RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10704
         (211 letters)



>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator
           1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 109

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 149 QTFLTKHSLDMKFTYADETMEDFLGFNP-DIFIAKSVFDFHHAQDSFHIQNAFKNPC 204
           ++F+TK     K    D +     G    +  + K ++ F   Q             
Sbjct: 2   ESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQE 58



 Score = 24.2 bits (52), Expect = 8.3
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 4  DLMGQSIYEVTHPCDHSEVK 23
          DL+ + IY    P       
Sbjct: 32 DLVRKCIYAFFQPQGREPSY 51


>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas
           palustris [TaxId: 1076]}
          Length = 114

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 11/69 (15%)

Query: 4   DLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNVKAATYK 63
            L+   I         + +   L       I       IRL        R  N       
Sbjct: 47  SLLNVPIAHYLTAASAARLTHALHGGDPAAINP-----IRLDVVTPDGERAFNG------ 95

Query: 64  VIHCTGHLV 72
           ++H    +V
Sbjct: 96  ILHRHDSIV 104


>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 36.6 bits (83), Expect = 4e-04
 Identities = 23/60 (38%), Positives = 43/60 (71%)

Query: 148 SQTFLTKHSLDMKFTYADETMEDFLGFNPDIFIAKSVFDFHHAQDSFHIQNAFKNPCYSC 207
           S+TFL++HS+DMKFTY D+ + + +G++P+  + +S ++F+HA DS ++  + +N C   
Sbjct: 5   SKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKG 64


>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 118

 Score = 28.1 bits (62), Expect = 0.36
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 64  VIHCTGHLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQDKDDSEPEEEVGEKRRVV 123
            +H  G L        NG+     +D  +  S N  RG+ I+  D        GE     
Sbjct: 33  KVHYVGTL-------ENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 85

Query: 124 TEPSHCFVAIGEPIPHPAN----YDVPL 147
               + +   G P   P      ++V L
Sbjct: 86  IRSDYGYGDAGSPPKIPGGATLIFEVEL 113


>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr
          {Rhodospirillum centenum [TaxId: 34018]}
          Length = 110

 Score = 25.4 bits (55), Expect = 3.3
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 4  DLMGQSIYEVTHPCDHSEVKSILSANHTEDIRAQRSVFIRLKCTLTSKGRNVNV 57
           ++G++ +    PC +        +    D     ++  R       +   V V
Sbjct: 42 RVIGRNFFTEVAPCTNIPAF----SGRFMDGVTSGTLDARFDFVFDFQMAPVRV 91


>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
           subdomain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 267

 Score = 25.9 bits (55), Expect = 4.3
 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 1/41 (2%)

Query: 66  HCTG-HLVQNQTPASNGSTLMEPQDNIENQSDNTRRGSAIQ 105
             +G +L   Q   + G  +    D       N    S I 
Sbjct: 210 MVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEID 250


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 747,855
Number of extensions: 31440
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 11
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)