RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10704
(211 letters)
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS,
circadian rhythm proteins, transcription-activato; 2.27A
{Mus musculus}
Length = 361
Score = 111 bits (279), Expect = 1e-29
Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 29/206 (14%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS----ANHTEDIRAQRSVFIRLKCTLTSKGRNVNV 57
DL+ QSI+ +HSEV ILS + + +S C +G
Sbjct: 123 PSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTIDPK 182
Query: 58 KAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVG 117
+ +TY+ + G+ + +++ E ++ R
Sbjct: 183 EPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRV---------------- 226
Query: 118 EKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFNP 176
V + P V ++ F ++HSL+ KF + D +G+ P
Sbjct: 227 --------CFVATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLP 278
Query: 177 DIFIAKSVFDFHHAQDSFHIQNAFKN 202
+ S +D++H D ++ ++
Sbjct: 279 FEVLGTSGYDYYHVDDLENLAKCHEH 304
Score = 34.9 bits (80), Expect = 0.012
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 151 FLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
F D Y E++ L P + +S+F+F +
Sbjct: 98 FFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGE 139
>3rty_A Period circadian protein; PAS domain, signalling, timeless,
circadian clock protein; 2.85A {Drosophila melanogaster}
PDB: 1wa9_A 3gec_A
Length = 339
Score = 103 bits (258), Expect = 9e-27
Identities = 31/216 (14%), Positives = 66/216 (30%), Gaps = 54/216 (25%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS---------ANHTEDIRAQRSVFIRLKCTLTSKG 52
+ +G+S + H D + S ++ + +D ++ V +R L S G
Sbjct: 31 RDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGG 90
Query: 53 RNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEP 112
V + +Y+ + A + +
Sbjct: 91 FGVIGRPVSYEPFRLGLTFREAPEEARPDNYM---------------------------- 122
Query: 113 EEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL------SQTFLTKHSLDMKFTYADE 166
+ + P ++Y VP S F +H+ ++ D
Sbjct: 123 -----------VSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDS 171
Query: 167 TMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
LG+ P I +S+ DF+H +D ++ ++
Sbjct: 172 AAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYET 207
Score = 30.4 bits (68), Expect = 0.36
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 160 KFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
Y ++ D LG+ D+++ +S DF H +D
Sbjct: 15 IVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKD 47
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological
rhythms, cytoplasm, nucleus, phosphoprotein,
transcription; 2.40A {Mus musculus}
Length = 309
Score = 97.7 bits (243), Expect = 9e-25
Identities = 32/215 (14%), Positives = 53/215 (24%), Gaps = 63/215 (29%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILSANH-------------TEDIRAQRSVFIRLKCTL 48
K E P D S S + T++ ++S F R+
Sbjct: 53 KDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQECMEEKSFFCRVSVGK 112
Query: 49 TSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKD 108
+ Y+ T +LV+ +Q++
Sbjct: 113 HHE------NEIRYQPFRMTPYLVK------------------------------VQEQQ 136
Query: 109 DSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADET 167
+E C + +P + F T H+ + F DE
Sbjct: 137 GAES-------------QLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQAVDER 183
Query: 168 MEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
LG+ P I V H D + K
Sbjct: 184 AVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKK 218
Score = 30.7 bits (69), Expect = 0.28
Identities = 6/33 (18%), Positives = 8/33 (24%)
Query: 160 KFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
K Y + D F +F D
Sbjct: 37 KILYISNQVASIFHCKKDAFSDAKFVEFLAPHD 69
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 93.5 bits (232), Expect = 9e-23
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 73/241 (30%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-------------------------ANHTEDIRA 36
+ DL+GQS+++ HP D ++VK LS A
Sbjct: 124 QNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGA 183
Query: 37 QRSVFIRLKCTL----------TSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLME 86
+RS F R+KC S ++ IH TG+L +
Sbjct: 184 RRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLK----------SWPP 233
Query: 87 PQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVVTEPSHCFVAIG----EPIPHPAN 142
+ ++ ++ G + C VAIG +P PAN
Sbjct: 234 TKMGLDEDNEPDNEGCNL-----------------------SCLVAIGRLHSHMVPQPAN 270
Query: 143 YDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFK 201
++ + S ++++H++D KF + D+ L + P + S +++ H D H+ +
Sbjct: 271 GEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHR 330
Query: 202 N 202
Sbjct: 331 Q 331
Score = 28.8 bits (64), Expect = 1.3
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 151 FLTKHSLDM-KFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
FL D K + E++ L ++ + I +S+FD+ H +D
Sbjct: 98 FLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKD 140
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock
protein, protein binding; 2.75A {Mus musculus}
Length = 320
Score = 91.2 bits (226), Expect = 3e-22
Identities = 32/216 (14%), Positives = 56/216 (25%), Gaps = 65/216 (30%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS-------------ANHTEDIRAQRSVFIRLKCTL 48
+ G E+ P D + + +D ++SVF R++
Sbjct: 64 RDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFTQEKSVFCRIRGG- 122
Query: 49 TSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKD 108
Y+ T ++ + I+ D
Sbjct: 123 -----PDRDPGPRYQPFRLTPYVTK------------------------------IRVSD 147
Query: 109 DSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYD--VPLSQTFLTKHSLDMKFTYADE 166
+ + C + I E I P + F T+H+ F DE
Sbjct: 148 GAPAQ--------------PCCLLIAERIHSGYEAPRIPPDKRIFTTRHTPSCLFQDVDE 193
Query: 167 TMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
LG+ P + V F H +D + K
Sbjct: 194 RAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKK 229
Score = 31.1 bits (70), Expect = 0.23
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 160 KFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
+ Y E L D+F + QD
Sbjct: 48 RIVYISEQAGVLLRCKRDVFRGARFSELLAPQD 80
Score = 26.5 bits (58), Expect = 6.5
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYK 63
DL+G + HP D + +I + IR G V + +
Sbjct: 205 DLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF---CARNGEYVTMDTSWAG 261
Query: 64 VIH 66
+H
Sbjct: 262 FVH 264
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm,
protein binding; 2.50A {Mus musculus}
Length = 317
Score = 90.1 bits (223), Expect = 7e-22
Identities = 27/214 (12%), Positives = 51/214 (23%), Gaps = 63/214 (29%)
Query: 2 KVDLMGQSIYEVTHPCDHSEVKSILS------------ANHTEDIRAQRSVFIRLKCTLT 49
+ L ++ P D + + + + F R+
Sbjct: 64 RGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAPAKPFFCRICGGGD 123
Query: 50 SKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDD 109
+ R+ Y +LV +
Sbjct: 124 REKRH-------YSPFRILPYLVH------------------------------VHSSAQ 146
Query: 110 SEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPL-SQTFLTKHSLDMKFTYADETM 168
EPE C + + +P+ + F T H+ F DE
Sbjct: 147 PEPE-------------PCCLTLVEKIHSGYEAPRIPVDKRIFTTTHTPGCVFLEVDERA 193
Query: 169 EDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
LG+ P I S+ + H +D + +
Sbjct: 194 VPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQK 227
Score = 30.4 bits (68), Expect = 0.39
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 160 KFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
+ + E L + D QD
Sbjct: 48 RLVHISEQAALILNSKRGFLKSVHFVDLLAPQD 80
Score = 27.7 bits (61), Expect = 2.8
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKC--TLTSKGRNVNVKAAT 61
DL+G SI HP D + +I H + ++ T G V + ++
Sbjct: 203 DLIGTSILTYLHPEDRPLMVAI----HQKVLKYAGHPPFEHSPVRFCTQNGEYVILDSSW 258
Query: 62 YKVIH 66
++
Sbjct: 259 SSFVN 263
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian
clock, PAS domain, transcription, activator, biolo
rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Length = 121
Score = 64.6 bits (158), Expect = 7e-14
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 139 HPANYDVPL-SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQ 197
H + ++ + F+T+ +++ KF Y D+ LG+ P + S +++ H D ++
Sbjct: 2 HMNSGEINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLT 61
Query: 198 NAFKN 202
+ K
Sbjct: 62 DKHKA 66
Score = 27.3 bits (61), Expect = 2.2
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKC 46
+L+G S YE H DH+ + A + + +
Sbjct: 42 ELLGTSCYEYFHQDDHNNLTDKHKAVLQSK-EKILTDSYKFRA 83
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A
Length = 117
Score = 63.0 bits (154), Expect = 2e-13
Identities = 22/55 (40%), Positives = 42/55 (76%)
Query: 148 SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
S+TFL++HS+DMKFTY D+ + + +G++P+ + +S ++F+HA DS ++ + +N
Sbjct: 8 SKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQN 62
Score = 25.3 bits (56), Expect = 9.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSI 25
+L+G+S YE H D +
Sbjct: 38 ELLGRSAYEFYHALDSENMTKS 59
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A*
2k7s_A 2a24_B
Length = 121
Score = 59.2 bits (144), Expect = 7e-12
Identities = 12/55 (21%), Positives = 31/55 (56%)
Query: 148 SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
F+++H+++ FT+ D +G+ P + K++ +F H +D ++++F+
Sbjct: 11 PTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQ 65
Score = 28.0 bits (63), Expect = 1.2
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 45/123 (36%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYK 63
+L+G++I E HP D ++ + + KG+ ++V ++
Sbjct: 41 ELLGKNIVEFCHPEDQQLLRDS------------------FQQVVKLKGQVLSV---MFR 79
Query: 64 VIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVV 123
+ +T Q+ E E + V
Sbjct: 80 FRSKNQEWLWMRT-----------------------SSFTFQNPYSDEIEYIIC-TNTNV 115
Query: 124 TEP 126
Sbjct: 116 KNS 118
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory
system, two-component signal transduction, transferase,
phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Length = 111
Score = 43.2 bits (102), Expect = 5e-06
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 148 SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203
+ + + Y + LG+ I + F H +D F +++ F N
Sbjct: 8 KTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYNE 63
Score = 27.4 bits (61), Expect = 1.7
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 4 DLMGQSIYEVTHPCDHSEVKSILSANHT 31
+++G + H D V+S H
Sbjct: 38 EMIGSFLKTFLHEEDQFLVESYFYNEHH 65
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator,
complex, LXXLL motif, transcriptional regulation; 2.2A
{Mus musculus} SCOP: d.110.3.8
Length = 132
Score = 40.3 bits (94), Expect = 6e-05
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 145 VPLSQTFLTKHSLDMKFTYADET-MEDFLGFNPDIFIAKSVFDFHHAQDS 193
+ ++F+TK K D + + + + K ++ F Q
Sbjct: 3 MTGVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGR 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.019
Identities = 33/213 (15%), Positives = 55/213 (25%), Gaps = 81/213 (38%)
Query: 5 LMGQSIYEV-----THPCD-----HS--E------VKSILSANHTEDIRAQRSVFIRLKC 46
LM ++ +E P D HS E + ++S E VF R
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS---IES--LVEVVFYR--- 1789
Query: 47 TLTSKGRNVNVKAATYKVIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQD 106
G +Q P + N +
Sbjct: 1790 ----------------------GMTMQVAVPRD--------ELGRSNYGMIAINPGRVAA 1819
Query: 107 KDDSEPEEEVGEKRRVVTEPSHCFVAIGEPIPHPANYDVPLSQTFL--TKHSLDMKFTYA 164
E + V E+ V + + V I NY+V Q +LD
Sbjct: 1820 SFSQEALQYVVER---VGKRTGWLVEI-------VNYNVENQQYVAAGDLRALDT----V 1865
Query: 165 DETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQ 197
+ +F+ + + D Q S ++
Sbjct: 1866 TNVL-NFIK-------LQKI-DIIELQKSLSLE 1889
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 29.5 bits (67), Expect = 0.37
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 155 HSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQD 192
D ++ LG++ + +S+++F D
Sbjct: 33 LDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFD 70
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium; 2.60A {Desulfitobacterium hafniense}
Length = 126
Score = 29.1 bits (66), Expect = 0.42
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 155 HSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
+ + + YA+ + LG+ + ++ + A +
Sbjct: 15 INREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAE 62
>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral
protein; 2.60A {Sars coronavirus} SCOP: c.66.1.48
d.294.1.2 PDB: 2ozk_A 2rhb_A
Length = 347
Score = 29.3 bits (65), Expect = 0.92
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 144 DVPLSQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAK---SVFDFHHA 190
L +T+ T+ F + DFL D FI + + F H
Sbjct: 188 IQQLPETYFTQSRDLEDFKPRSQMETDFLELAMDEFIQRYKLEGYAFEHI 237
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 29.2 bits (66), Expect = 1.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 71 LVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQ 105
+V+ Q + G+ L + N+ Q D T G AIQ
Sbjct: 310 IVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQ 344
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 29.0 bits (66), Expect = 1.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 71 LVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQ 105
+VQ+Q ++G +L + I Q D G AIQ
Sbjct: 312 IVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQ 346
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 71 LVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQ 105
+V+ Q +G+ + PQ + NQ D G A+Q
Sbjct: 328 IVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQ 362
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like
protein,haloarcula marismortui ATCC 430 structural
genomics, PSI-2; 2.65A {Haloarcula marismortui}
Length = 125
Score = 27.3 bits (61), Expect = 2.0
Identities = 7/48 (14%), Positives = 19/48 (39%)
Query: 155 HSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
+ + + +M LG +PD + + + ++ + A K+
Sbjct: 35 LTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKS 82
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
PGE; 2.49A {Geobacter sulfurreducens}
Length = 114
Score = 26.8 bits (60), Expect = 3.1
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 158 DMKFTYADETMEDFLGFNPDIFIAKSVFDFH 188
+M++ + G + S +D
Sbjct: 22 EMRYLAVSRRWREDYGLGDGDILGMSHYDIF 52
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG, TRA; 2.09A {Nostoc SP}
Length = 118
Score = 26.4 bits (59), Expect = 3.8
Identities = 3/48 (6%), Positives = 16/48 (33%)
Query: 155 HSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKN 202
+ +F Y ++ ++ + ++ ++ D + +
Sbjct: 29 LGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQK 76
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG,
structural genomics, center for structural genomics;
1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Length = 120
Score = 26.4 bits (59), Expect = 4.3
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 158 DMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFH 195
D ++ + I +S + + D F
Sbjct: 21 DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFE 58
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron,
receptor, binding protein, T protein; HET: SF8; 1.30A
{Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A*
3li2_A*
Length = 296
Score = 27.0 bits (60), Expect = 4.7
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 146 PLSQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNP 203
LS S +K Y E NP+ I + H +DS + ++
Sbjct: 196 ALSDDVTKGLSKYLKGPYLQLDTEHLADLNPERMI---IMTDHAKKDSAEFKKLQEDA 250
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure
initiativ midwest center for structural genomics; 2.78A
{Vibrio cholerae o1 biovar el tor}
Length = 152
Score = 26.5 bits (58), Expect = 5.4
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 158 DMKFTYADETMEDFLGFNPDIFIAKSVFDF 187
D +E E + F+ + K++ +
Sbjct: 41 DYVIVKVNEYFESRVIFDGETMQGKNILEL 70
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 26.6 bits (58), Expect = 6.5
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 115 EVGEKRRVVTEPSHCFVAIGEPIPHPAN----YDVPLSQTFLTKHSLDMKFTYADETMED 170
+ GE ++ +P + + + G P+N +++ L D + +
Sbjct: 98 KRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGE 157
Query: 171 F 171
Sbjct: 158 G 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.389
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,052,405
Number of extensions: 163519
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 43
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)