0.0016 Score=49.16 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=34.3
Q ss_pred ccccCCccccCCChhhHH--HHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEee
Q psy10704 3 VDLMGQSIYEVTHPCDHS--EVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHL 71 (211)
Q Consensus 3 ~dL~G~Siyd~iHp~D~~--~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~l 71 (211)
.||+|+|||||.|++|.+ .+++.+..-..+ ++.-+=.-|++.+ .++|-+++-..++
T Consensus 36 qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~--Gq~~S~~YRfr~k-----------~g~~V~~qT~sk~ 93 (132)
T 1oj5_A 36 EDLVRKCIYAFFQPQGREPSYARQLFQEVMTR--GTASSPSYRFILN-----------DGTMLSAHTRCKL 93 (132)
T ss_dssp HHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHH--SEEECCCEEEECT-----------TSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHc--CCccccceEEEec-----------CCcEEEEEEEEEE
Confidence 599999999999999965 555533222110 2222224566543 5678888765543
No 73
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=94.20 E-value=0.055 Score=41.00 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=34.0
Q ss_pred eeEEEEeCCeeEEEechh---hhhhcCCChhhhcCCCccceecccC
Q psy10704 150 TFLTKHSLDMKFTYADET---MEDFLGFNPDIFIAKSVFDFHHAQD 192 (211)
Q Consensus 150 ~f~trh~~dg~i~~vd~~---~~~~lGy~~~el~G~s~y~~vH~~D 192 (211)
.-++-.+.+|+|+|++++ ...++| .+++++|++++++ ||..
T Consensus 30 ~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~-~~~~ 73 (151)
T 2qkp_A 30 LEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELC-HPPK 73 (151)
T ss_dssp SEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGS-SCHH
T ss_pred CceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHh-CCHH
Confidence 335667999999999999 899999 6789999999885 5533
No 74
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=92.89 E-value=0.065 Score=46.48 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=40.1
Q ss_pred CCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHH
Q psy10704 157 LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAF 200 (211)
Q Consensus 157 ~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h 200 (211)
.+++|++++..+..++|+.+++++|+++.+++++++...+.+..
T Consensus 51 ~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~l 94 (337)
T 2ool_A 51 TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHAL 94 (337)
T ss_dssp TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999988877654
No 75
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=91.31 E-value=0.34 Score=32.53 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=34.1
Q ss_pred cccCC--ccccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEee
Q psy10704 4 DLMGQ--SIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHL 71 (211)
Q Consensus 4 dL~G~--Siyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~l 71 (211)
+++|. .+.+++||+|+..+.+.+..... .+..-.+-.|++.. .+.+.++.+.+..
T Consensus 43 ~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~--~~~~~~~e~r~~~~-----------~g~~~w~~~~~~~ 99 (118)
T 3icy_A 43 HAGTTRLNTLSMIHHDDRHMLSNAYSKLRE--AKHSLTLVYRIVTP-----------EGKLHWIEDHMRS 99 (118)
T ss_dssp ETTEEEEGGGGGBCGGGHHHHHHHHHHHHH--SCCEEEEEEEEECT-----------TCCEEEEEEEEEE
T ss_pred HccCChhHHHHHcCHHHHHHHHHHHHHHHh--cCCCceEEEEEECC-----------CCCEEEEEEEEEE
Confidence 44555 34899999999998887754321 12334455666532 3567788777653
No 76
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=89.72 E-value=0.64 Score=33.25 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=31.3
Q ss_pred CccccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEee
Q psy10704 8 QSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGHL 71 (211)
Q Consensus 8 ~Siyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~l 71 (211)
..+.++|||+|+..+...+...... +..-.+-+|++.. .+.|.++.+.|..
T Consensus 54 ~~~~~~ihpdD~~~~~~~~~~~~~~--~~~~~~e~r~~~~-----------~G~~~w~~~~~~~ 104 (142)
T 3mr0_A 54 TGHRESIHPDDRARVLAALKAHLEH--RDTYDVEYRVRTR-----------SGDFRWIQSRGQA 104 (142)
T ss_dssp C---CCBCTTTHHHHHHHHHHHHHH--CCCEEEEEEEECT-----------TSCEEEEEEEEEE
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHhC--CCceEEEEEEECC-----------CCCEEEEEEEEEE
Confidence 3568999999999888776443211 2223445566532 4678999988864
No 77
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=88.90 E-value=0.8 Score=30.63 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=35.2
Q ss_pred ccccC--CccccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEe
Q psy10704 3 VDLMG--QSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGH 70 (211)
Q Consensus 3 ~dL~G--~Siyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~ 70 (211)
.+++| ..+.+++||+|...+...+...... +....+-.|++.. .+.+.++.+.+.
T Consensus 45 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~e~~~~~~-----------~g~~~~~~~~~~ 101 (125)
T 3nja_A 45 ATFDATEDAYFQRVHPDDRARVRRELDRHVLG--DRPFDVEYRIVRP-----------DGQVRELLERNH 101 (125)
T ss_dssp TTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHS--CCCEEEEEEEECT-----------TSCEEEEEEEEE
T ss_pred ccccccHHHHHhhcChhHHHHHHHHHHHHHhc--CCCceEEEEEECC-----------CCCEEEEEEeeE
Confidence 46777 7788999999999887776433211 2224455555432 356788887765
No 78
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=88.18 E-value=0.55 Score=40.62 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=36.3
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHH
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSF 194 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~ 194 (211)
..-+...+.+|+|+++|++ ..++ +.+++++|+++.+++.+....
T Consensus 249 ~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~ 292 (369)
T 3cax_A 249 PVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVY 292 (369)
T ss_dssp SSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHH
T ss_pred CCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHH
Confidence 3446678999999999999 9999 999999999999876554443
No 79
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=77.22 E-value=3.5 Score=26.90 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=33.0
Q ss_pred cccCCc--cccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeeecCCCCccccCCCCceEEEEEEEe
Q psy10704 4 DLMGQS--IYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYKVIHCTGH 70 (211)
Q Consensus 4 dL~G~S--iyd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~~~~r~~~~~~~~~~y~~v~~~G~ 70 (211)
+++|.. +.+++||+|...+...+.... .+....+-+|++.. .+.+.++.+++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~~-----------~g~~~~~~~~~~ 105 (125)
T 3eeh_A 51 KLRENPHDFLNGIHPEDRELMKDTMQSLM---DGESADVECRVNAT-----------EEYQRWVWIQGE 105 (125)
T ss_dssp HHHHCGGGGGGGBCHHHHHHHHHHHHHHH---TTCCEEEEEEECGG-----------GTTCEEEEEEEE
T ss_pred HHccCcHHHHHhcCHHHHHHHHHHHHHHH---cCCCccEEEEEEcC-----------CCCEEEEEEecE
Confidence 455666 789999999998887775421 12333555666432 244667766653
No 80
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=72.08 E-value=3 Score=35.87 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=40.4
Q ss_pred EeCCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHHHH
Q psy10704 155 HSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201 (211)
Q Consensus 155 h~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~h~ 201 (211)
.+.|++|+.++..+..+||..+++++|+++-+++-++....+..+..
T Consensus 35 ~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~~~l~ 81 (327)
T 4e04_A 35 LAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALA 81 (327)
T ss_dssp ECTTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHHHHHH
T ss_pred EcCCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHHHHhh
Confidence 34789999999999999999999999999999998777777766543
No 81
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=71.13 E-value=2.3 Score=36.88 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCeeEEEechhhhhhcCCChhhhcCCCccceecccCHHHHHHH
Q psy10704 157 LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNA 199 (211)
Q Consensus 157 ~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~~~~~~ 199 (211)
.|++|++++..+..+||..+++++|+++-+++-+ ....+.++
T Consensus 61 ~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~~~ 102 (343)
T 3s7o_A 61 HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQAA 102 (343)
T ss_dssp TTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHHHH
T ss_pred CCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHHHH
Confidence 4899999999999999999999999999998877 77777655
No 82
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=61.62 E-value=3.1 Score=33.79 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=34.6
Q ss_pred EEEEe-CCeeEEEechhhhhhcCCChhhh----cCC----CccceecccCHHHHHH
Q psy10704 152 LTKHS-LDMKFTYADETMEDFLGFNPDIF----IAK----SVFDFHHAQDSFHIQN 198 (211)
Q Consensus 152 ~trh~-~dg~i~~vd~~~~~~lGy~~~el----~G~----s~y~~vH~~D~~~~~~ 198 (211)
+...+ -.+.+.++...+..++||.++++ +.. -+.+.+||+|...+.+
T Consensus 46 ~~l~D~~~~~~~~~s~~~~~llG~~~~~~~~~~~~~~~~~~ll~~i~p~D~~~~~~ 101 (258)
T 3clo_A 46 AVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRL 101 (258)
T ss_dssp EEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHH
T ss_pred EEEEEcCCCeEEEEeCCHHHHhCCCcccchHHHHhhhHHHHHHHhCChHHHHHHHH
Confidence 34455 46889999999999999999988 432 2445789999775443
No 83
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=62.22 E-value=2.2 Score=35.89 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=33.9
Q ss_pred ceeEEEEeCCeeEEEechhhhhhcC---CChhhhcCCCccceeccc
Q psy10704 149 QTFLTKHSLDMKFTYADETMEDFLG---FNPDIFIAKSVFDFHHAQ 191 (211)
Q Consensus 149 ~~f~trh~~dg~i~~vd~~~~~~lG---y~~~el~G~s~y~~vH~~ 191 (211)
.+-+...+.+|+|+++|+++..++| +. ++++|+++.+++...
T Consensus 180 ~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~ 224 (305)
T 2ykf_A 180 GDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPL 224 (305)
Confidence 3445667899999999999998875 44 799999999988643
No 84
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=51.88 E-value=6.7 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.1
Q ss_pred CCccccCCccccCCChhhHHHHHH
Q psy10704 1 MKVDLMGQSIYEVTHPCDHSEVKS 24 (211)
Q Consensus 1 ~Q~dL~G~Siyd~iHp~D~~~~~~ 24 (211)
+..||+|+++.+++++++......
T Consensus 35 ~~~el~g~~~~~l~~~~~~~~~~~ 58 (114)
T 1ll8_A 35 SSQDLIGQKLTQFFLRSDSDVVEA 58 (114)
T ss_dssp CTTTTTTSBGGGGSSCTTTHHHHH
T ss_pred CHHHHcCCCHHHhcCcchhHHHHH
Confidence 357899999999999988765443
No 85
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=40.86 E-value=10 Score=34.63 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=33.0
Q ss_pred CCeeEEEechhhhhhcCCChhhhcCCCccceecccCHH
Q psy10704 157 LDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSF 194 (211)
Q Consensus 157 ~dg~i~~vd~~~~~~lGy~~~el~G~s~y~~vH~~D~~ 194 (211)
.|++|++++..+..+||..+++++|+++-+++-++...
T Consensus 38 ~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~ 75 (520)
T 3zq5_A 38 PDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQID 75 (520)
T ss_dssp TTTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEESSCC
T ss_pred CCCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHHHHH
Confidence 47899999999999999999999999998887665443
No 86
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=31.02 E-value=33 Score=31.07 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=35.9
Q ss_pred EeCCeeEEEechhhhhhcCCChhhhcCCCccc-eecccCHHHHHHHH
Q psy10704 155 HSLDMKFTYADETMEDFLGFNPDIFIAKSVFD-FHHAQDSFHIQNAF 200 (211)
Q Consensus 155 h~~dg~i~~vd~~~~~~lGy~~~el~G~s~y~-~vH~~D~~~~~~~h 200 (211)
.+.|++|+.++..+..+||..+ ++|+++-+ ++-++....+..+.
T Consensus 32 l~~~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~~~~~~l~~~l 76 (505)
T 3nhq_A 32 LRADGMVLAASENIQALLGFVA--SPGSYLTQEQVGPEVLRMLEEGL 76 (505)
T ss_dssp ECTTSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHHHHHHHHHHHH
T ss_pred EcCCCeEEEEcccHHHHhCccc--ccCCchhhhhCCHHHHHHHHHHh
Confidence 3458999999999999999988 99999998 88766666665543
No 87
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=22.78 E-value=30 Score=23.52 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=22.7
Q ss_pred ccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeee
Q psy10704 11 YEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCT 47 (211)
Q Consensus 11 yd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~ 47 (211)
-|++||.-.++=++.-.... .+..+|+|+++||.
T Consensus 5 ~dLl~P~~~~e~~khK~k~L---v~~PnS~Fm~VkCp 38 (82)
T 3u5c_b 5 QDLLHPTAASEARKHKLKTL---VQGPRSYFLDVKCP 38 (82)
T ss_dssp CCSSSCCHHHHHSSCTTTSS---SCCCCCCEEEEECT
T ss_pred hhhcCCCHHHHhhhhhheee---ccCCCCcEEEEECC
Confidence 47888876665544433332 25678999999986
No 88
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=21.46 E-value=44 Score=22.64 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred ccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeee
Q psy10704 11 YEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCT 47 (211)
Q Consensus 11 yd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~ 47 (211)
.|++||.-..+-++.-.... .+..+|+|+++||.
T Consensus 3 ~dll~p~~~~e~~k~K~k~L---v~~PnS~Fm~VkCp 36 (81)
T 2xzm_6 3 RDLLNPIYEEEKQKNKFKRL---IQAPNSYFMDVKCA 36 (81)
T ss_dssp CCSSSCCHHHHHHSCTTTSS---SCCCSCCEEEEECS
T ss_pred hhhcCCCHHHHhhhhheeee---eeCCCCcEEEeECC
Confidence 47888886665554432222 24668899999986
No 89
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.01 E-value=31 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=7.3
Q ss_pred ccCCChhhHHHHHHHhcCCCCCCCCCceeEEEEEeee
Q psy10704 11 YEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCT 47 (211)
Q Consensus 11 yd~iHp~D~~~~~~~L~~~~~~~~~~~rsF~cRmk~~ 47 (211)
.|++||.-.++=++.-.... .+..+|+|+++||.
T Consensus 7 ~DLl~P~~e~e~~khK~k~L---v~~PnS~Fm~VkCp 40 (86)
T 3iz6_X 7 IDLLNPPAELEKLKHKKKRL---VQSPNSFFMDVKCQ 40 (86)
T ss_dssp -----------------------------CEEEEECT
T ss_pred hhccCCCHHHHhhhhhheee---ccCCCCcEeEEECC
Confidence 47888876555444332222 24568999999986
Done!