BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10707
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VCI5|DHSD_DROME Putative succinate dehydrogenase [ubiquinone] cytochrome b small
subunit, mitochondrial OS=Drosophila melanogaster
GN=CG10219 PE=1 SV=1
Length = 182
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 78/107 (72%)
Query: 24 SDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEV 83
S HT LWT+ER +SAGLLAVIPAA++ PS L+ + +S+V+H+HWG+EA+VVDY RP V
Sbjct: 71 SSHTLLWTVERIVSAGLLAVIPAAFIAPSQVLDALMAISVVIHTHWGVEAMVVDYMRPSV 130
Query: 84 VGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAIKSK 130
VG L K+ H+++ I+S+ TL GL I N G+ G K+ WAIK K
Sbjct: 131 VGNVLPKVAHIALIIISVATLGGLFYFIQNDVGLANGIKRFWAIKGK 177
>sp|A8WT26|DHSD_CAEBR Putative succinate dehydrogenase [ubiquinone] cytochrome b small
subunit, mitochondrial OS=Caenorhabditis briggsae
GN=sdhd-1 PE=3 SV=1
Length = 145
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 2 SPSLVKHFSTTQVQHDAAVHSK-SDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALV 60
+P L T +D A SK DH+ + +ER + G+L ++PA+Y + ++ L
Sbjct: 21 APRLSTIVRATSTLNDGA--SKVPDHSMHFKLERLWAVGMLPILPASYFIHGPVMDAVLT 78
Query: 61 VSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEG 120
V++ +H HWGI +V DYARP V+G A AK H+ VY+++ + LAGL++ N G+ +
Sbjct: 79 VALTLHIHWGIHGVVYDYARPYVIGEAAAKAAHIGVYLITGLLLAGLLHFNTNDVGITKA 138
Query: 121 TKKLWAI 127
+ ++++
Sbjct: 139 FELVFSL 145
>sp|Q6P355|DHSD_XENTR Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Xenopus tropicalis GN=sdhd PE=2 SV=1
Length = 152
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 11 TTQVQHDAAVHSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHW 69
T+Q+ H+ S ++ WT ER LS LL ++PAAYL P A++Y+L ++ +H HW
Sbjct: 39 TSQIHTSPNHHAGSKAASMHWTSERALSVALLGLLPAAYLYPGAAMDYSLAAALTLHGHW 98
Query: 70 GIEALVVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
G+ +V DY V G A K+ + S++ LS +T AGL + G+ + LW++
Sbjct: 99 GLGQVVTDY----VHGDAKIKMANTSLFALSALTFAGLCYFNYHDVGICKAVSMLWSL 152
>sp|Q6AZR3|DHSDA_XENLA Succinate dehydrogenase [ubiquinone] cytochrome b small subunit A,
mitochondrial OS=Xenopus laevis GN=sdhd-a PE=2 SV=1
Length = 152
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 12 TQVQHDAAVHSKSDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGI 71
T H AA + S H WT ER LS LL ++PAAYL P A++Y+L ++ +H HWG+
Sbjct: 44 TSQNHHAASKAASLH---WTSERALSVALLGLLPAAYLYPGAAVDYSLAAALTLHGHWGL 100
Query: 72 EALVVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
+V DY V G A K+ + S++ LS +T AGL + G+ + LW++
Sbjct: 101 GQVVTDY----VHGDAKIKLANTSLFALSALTFAGLCYFNYHDVGICKAVAMLWSL 152
>sp|O62215|DHSD_CAEEL Putative succinate dehydrogenase [ubiquinone] cytochrome b small
subunit, mitochondrial OS=Caenorhabditis elegans
GN=sdhd-1 PE=3 SV=1
Length = 145
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 64/103 (62%)
Query: 25 DHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVV 84
DH+ + +ER + G+L ++PA+Y + ++ L V++ +H HWGI +V DYARP V+
Sbjct: 43 DHSMHFKLERLWAVGMLPILPASYFIHGPVMDAVLTVALTLHIHWGIHGVVYDYARPYVI 102
Query: 85 GVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
G A AK H+ VY+++ + L L++ N G+ + + ++++
Sbjct: 103 GEAAAKAAHVGVYLITGLLLGALLHFNTNDVGITKAFELVFSL 145
>sp|Q6AZV0|DHSDB_XENLA Succinate dehydrogenase [ubiquinone] cytochrome b small subunit B,
mitochondrial OS=Xenopus laevis GN=sdhd-b PE=2 SV=1
Length = 152
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 11 TTQVQHDAAVHSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHW 69
T+Q+ H+ S ++ WT ER LS LL ++PAAYL P A++Y+L ++ +H HW
Sbjct: 39 TSQIHTSPNHHAGSKAASMHWTGERALSVALLGLLPAAYLYPGAAMDYSLAAALTLHGHW 98
Query: 70 GIEALVVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
G+ +V DY V G K+ + S++ LS +T AGL + G+ + LW++
Sbjct: 99 GLGQVVTDY----VHGETKIKMANTSLFALSALTFAGLCYFNYHDVGICKAVAMLWSL 152
>sp|Q68FN7|DHSDB_DANRE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit B,
mitochondrial OS=Danio rerio GN=sdhdb PE=2 SV=1
Length = 158
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 4 SLVKHFSTTQVQHD------AAVHSKSDH---------TTLWTIERFLSAGLLAVIPAAY 48
SL++ + Q HD A +H+ + T WT ER LS LL++ P AY
Sbjct: 24 SLIRPLAVQQKDHDCSYLISARIHATPSNYAGSGSKAATMHWTGERILSIALLSLAPVAY 83
Query: 49 LVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSIITLAGLM 108
PS A++Y+L ++ +H HWG+ +V DY V G A K+ + +++LS +T AGL
Sbjct: 84 FCPSPAVDYSLAAALTLHGHWGLGQVVTDY----VHGDAKIKMANAGLFVLSTVTFAGLC 139
Query: 109 NLILNGGGVVEGTKKLWA 126
+ G+ + LW+
Sbjct: 140 YFNYHDVGICKAVALLWS 157
>sp|Q5G2C6|DHSD_SHEEP Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Ovis aries GN=SDHD PE=2 SV=1
Length = 158
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 21 HSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYA 79
HS S +L WT ER +S LL +IPAAYL P A++Y+L ++ +HSHWGI +V DY
Sbjct: 55 HSGSKAASLHWTGERVVSVLLLGLIPAAYLNPCSAMDYSLAATLTLHSHWGIGQVVTDY- 113
Query: 80 RPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
V G A+ K + +LS T AGL + G+ + LW +
Sbjct: 114 ---VHGDAVQKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL 158
>sp|Q95123|DHSD_BOVIN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Bos taurus GN=SDHD PE=2 SV=2
Length = 158
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 21 HSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYA 79
HS S +L WT ER +S LL +IPAAYL P A++Y+L ++ +HSHWGI +V DY
Sbjct: 55 HSGSKAASLHWTGERVVSVLLLGLIPAAYLNPCSAMDYSLAATLTLHSHWGIGQVVTDY- 113
Query: 80 RPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
V G A+ K + +LS T AGL + G+ + LW +
Sbjct: 114 ---VHGDAVQKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL 158
>sp|P92507|DHSD_ASCSU Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Ascaris suum PE=1 SV=2
Length = 156
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%)
Query: 26 HTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVG 85
H TL+ IER+ +A ++ +IPAAY + ++ L +++ +H HWG+ +V DY RP V+G
Sbjct: 55 HGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLG 114
Query: 86 VALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
LA + YI + LAGL+ + G+ + +W +
Sbjct: 115 DTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL 156
>sp|Q9CXV1|DHSD_MOUSE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Mus musculus GN=Sdhd PE=2 SV=2
Length = 159
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 21 HSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYA 79
HS S +L WT ER +S LL +IPA YL P ++Y+L ++ +HSHWG+ +V DY
Sbjct: 56 HSGSKAASLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGLGQVVTDY- 114
Query: 80 RPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
V G L K + LS +T AGL + G+ LW +
Sbjct: 115 ---VHGDTLPKAARAGLLALSALTFAGLCYFNYHDVGICRAVAMLWKL 159
>sp|Q6DGM2|DHSDA_DANRE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit A,
mitochondrial OS=Danio rerio GN=sdhda PE=2 SV=1
Length = 154
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 20 VHSKSDHTTL-----WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEAL 74
+H+ S T + WT ER ++ LL + PAAYL P ++Y++ ++ MH HWGI +
Sbjct: 46 IHTASSSTGISASQHWTGERVMTLVLLGMAPAAYLCPGPVVDYSIAAALTMHGHWGIGQV 105
Query: 75 VVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLW 125
+ DY E V + LAK+ +++LS T GL N G+ + LW
Sbjct: 106 LTDYVHGE-VKIKLAKV---GIFLLSTATFFGLCYFNYNDVGLCKAVVMLW 152
>sp|A5GZW8|DHSD_PIG Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Sus scrofa GN=SDHD PE=1 SV=2
Length = 159
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 16 HDAAVHSKSDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALV 75
H A+ + S H WT ER +S LL ++PAAYL P A++Y+L ++ +H HWGI +V
Sbjct: 55 HQASSKAASLH---WTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVV 111
Query: 76 VDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
DY R G AL K+ + LS T AGL + G+ + LW +
Sbjct: 112 TDYVR----GDALQKVAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL 159
>sp|Q6PCT8|DHSD_RAT Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Rattus norvegicus GN=Sdhd PE=2 SV=1
Length = 159
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 30 WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALA 89
WT ER +S LL +IPA YL P ++Y+L ++ +HSHWGI +V DY V G AL
Sbjct: 66 WTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGIGQVVTDY----VHGDALQ 121
Query: 90 KIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
K + +S +T AGL + G+ LW +
Sbjct: 122 KATKAGLLAVSALTFAGLCYFNYHDVGICRAVAMLWKL 159
>sp|O14521|DHSD_HUMAN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Homo sapiens GN=SDHD PE=1 SV=1
Length = 159
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 21 HSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYA 79
HS S +L WT ER +S LL ++PAAYL P A++Y+L ++ +H HWG+ +V DY
Sbjct: 56 HSGSKAASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY- 114
Query: 80 RPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
V G AL K + LS +T AGL + G+ + LW +
Sbjct: 115 ---VHGDALQKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL 159
>sp|Q5RC29|DHSD_PONAB Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Pongo abelii GN=SDHD PE=2 SV=1
Length = 159
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 21 HSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYA 79
HS S +L WT ER +S LL ++PAAYL P A++Y+L ++ +H HWG+ +V DY
Sbjct: 56 HSGSKAASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAATLTLHGHWGLGQVVTDY- 114
Query: 80 RPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
V G A K + LS +T AGL + G+ + LW +
Sbjct: 115 ---VHGDASQKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL 159
>sp|Q9P7X0|DHSD_SCHPO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sdh4 PE=2 SV=2
Length = 159
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 6 VKHFSTTQVQ--------------HDAAV---HSKSDHTTLWTIERFLSAGLLA--VIPA 46
VK FSTT V +DAAV HSK + W ER ++ ++ +IP
Sbjct: 20 VKSFSTTSVAKIFPPPPQTIKGTVNDAAVFPHHSKLHGSYHWDFERIIAIAMVPQVMIPL 79
Query: 47 AYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSIITLAG 106
++ AL +++ H+H G E+ V+DY P L+ + H + +++TL G
Sbjct: 80 FTGTSHPLMDAALACTLITHAHLGFESCVIDYF-PARRFKKLSPLMHWILRGCTVLTLIG 138
Query: 107 LMNLILNGGGVVEGTKKLW 125
+ N G+ EG KKLW
Sbjct: 139 VYEFNTNDIGLTEGIKKLW 157
>sp|Q5ZIS0|DHSD_CHICK Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Gallus gallus GN=SDHD PE=1 SV=1
Length = 157
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 21 HSKSDHTTL-WTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYA 79
H S +L WT ER +SA LL ++PAAYL P A++Y+L ++ +H HWG+ ++ DY
Sbjct: 54 HGSSKAASLHWTSERAVSALLLGLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDY- 112
Query: 80 RPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
V G K+ + +Y+LS IT GL G+ + LW+I
Sbjct: 113 ---VHGDTPIKVANTGLYVLSAITFTGLCYFNYYDVGICKAVAMLWSI 157
>sp|Q06236|YL164_YEAST Putative succinate dehydrogenase [ubiquinone] cytochrome b small
subunit YLR164W, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YLR164W PE=1
SV=1
Length = 168
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 21 HSKSDHTTLWTIERFLSAGLLAVI--PAAYLVP-SVALEYALVVSIVMHSHWGIEALVVD 77
S++ + W +ER LS +L +I P P S + L + ++ H H G ++ ++D
Sbjct: 52 ESRAQGSYHWIVERGLSLAVLPLIAVPLVTTGPISTFTDTFLSLVLLGHCHIGFQSCIID 111
Query: 78 YARPEVVGVALAKIFHLSVYILSI---ITLAGLMNLILNGGGVVEGTKKLWAIK 128
Y V G K+ H ++Y+LS+ ++ G+ L G++ K LW K
Sbjct: 112 YISERVYG----KVHHYAMYLLSLGSFLSFVGIYKLESQEAGLIASLKSLWDNK 161
>sp|Q7SGY6|DHSD_NEUCR Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=B18P24.060 PE=3 SV=1
Length = 166
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 30 WTIERFLSAGLLAVIPAAYLVPSV--ALEYALVVSIVMHSHWGIEALVVDYARPEVVGVA 87
WT +R ++AGL+ + A + S+ ++ L +I++HSH G ++VDY + V A
Sbjct: 68 WTFDRVVAAGLIPLTVAPFAAGSLNPTMDAVLAATILIHSHTGFGNIIVDYVPSKRVPKA 127
Query: 88 LAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLW 125
K+F + +++ L G+ E K++W
Sbjct: 128 R-KVFTWGLNAATVLVGLALYEFETTDVGLTETIKRVW 164
>sp|P28266|NODL_RHIME Nodulation protein L OS=Rhizobium meliloti (strain 1021) GN=nodL
PE=3 SV=1
Length = 183
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 24 SDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYAR 80
D W + FL GL V P A + P +Y +SI H++ +++D A+
Sbjct: 41 GDSAEQWHL--FLREGLGEVGPGAVIRPPFHCDYGFNISIGAHAYMNFNCVILDVAK 95
>sp|Q9R9I9|MYCC_BACIU Mycosubtilin synthase subunit C OS=Bacillus subtilis GN=mycC PE=3
SV=1
Length = 2609
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 8 HFSTTQVQHDAAVHSKSDHTTLWTIERFLSAGLLAVIP-AAYLVPSVALEYALVVSIVMH 66
H S + ++HDA S S HT+L + + L +A+IP A YLV V + ++H
Sbjct: 28 HMSDSALEHDALNTSNSIHTSLRS-DVSLRIMTMAIIPMAVYLVLLVG------IKCLLH 80
Query: 67 SHWGIEALVV 76
+ G E+++V
Sbjct: 81 KYTGEESIIV 90
>sp|Q8BQM4|HEAT3_MOUSE HEAT repeat-containing protein 3 OS=Mus musculus GN=Heatr3 PE=2
SV=1
Length = 679
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 41 LAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKI 91
L V+ +A L P ++EY L+ ++V + W ++ ++ ++ E++ L +
Sbjct: 229 LRVLESALLCPVASMEYILLKTLVAGTIWNLKDIIPSKSQAEIINAILGAL 279
>sp|Q6GUG4|P2Y13_RAT P2Y purinoceptor 13 OS=Rattus norvegicus GN=P2ry13 PE=2 SV=1
Length = 336
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 74 LVVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAIKS 129
+VV + + V A AKI +S+++L + L L N+ILN KK ++KS
Sbjct: 128 IVVPFRKTFVKKTAFAKIVSISIWLL--MFLISLPNMILNKEATASTVKKCASLKS 181
>sp|P40487|DPH1_YEAST Diphthamide biosynthesis protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPH1 PE=1 SV=1
Length = 425
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 26 HTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVV 76
H T+W I ++ + + +P L+ Y+L++S ++ G+E LV+
Sbjct: 81 HKTVWNIRKYNAKRIALQMPEGLLI------YSLIISDILEQFCGVETLVM 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,324,039
Number of Sequences: 539616
Number of extensions: 1582826
Number of successful extensions: 3369
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3333
Number of HSP's gapped (non-prelim): 35
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)