Query psy10707
Match_columns 130
No_of_seqs 100 out of 238
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:34:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4097|consensus 100.0 3.9E-45 8.5E-50 283.6 11.1 106 24-130 65-173 (178)
2 PF05328 CybS: CybS; InterPro 100.0 1.5E-44 3.3E-49 269.7 5.8 104 22-126 27-132 (132)
3 cd03496 SQR_TypeC_CybS SQR cat 100.0 2.2E-41 4.8E-46 243.8 11.4 102 24-126 1-104 (104)
4 PRK09488 sdhD succinate dehydr 99.4 3.4E-12 7.3E-17 93.6 8.0 61 22-82 8-87 (115)
5 cd03495 SQR_TypeC_SdhD_like Su 99.3 3.1E-12 6.6E-17 91.2 7.2 73 28-104 1-92 (100)
6 COG2142 SdhD Succinate dehydro 99.1 1.3E-10 2.9E-15 85.7 6.8 72 24-99 11-101 (117)
7 TIGR02968 succ_dehyd_anc succi 99.1 3.4E-10 7.4E-15 80.5 7.2 74 24-101 2-94 (105)
8 cd03494 SQR_TypeC_SdhD Succina 99.0 1.6E-09 3.4E-14 77.1 6.7 54 29-82 1-73 (99)
9 cd03500 SQR_TypeA_SdhD_like Su 98.7 8.1E-08 1.8E-12 67.9 7.2 79 26-108 1-102 (106)
10 cd03493 SQR_QFR_TM Succinate:q 98.2 6.8E-06 1.5E-10 54.9 5.9 74 32-107 2-96 (98)
11 PF01127 Sdh_cyt: Succinate de 97.2 0.0016 3.4E-08 45.9 6.6 55 24-78 17-94 (121)
12 cd03501 SQR_TypeA_SdhC_like Su 97.2 0.002 4.3E-08 44.9 6.7 54 29-82 3-77 (101)
13 cd03499 SQR_TypeC_SdhC Succina 90.6 1.8 4E-05 30.8 7.2 75 27-103 16-111 (117)
14 TIGR02970 succ_dehyd_cytB succ 86.0 5.3 0.00011 28.8 7.1 54 26-79 17-91 (120)
15 PRK13553 fumarate reductase cy 65.9 56 0.0012 27.3 8.5 85 23-107 117-226 (258)
16 PF03839 Sec62: Translocation 43.6 80 0.0017 25.8 5.9 38 91-128 158-200 (224)
17 PRK09487 sdhC succinate dehydr 43.5 1.3E+02 0.0029 22.2 6.8 79 29-108 26-127 (129)
18 cd03497 SQR_TypeB_1_TM Succina 39.7 76 0.0017 25.1 5.1 54 26-79 89-174 (207)
19 COG1457 CodB Purine-cytosine p 35.7 1.4E+02 0.0031 26.7 6.6 50 31-80 154-218 (442)
20 PF10110 GPDPase_memb: Membran 29.3 39 0.00084 24.9 1.8 64 65-128 65-128 (149)
21 PRK10927 essential cell divisi 28.9 66 0.0014 27.8 3.3 23 93-115 36-58 (319)
22 KOG2927|consensus 28.4 51 0.0011 29.0 2.6 38 91-128 237-279 (372)
23 COG5232 SEC62 Preprotein trans 27.1 29 0.00063 28.8 0.8 97 23-129 135-239 (259)
24 PRK10910 hypothetical protein; 25.2 2.5E+02 0.0055 19.9 5.3 37 31-67 4-45 (89)
25 COG3833 MalG ABC-type maltose 23.1 1.8E+02 0.0039 24.8 4.8 73 21-98 176-256 (282)
26 cd03498 SQR_TypeB_2_TM Succina 22.6 3.8E+02 0.0082 21.0 7.1 79 25-106 88-197 (209)
27 PF04819 DUF716: Family of unk 21.4 3.4E+02 0.0075 20.0 6.2 57 23-80 30-87 (137)
28 PLN00180 NDF6 (NDH-dependent f 20.0 31 0.00068 27.3 -0.3 13 23-35 132-144 (180)
No 1
>KOG4097|consensus
Probab=100.00 E-value=3.9e-45 Score=283.63 Aligned_cols=106 Identities=44% Similarity=0.834 Sum_probs=103.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhCc---hHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhHHHHHHHHHHHHH
Q psy10707 24 SDHTTLWTIERFLSAGLLAVIPAAYLVP---SVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILS 100 (130)
Q Consensus 24 ~~gs~hW~~ERi~s~aLlpL~~~~~~~p---~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~~k~a~~~l~~~S 100 (130)
.+|||||++||++|++|+||+|++++++ ||+||++|++++++|+|||||+||+||+|+|+|| ++||+|+++|+++|
T Consensus 65 ~~~Syhw~~ERi~s~~llpl~paa~~~~~p~s~~mDa~La~~l~~h~hwGf~scViDYi~~~v~g-~~~k~A~~~L~~~S 143 (178)
T KOG4097|consen 65 LAGSYHWTVERIVSVGLLPLLPAAYLTTGPISPAMDASLAVALLLHCHWGFESCVIDYIRPRVYG-VLHKLAHYGLYLGS 143 (178)
T ss_pred cccchhhhHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHhhcccceEEEeeeCcchhc-hhHHHHHHHHHHHH
Confidence 5899999999999999999999999984 7899999999999999999999999999999999 99999999999999
Q ss_pred HHHHhhheeEeecCCchHHHHHhhccccCC
Q psy10707 101 IITLAGLMNLILNGGGVVEGTKKLWAIKSK 130 (130)
Q Consensus 101 ~~tl~GLy~f~t~dvGi~~~vk~lW~~~~~ 130 (130)
.++++|+|+|||||+|++++||++|+.|+|
T Consensus 144 ~Lsl~Gly~f~tndvGl~~~vk~lW~~~~~ 173 (178)
T KOG4097|consen 144 VLSLGGLYEFETNDVGLVKGVKKLWDSKGK 173 (178)
T ss_pred HHhhhheeEEeecchHHHHHHHHHHccCcc
Confidence 999999999999999999999999999976
No 2
>PF05328 CybS: CybS; InterPro: IPR007992 This family consists of several eukaryotic succinate dehydrogenase [ubiquinone] cytochrome B small subunit, mitochondrial precursor (CybS) proteins. SDHD encodes the small subunit (cybS) of cytochrome b in succinate-ubiquinone oxidoreductase (mitochondrial complex II). Mitochondrial complex II is involved in the Krebs cycle and in the aerobic electron transport chain. It contains four proteins. The catalytic core consists of a flavoprotein and an iron-sulphur protein; these proteins are anchored to the mitochondrial inner membrane by the large subunit of cytochrome b (cybL) and cybS, which together comprise the haem-protein cytochrome b. Mutations in the SDHD gene can lead to hereditary paraganglioma, characterised by the development of benign, vascularised tumours in the head and neck [].; GO: 0005506 iron ion binding, 0020037 heme binding, 0006099 tricarboxylic acid cycle, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 3AE7_D 3AEB_D 3AEC_D 3AE6_D 3AE4_D 3AE3_D 3AEG_D 3SFD_D 3AE9_D 1ZOY_D ....
Probab=100.00 E-value=1.5e-44 Score=269.74 Aligned_cols=104 Identities=40% Similarity=0.677 Sum_probs=95.6
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhHHHHHHHHHHHH
Q psy10707 22 SKSDHTTLWTIERFLSAGLLAVIPAAYLV--PSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYIL 99 (130)
Q Consensus 22 ~~~~gs~hW~~ERi~s~aLlpL~~~~~~~--p~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~~k~a~~~l~~~ 99 (130)
++.|||+||++||++|++|+||+|++++. +|+++|++|++++++|+|||||+||+||+|+|+|| +++|+|+++++++
T Consensus 27 ~~~~gs~hW~~ER~~a~~Llpl~~~~~~~gs~~~~~D~~La~~l~~H~h~G~~svI~DYip~~v~~-~~~~~a~~~l~~~ 105 (132)
T PF05328_consen 27 SKSHGSYHWKFERIVAAALLPLIPAAFASGSPNPVMDYLLAVALPLHSHIGFESVITDYIPKRVFG-KLHKLAMWLLYAG 105 (132)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHHHHHHHHHHHHHHS-----S-HHHHHHHHHHHHH
T ss_pred CCCCcceeeHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc-hHHHHHHHHHHHH
Confidence 67799999999999999999999999999 79999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhheeEeecCCchHHHHHhhcc
Q psy10707 100 SIITLAGLMNLILNGGGVVEGTKKLWA 126 (130)
Q Consensus 100 S~~tl~GLy~f~t~dvGi~~~vk~lW~ 126 (130)
|+++++|||+||+||+||+++||++|+
T Consensus 106 s~~~l~Gl~~~~~~d~Gi~~~vk~lW~ 132 (132)
T PF05328_consen 106 SALTLAGLYYFNTNDVGITEAVKKLWK 132 (132)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHCT
T ss_pred HHHHHHHheEEEecCccHHHHHHHHhC
Confidence 999999999999999999999999996
No 3
>cd03496 SQR_TypeC_CybS SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. CybS and CybL are the two transmembrane proteins of eukaryotic SQRs. They contain heme and quinone binding sites. CybS is the eukaryotic homolog of the bacterial SdhD subunit. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the transmembrane subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of
Probab=100.00 E-value=2.2e-41 Score=243.80 Aligned_cols=102 Identities=37% Similarity=0.684 Sum_probs=98.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhCc--hHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhHHHHHHHHHHHHHH
Q psy10707 24 SDHTTLWTIERFLSAGLLAVIPAAYLVP--SVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSI 101 (130)
Q Consensus 24 ~~gs~hW~~ERi~s~aLlpL~~~~~~~p--~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~~k~a~~~l~~~S~ 101 (130)
.+||+||+.||++|++|+||+|++++.+ +|++|.+++++++.|+|+|||+||+||+||| +|+.+++++++++.++|+
T Consensus 1 ~~Gs~Hw~~eR~~avaLlpL~~~~~~~~~~~pil~~ll~~~~~~H~~~G~q~vIeDYv~~~-~~~~~~~~a~~~~~~~s~ 79 (104)
T cd03496 1 LHGSYHWTFERILAVSLLPLTPAAFFAPGLSPVMDAALAAALLLHSHWGFESCIIDYVPKR-VGGKLHKLAMYLLYAGSA 79 (104)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcceeeeeecCCCc-ccchHHHHHHHHHHHHHH
Confidence 3799999999999999999999999988 9999999999999999999999999999999 456999999999999999
Q ss_pred HHHhhheeEeecCCchHHHHHhhcc
Q psy10707 102 ITLAGLMNLILNGGGVVEGTKKLWA 126 (130)
Q Consensus 102 ~tl~GLy~f~t~dvGi~~~vk~lW~ 126 (130)
++++||||||+||+|++++||++|+
T Consensus 80 ~~l~Gl~~~~~~d~Gi~~~v~~lW~ 104 (104)
T cd03496 80 LSLAGLYYFNTNDVGLTKAVKKLWS 104 (104)
T ss_pred HHHHHheeeeecCccHHHHHHHHhC
Confidence 9999999999999999999999996
No 4
>PRK09488 sdhD succinate dehydrogenase cytochrome b556 small membrane subunit; Provisional
Probab=99.36 E-value=3.4e-12 Score=93.60 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=53.1
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHhh------------------hCc-hHHHHHHHHHHHHHHHHhhccceeeeccCCc
Q psy10707 22 SKSDHTTLWTIERFLSAGLLAVIPAAY------------------LVP-SVALEYALVVSIVMHSHWGIEALVVDYARPE 82 (130)
Q Consensus 22 ~~~~gs~hW~~ERi~s~aLlpL~~~~~------------------~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~ 82 (130)
.+.+|.+||+.||++|++|+|++++.+ ..| +.++..++.++...|...|+|.+|+||+++.
T Consensus 8 ~~~~G~~~w~~QRvTAv~l~~l~~~~v~~~~~~~g~~y~~~~~~f~~p~~ai~~ll~l~~~~~H~~iGmq~VieDYV~~~ 87 (115)
T PRK09488 8 LGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWRGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPL 87 (115)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHcchHHHHHccCch
Confidence 466899999999999999999999876 123 5778888889999999999999999999953
No 5
>cd03495 SQR_TypeC_SdhD_like Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is
Probab=99.35 E-value=3.1e-12 Score=91.15 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHHHHHHHhh------------------hCc-hHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhH
Q psy10707 28 TLWTIERFLSAGLLAVIPAAY------------------LVP-SVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVAL 88 (130)
Q Consensus 28 ~hW~~ERi~s~aLlpL~~~~~------------------~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~ 88 (130)
.||+.||+++++|+|++++.+ ..| +.++|.++..+...|...|+|.+++||+++ +.+
T Consensus 1 ~~W~~qRvTav~L~~l~~~~v~~~~~~~~~~y~~~~~~~~~p~~~i~~~l~l~~~~~H~~~Gm~~IieDYV~~----~~~ 76 (100)
T cd03495 1 HHWWAQRVTAVALVPLVLWFVFSVALLLGASYAEVVAWLAHPFNAILLILTLVSAFYHARLGMQVVIEDYVHS----EGL 76 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----hHH
Confidence 499999999999999999766 223 678999999999999999999999999995 356
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10707 89 AKIFHLSVYILSIITL 104 (130)
Q Consensus 89 ~k~a~~~l~~~S~~tl 104 (130)
+.....+....+.++.
T Consensus 77 R~~l~~~~~~~~~~~~ 92 (100)
T cd03495 77 RLALIIAVKLFAIATA 92 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777666665544
No 6
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=99.14 E-value=1.3e-10 Score=85.68 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=58.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhh------------------hCc-hHHHHHHHHHHHHHHHHhhccceeeeccCCcch
Q psy10707 24 SDHTTLWTIERFLSAGLLAVIPAAY------------------LVP-SVALEYALVVSIVMHSHWGIEALVVDYARPEVV 84 (130)
Q Consensus 24 ~~gs~hW~~ERi~s~aLlpL~~~~~------------------~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~ 84 (130)
.+|++||.+||++++.|+|++.+-+ ..| +.++|.++..+..+|...|++.||+||++++
T Consensus 11 r~G~~~~l~qRvTav~Lv~l~~~~l~~~l~~~~~~y~~~~~~~s~p~~~v~~lL~l~~~l~H~~~Glr~Ii~DYi~~~-- 88 (117)
T COG2142 11 RYGSHDWLLQRVTAVILVLLVIWHLYFLLTWLNATYAAWVAFLANPFWKVFLLLLLVAALIHAWNGLRVIIEDYIKPE-- 88 (117)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--
Confidence 3899999999999999999998877 223 5789999999999999999999999999976
Q ss_pred hhhHHHHHHHHHHHH
Q psy10707 85 GVALAKIFHLSVYIL 99 (130)
Q Consensus 85 gp~~~k~a~~~l~~~ 99 (130)
+.++....++...
T Consensus 89 --~~r~~l~~~~~~~ 101 (117)
T COG2142 89 --KLRLALQILLVLA 101 (117)
T ss_pred --HHHHHHHHHHHHH
Confidence 3444444444333
No 7
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex.
Probab=99.10 E-value=3.4e-10 Score=80.47 Aligned_cols=74 Identities=14% Similarity=0.290 Sum_probs=58.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhh------------------Cc-hHHHHHHHHHHHHHHHHhhccceeeeccCCcch
Q psy10707 24 SDHTTLWTIERFLSAGLLAVIPAAYL------------------VP-SVALEYALVVSIVMHSHWGIEALVVDYARPEVV 84 (130)
Q Consensus 24 ~~gs~hW~~ERi~s~aLlpL~~~~~~------------------~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~ 84 (130)
.+|.+||..||+++++|+|++++.+. .| +.+++.++..+...|...|++.+++||++.
T Consensus 2 ~~G~~~w~~~RiSgv~L~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~~~l~~~~~~~H~~~Glr~ii~Dy~~~--- 78 (105)
T TIGR02968 2 RSGLRDWLLQRVTAVVLALYTIFLIGFLLALPGLTYEAWRALFAHPWMKIFTLLALLALLYHAWIGMRVVLEDYVKP--- 78 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhHHHHHHHHccc---
Confidence 47899999999999999999997661 12 477889999999999999999999999974
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy10707 85 GVALAKIFHLSVYILSI 101 (130)
Q Consensus 85 gp~~~k~a~~~l~~~S~ 101 (130)
...+..+..++.....
T Consensus 79 -~~~r~~l~~~~~~~~~ 94 (105)
T TIGR02968 79 -EGLRLVLQVLIILFLV 94 (105)
T ss_pred -hHHHHHHHHHHHHHHH
Confidence 3555565555544443
No 8
>cd03494 SQR_TypeC_SdhD Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the high potential quinine, ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. SdhD and SdhC are the two transmembrane proteins of bacterial SQRs. They contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD an
Probab=98.98 E-value=1.6e-09 Score=77.14 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHhh------------------hCc-hHHHHHHHHHHHHHHHHhhccceeeeccCCc
Q psy10707 29 LWTIERFLSAGLLAVIPAAY------------------LVP-SVALEYALVVSIVMHSHWGIEALVVDYARPE 82 (130)
Q Consensus 29 hW~~ERi~s~aLlpL~~~~~------------------~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~ 82 (130)
||+.||+++++|+|++|+.+ ..| +.++..++..+...|...|++.+++||+++.
T Consensus 1 ~w~~qRiSav~L~~l~~~~v~~~~~~~~~~y~~~~~~~~~p~~~i~~~l~~~~~~~H~~~Glr~vi~DYv~~~ 73 (99)
T cd03494 1 DWLVQRVTAVIMALYTIFLVGFLLASPPLTYEAWSGLFSSLWMKIFTLLALLALLLHAWIGLWDILTDYVKPA 73 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 89999999999999999765 123 5678888899999999999999999999853
No 9
>cd03500 SQR_TypeA_SdhD_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial
Probab=98.68 E-value=8.1e-08 Score=67.91 Aligned_cols=79 Identities=18% Similarity=0.390 Sum_probs=59.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhh--------C-------------c-hHHHHHHHHHHHHHHHHhhccceeeeccCCcc
Q psy10707 26 HTTLWTIERFLSAGLLAVIPAAYL--------V-------------P-SVALEYALVVSIVMHSHWGIEALVVDYARPEV 83 (130)
Q Consensus 26 gs~hW~~ERi~s~aLlpL~~~~~~--------~-------------p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~ 83 (130)
++..|..||++++.|+|++++-+. . | +.+++.++..+...|...|++.+++||+++
T Consensus 1 ~~~~w~~qRiTgv~L~~~l~~hi~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~lll~~~~~H~~~Glr~il~Dy~~~-- 78 (106)
T cd03500 1 ESLAWLFQRITGVFLVFLLAGHFWVQHMDNGGDVIDFAFVANRLASPLWKVWDLLLLVLALLHGGNGLRNILLDYVRR-- 78 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhHHHHHHHHccC--
Confidence 356899999999999999997663 1 1 347888999999999999999999999985
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHhhhe
Q psy10707 84 VGVALAKIFHLSVYILSII-TLAGLM 108 (130)
Q Consensus 84 ~gp~~~k~a~~~l~~~S~~-tl~GLy 108 (130)
+..++.++....+.+++ .+.|++
T Consensus 79 --~~~r~~~~~~~~~~~~~~~~~g~~ 102 (106)
T cd03500 79 --PRLRRAVKGLLYVAGLLLIVLGTY 102 (106)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665554444 334443
No 10
>cd03493 SQR_QFR_TM Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR, also called succinate dehydrogenase or Complex II, is part of the citric acid cycle and the aerobic respiratory chain, while QFR is involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQRs may reduce either high or low potential quinones while QFRs oxidize only low potential quinols. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit(s) containing the electron donor/acceptor (quinol or quinone). The reversible reduction of
Probab=98.15 E-value=6.8e-06 Score=54.90 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhhC--------------------c-hHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhHHH
Q psy10707 32 IERFLSAGLLAVIPAAYLV--------------------P-SVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAK 90 (130)
Q Consensus 32 ~ERi~s~aLlpL~~~~~~~--------------------p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~~k 90 (130)
.||++++.|++++++.+.. | ..+++.++..+..+|...|++.++.||.+.. .++..+
T Consensus 2 ~~Ritgv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~Gir~i~~D~~~~~--~~~~~~ 79 (98)
T cd03493 2 LHRITGVALLLFLPLHLLGLLALLGGPYAFAEVVAFLSSPLGKLLYLLLLLALLYHALNGIRHLIWDYGKGL--ELKLRK 79 (98)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhHHHHHHHccccC--CHHHHH
Confidence 5899999999998876521 2 4779999999999999999999999999864 345666
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy10707 91 IFHLSVYILSIITLAGL 107 (130)
Q Consensus 91 ~a~~~l~~~S~~tl~GL 107 (130)
...+...+.+++....+
T Consensus 80 ~~~~~~~~~~~~~~~~~ 96 (98)
T cd03493 80 ALGYAVLALSVLLTVLL 96 (98)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777665543
No 11
>PF01127 Sdh_cyt: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; InterPro: IPR000701 This entry includes the transmembrane subunit from both succinate dehydrogenase and fumarate reductase complexes. Fumarate reductase couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, in a reaction opposite to that catalysed by the related complex II of the respiratory chain (succinate dehydrogenase) []. Three protein subunits contain the fumarate reductase complex. Subunit A contains the site of fumarate reduction and a covalently bound flavin adenine dinucleotide prosthetic group. Subunit B contains three iron-sulphur centres. The menaquinol-oxidizing subunit C consists of five membrane-spanning, primarily helical segments and binds two haem b molecules []. Succinate dehydrogenase (SDH) is a membrane-bound complex of two main components: a membrane-extrinsic component composed of an FAD-binding flavoprotein and an iron-sulphur protein, and a hydrophobic component composed of a cytochrome b and a membrane anchor protein. The cytochrome b component is a mono-haem transmembrane protein [, , ] belonging to a family that includes: Cytochrome b-556 from bacterial SDH (gene sdhC). Cytochrome b560 from the mammalian mitochondrial SDH complex, which is encoded in the mitochondrial genome of some algae and in the plant Marchantia polymorpha. Cytochrome b from yeast mitochondrial SDH complex (gene SDH3 or CYB3). Protein cyt-1 from Caenorhabditis elegans. These cytochromes are proteins of about 130 residues that comprise three transmembrane regions. There are two conserved histidines which may be involved in binding the haem group.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors; PDB: 2WDQ_H 1NEN_D 2WP9_L 2WDV_H 2ACZ_D 2WS3_L 2WU2_H 2WDR_D 2WU5_H 1NEK_D ....
Probab=97.20 E-value=0.0016 Score=45.90 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=41.5
Q ss_pred CCCcchhHHHHHHHHHHHH-HHHHhh-----h----------------Cc-hHHHHHHHHHHHHHHHHhhccceeeec
Q psy10707 24 SDHTTLWTIERFLSAGLLA-VIPAAY-----L----------------VP-SVALEYALVVSIVMHSHWGIEALVVDY 78 (130)
Q Consensus 24 ~~gs~hW~~ERi~s~aLlp-L~~~~~-----~----------------~p-~~v~D~~La~~l~~H~h~G~~svI~DY 78 (130)
..++.+|..+|++++.|++ ...... . .| ..+...++..+..+|...|++.+++|+
T Consensus 17 ~~~~~~~~~qRiTgi~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~Gir~il~D~ 94 (121)
T PF01127_consen 17 HSGTWAWILQRITGIILLLLFLHLHIWFLLSALGGGPISYDEVVAFFSSPFWAILYFLLLVAFFFHALNGIRHILEDW 94 (121)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4788999999999999999 333221 0 11 234557777888889999999999996
No 12
>cd03501 SQR_TypeA_SdhC_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacteria
Probab=97.16 E-value=0.002 Score=44.85 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHhh--------------------hCc-hHHHHHHHHHHHHHHHHhhccceeeeccCCc
Q psy10707 29 LWTIERFLSAGLLAVIPAAY--------------------LVP-SVALEYALVVSIVMHSHWGIEALVVDYARPE 82 (130)
Q Consensus 29 hW~~ERi~s~aLlpL~~~~~--------------------~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~ 82 (130)
-|..+|++.+.++..++.-+ ..| ..+++.++..++.+|.-.|++.++.||....
T Consensus 3 ~~~lhRitGi~L~~fl~~hl~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~l~~~~~~~H~~~Gir~~~~d~g~~~ 77 (101)
T cd03501 3 AWVLHRITGVVILFYLFLHVLDLSSLRRGPETYNAVIATYKSPIFKLGEFGLVAAVVFHALNGIRLILVDFGSGG 77 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 48999999999998877543 112 3567899999999999999999999998754
No 13
>cd03499 SQR_TypeC_SdhC Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein a
Probab=90.59 E-value=1.8 Score=30.76 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=50.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhh-------Cc--------------hHHHHHHHHHHHHHHHHhhccceeeeccCCcchh
Q psy10707 27 TTLWTIERFLSAGLLAVIPAAYL-------VP--------------SVALEYALVVSIVMHSHWGIEALVVDYARPEVVG 85 (130)
Q Consensus 27 s~hW~~ERi~s~aLlpL~~~~~~-------~p--------------~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~g 85 (130)
+.-+.++|++.+.|.-.++.... .| ..++...+..++.+|.--|+..++.||.... .
T Consensus 16 ~~~Si~hRiSGv~L~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGiRhll~D~g~~~--~ 93 (117)
T cd03499 16 AILSILHRITGVALFLGLPLLLWWLLASLSSPESFESVSALLGSWLGKLVLFGLTWALFYHLLNGIRHLIWDLGKGL--E 93 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHccccC--c
Confidence 34567899999888665554431 11 2457888899999999999999999998754 3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10707 86 VALAKIFHLSVYILSIIT 103 (130)
Q Consensus 86 p~~~k~a~~~l~~~S~~t 103 (130)
++-.+..-+...+++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (117)
T cd03499 94 LKTVYKSGYAVLVLSVVL 111 (117)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 14
>TIGR02970 succ_dehyd_cytB succinate dehydrogenase, cytochrome b556 subunit. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhC, the cytochrome b subunit, called b556 in bacteria and b560 in mitochondria. SdhD (see TIGR02968) is called the hydrophobic membrane anchor subunit, although both SdhC and SdhD participate in anchoring the complex. In some bacteria, this cytochrome b subunit is replaced my a member of the cytochrome b558 family (see TIGR02046).
Probab=85.95 E-value=5.3 Score=28.78 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=40.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHhh---h----Cc--------------hHHHHHHHHHHHHHHHHhhccceeeecc
Q psy10707 26 HTTLWTIERFLSAGLLAVIPAAY---L----VP--------------SVALEYALVVSIVMHSHWGIEALVVDYA 79 (130)
Q Consensus 26 gs~hW~~ERi~s~aLlpL~~~~~---~----~p--------------~~v~D~~La~~l~~H~h~G~~svI~DYv 79 (130)
.+.-|..+|++.+.|.-.+++-+ . .| ..+++..+..++.+|.--|+..++.|.-
T Consensus 17 ~~~~silhRiTGv~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGiRhl~~D~g 91 (120)
T TIGR02970 17 TAILSILHRITGVLLFFGLPFLLWWLSLSLSSPESFATVHALLSSPLGKLILWGLLWALLYHLLAGIRHLLWDLG 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhHHHHHHHcc
Confidence 45578999999999855433221 1 11 3567788899999999999999999984
No 15
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=65.92 E-value=56 Score=27.33 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=57.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhhC---------c--------hH---HHHHHHHHHHHHHHHhhccceeeeccCCc
Q psy10707 23 KSDHTTLWTIERFLSAGLLAVIPAAYLV---------P--------SV---ALEYALVVSIVMHSHWGIEALVVDYARPE 82 (130)
Q Consensus 23 ~~~gs~hW~~ERi~s~aLlpL~~~~~~~---------p--------~~---v~D~~La~~l~~H~h~G~~svI~DYv~~~ 82 (130)
|...+..|..||++.++++.+.++=+.. | |+ .+=.++-.+..+|.-.|+-...+-+---+
T Consensus 117 ~H~DT~lW~~Q~iTG~ilf~~~~~Hl~~i~~~~~~Ig~~~Sa~rv~~~~~w~fYlvlL~~v~lH~~iGLyR~~VKWG~~~ 196 (258)
T PRK13553 117 KHGDTSLWFIQAFTGFAMFFLASVHLYVMLTNPDKIGPYGSSDRVVSQNMWLLYIVLLFAVELHGSIGLYRLAVKWGWFE 196 (258)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHhhhcCccccCchhhHHHHhCCcHHHHHHHHHHHHHHHHHHhhhheeeEEEeec
Confidence 4456789999999999999998876521 1 12 23445667788999999999988876421
Q ss_pred ch-----hhhHHHHHHHHHHHHHHHHHhhh
Q psy10707 83 VV-----GVALAKIFHLSVYILSIITLAGL 107 (130)
Q Consensus 83 ~~-----gp~~~k~a~~~l~~~S~~tl~GL 107 (130)
-- -+++.++.+.+....+++.+.-|
T Consensus 197 ~~~~q~~R~~~~~v~~~i~v~f~~lGl~sL 226 (258)
T PRK13553 197 GKNPKESRKKLKKVKWALSVFFLVLGLLTL 226 (258)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 02566666666655555555555
No 16
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=43.63 E-value=80 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhh---heeEe--ecCCchHHHHHhhcccc
Q psy10707 91 IFHLSVYILSIITLAG---LMNLI--LNGGGVVEGTKKLWAIK 128 (130)
Q Consensus 91 ~a~~~l~~~S~~tl~G---Ly~f~--t~dvGi~~~vk~lW~~~ 128 (130)
+.|..+++++.+...| +.-|- ++|+|+.+..+=+|..+
T Consensus 158 ivRlilf~i~w~~~~g~~~fWlfPNLfeD~Gf~eSF~Ply~~~ 200 (224)
T PF03839_consen 158 IVRLILFLITWFFTGGKHGFWLFPNLFEDVGFFESFKPLYSWE 200 (224)
T ss_pred HHHHHHHHHHHHHhcCCCCEEeCCccccccchhhheeeccccc
Confidence 4577788888888755 55442 58999999999999765
No 17
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=43.50 E-value=1.3e+02 Score=22.17 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHH---HHHHHHhhh----Cc-----------h---HHHHHHHHHHHHHHHHhhccceeeeccCCcc-hhh
Q psy10707 29 LWTIERFLSAGL---LAVIPAAYL----VP-----------S---VALEYALVVSIVMHSHWGIEALVVDYARPEV-VGV 86 (130)
Q Consensus 29 hW~~ERi~s~aL---lpL~~~~~~----~p-----------~---~v~D~~La~~l~~H~h~G~~svI~DYv~~~~-~gp 86 (130)
-....|++-++| +|++.+.+. .| + ..+-..+..++.+|.--|..-.+-|--...- ..
T Consensus 26 ~SIlHRiSGv~L~~~~~~~~~~l~~~~~~p~~f~~~~~~~~~~~~k~~~~~~~~al~yH~~nGIRHL~wD~g~g~~~~~- 104 (129)
T PRK09487 26 ASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQAAAIMDSFFVKFIMWGILTALAYHVVVGIRHLLMDFGYLEETLE- 104 (129)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccccchhHH-
Confidence 345689988877 343333331 12 2 3344555778999999999999999754332 21
Q ss_pred hHHHHHHHHHHHHHHHHH-hhhe
Q psy10707 87 ALAKIFHLSVYILSIITL-AGLM 108 (130)
Q Consensus 87 ~~~k~a~~~l~~~S~~tl-~GLy 108 (130)
...+.+...+.+.-++++ +|++
T Consensus 105 ~~~~sa~~v~~~s~vlt~~~g~~ 127 (129)
T PRK09487 105 AGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444334433 3554
No 18
>cd03497 SQR_TypeB_1_TM Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers,
Probab=39.66 E-value=76 Score=25.06 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=40.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhh-------------------------------hCc-hHHHHHHHHHHHHHHHHhhccc
Q psy10707 26 HTTLWTIERFLSAGLLAVIPAAY-------------------------------LVP-SVALEYALVVSIVMHSHWGIEA 73 (130)
Q Consensus 26 gs~hW~~ERi~s~aLlpL~~~~~-------------------------------~~p-~~v~D~~La~~l~~H~h~G~~s 73 (130)
.+.-|..+|++.+.++..+.+=+ ..| -.+...++.+++.+|.--|+++
T Consensus 89 ~~~a~~~mritG~ill~Fli~Hl~~~~~~~~~~~~~~~~~~~~~~~y~~v~~~f~~~~~~~~Yvv~~~al~~Hl~hGl~s 168 (207)
T cd03497 89 RNWMYTLQRITGIILLVFIAWHVWHTRFAEALGHVDIQTPEAGEANLSAMRNALASPLMLIFYIIGVLAAVFHFANGLWT 168 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999988876554322 011 1346778888999999999999
Q ss_pred eeeecc
Q psy10707 74 LVVDYA 79 (130)
Q Consensus 74 vI~DYv 79 (130)
...|.-
T Consensus 169 ~~~t~G 174 (207)
T cd03497 169 FLITWG 174 (207)
T ss_pred HHHHcC
Confidence 999983
No 19
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=35.66 E-value=1.4e+02 Score=26.70 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhh---C------------chHHHHHHHHHHHHHHHHhhccceeeeccC
Q psy10707 31 TIERFLSAGLLAVIPAAYL---V------------PSVALEYALVVSIVMHSHWGIEALVVDYAR 80 (130)
Q Consensus 31 ~~ERi~s~aLlpL~~~~~~---~------------p~~v~D~~La~~l~~H~h~G~~svI~DYv~ 80 (130)
++||+.+..++-+..+.+. . |...++...++++++=....+-...-||.|
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysR 218 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSR 218 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 5789888877777666551 1 345688888899999999999999999985
No 20
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=29.29 E-value=39 Score=24.87 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=34.7
Q ss_pred HHHHhhccceeeeccCCcchhhhHHHHHHHHHHHHHHHHHhhheeEeecCCchHHHHHhhcccc
Q psy10707 65 MHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAIK 128 (130)
Q Consensus 65 ~H~h~G~~svI~DYv~~~~~gp~~~k~a~~~l~~~S~~tl~GLy~f~t~dvGi~~~vk~lW~~~ 128 (130)
+-..+..-.-|+||+.+...+-..--+.......+.+--++-+-.+..+|-++.+++|+=|+.-
T Consensus 65 ll~~l~IP~FI~~~i~~~~~~~~~~~~~~~~~~~l~~R~if~lp~~vle~~~~~~A~k~Sw~lt 128 (149)
T PF10110_consen 65 LLSKLKIPEFITDYIMKNPWLLILYLLLYLILFYLNIRLIFVLPLIVLENKSFKEALKESWQLT 128 (149)
T ss_pred HHccCcCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344445556677776543221111111111222233344556666789999999999999754
No 21
>PRK10927 essential cell division protein FtsN; Provisional
Probab=28.88 E-value=66 Score=27.80 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhheeEeecCC
Q psy10707 93 HLSVYILSIITLAGLMNLILNGG 115 (130)
Q Consensus 93 ~~~l~~~S~~tl~GLy~f~t~dv 115 (130)
+.+|.++-+++|+|-+||.+++-
T Consensus 36 m~alAvavlv~fiGGLyFith~k 58 (319)
T PRK10927 36 MVAIAAAVLVTFIGGLYFITHHK 58 (319)
T ss_pred HHHHHHHHHHHHhhheEEEecCC
Confidence 56666666777776666666654
No 22
>KOG2927|consensus
Probab=28.37 E-value=51 Score=29.03 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHh---hheeEe--ecCCchHHHHHhhcccc
Q psy10707 91 IFHLSVYILSIITLA---GLMNLI--LNGGGVVEGTKKLWAIK 128 (130)
Q Consensus 91 ~a~~~l~~~S~~tl~---GLy~f~--t~dvGi~~~vk~lW~~~ 128 (130)
+++..|++++.+... |+.-|- ++|+|+.+..+.||...
T Consensus 237 IvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~PLy~~~ 279 (372)
T KOG2927|consen 237 IVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFKPLYEYH 279 (372)
T ss_pred HHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhccccccc
Confidence 344455555555444 444443 89999999999999754
No 23
>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]
Probab=27.14 E-value=29 Score=28.81 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=48.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhHHH-----HHHHHHH
Q psy10707 23 KSDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAK-----IFHLSVY 97 (130)
Q Consensus 23 ~~~gs~hW~~ERi~s~aLlpL~~~~~~~p~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~~k-----~a~~~l~ 97 (130)
..|--|-|.+|+..-+.++-.+...++ ++-..+-=..+..+.-|.- |+.-..+| .+.- +.+..|+
T Consensus 135 q~D~hyVw~yep~~~~~~~l~~~fvlv----~lalVlfplWPr~mr~g~~-----Y~s~g~~G-~i~~ffvlaIlRliLf 204 (259)
T COG5232 135 QEDQHYVWAYEPTSNISLVLCGVFVLV----TLALVLFPLWPRNMRQGLF-----YMSYGLGG-FITFFFVLAILRLILF 204 (259)
T ss_pred cccceeeeecCCCccchhhHHHHHHHH----HHHHHHHhcCchHhhcCee-----eeeeccch-HHHHHHHHHHHHHHHH
Confidence 346667899999776655433222221 0111111122333344433 33323333 2111 2233333
Q ss_pred HHHHHHH-hhheeEe--ecCCchHHHHHhhccccC
Q psy10707 98 ILSIITL-AGLMNLI--LNGGGVVEGTKKLWAIKS 129 (130)
Q Consensus 98 ~~S~~tl-~GLy~f~--t~dvGi~~~vk~lW~~~~ 129 (130)
.+|.+.- .|+.-|- .+|+|++|..|-||...+
T Consensus 205 ~it~~~y~~GiWlFPNLfeDvGf~eSFkPLw~~he 239 (259)
T COG5232 205 SITYLLYPSGIWLFPNLFEDVGFFESFKPLWEYHE 239 (259)
T ss_pred HhhheeecCceeecchHHhhcchhhhcchHHhhcc
Confidence 3333322 4666664 799999999999997654
No 24
>PRK10910 hypothetical protein; Provisional
Probab=25.17 E-value=2.5e+02 Score=19.85 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhhCc-----hHHHHHHHHHHHHHHH
Q psy10707 31 TIERFLSAGLLAVIPAAYLVP-----SVALEYALVVSIVMHS 67 (130)
Q Consensus 31 ~~ERi~s~aLlpL~~~~~~~p-----~~v~D~~La~~l~~H~ 67 (130)
..-|++.+..=..+..-++.| +..+|.+++..+.+|+
T Consensus 4 ~lGk~l~l~vW~~ll~NL~~PFp~pl~~~l~ia~~f~~~MH~ 45 (89)
T PRK10910 4 NLGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFMVLMHG 45 (89)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHHHH
Confidence 444555544444444444555 6789999999999996
No 25
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=23.14 E-value=1.8e+02 Score=24.75 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=46.3
Q ss_pred ccCCCCcchhHHHHHHH-HHHHHHHHHhhhCc--hHHHHHHHHHHHHH-----HHHhhccceeeeccCCcchhhhHHHHH
Q psy10707 21 HSKSDHTTLWTIERFLS-AGLLAVIPAAYLVP--SVALEYALVVSIVM-----HSHWGIEALVVDYARPEVVGVALAKIF 92 (130)
Q Consensus 21 ~~~~~gs~hW~~ERi~s-~aLlpL~~~~~~~p--~~v~D~~La~~l~~-----H~h~G~~svI~DYv~~~~~gp~~~k~a 92 (130)
.++-||..||..=|-+- =-..|.+....... +|..|..|+-.++- -.-.|+++-++| + +++.+...|
T Consensus 176 aA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL~~~~~~TlavGL~~~~~~--~---~~~~~~~FA 250 (282)
T COG3833 176 AAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLLRDPENYTLAVGLQSFLNG--P---QNTNWGLFA 250 (282)
T ss_pred HHhhcCcchHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHhcC--c---chhhHHHHH
Confidence 35669999997644332 22223333333222 79999999988776 456799999998 2 355666666
Q ss_pred HHHHHH
Q psy10707 93 HLSVYI 98 (130)
Q Consensus 93 ~~~l~~ 98 (130)
-.++.+
T Consensus 251 AgAvL~ 256 (282)
T COG3833 251 AGAVLI 256 (282)
T ss_pred HHHHHH
Confidence 655443
No 26
>cd03498 SQR_TypeB_2_TM Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangem
Probab=22.61 E-value=3.8e+02 Score=20.95 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=47.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhC-------c---------------------hHH---HHHHHHHHHHHHHHhhccc
Q psy10707 25 DHTTLWTIERFLSAGLLAVIPAAYLV-------P---------------------SVA---LEYALVVSIVMHSHWGIEA 73 (130)
Q Consensus 25 ~gs~hW~~ERi~s~aLlpL~~~~~~~-------p---------------------~~v---~D~~La~~l~~H~h~G~~s 73 (130)
..+.-|..+|++.+.++-.+.+=+.. | +|. +=.+..+++.+|..-|+++
T Consensus 88 ~~t~~~~~m~itG~vll~Fiv~Hl~~~~~~~~~~~~~~~~~~~~~~y~~v~~~f~~p~~~~~Yvv~~~al~~Hl~hGl~s 167 (209)
T cd03498 88 LASLASRTMIWSGLIILLFIILHLLDFTFGVVGPVSPPMGVGRGDVYELLVASFQQPWIAALYVLAMVALGLHLSHGFWS 167 (209)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999998877665543311 0 111 2334456788999999999
Q ss_pred eeeeccCCcchhhhHHHHHHHHHHHHHHHHHhh
Q psy10707 74 LVVDYARPEVVGVALAKIFHLSVYILSIITLAG 106 (130)
Q Consensus 74 vI~DYv~~~~~gp~~~k~a~~~l~~~S~~tl~G 106 (130)
...+.--. +|+..+..+..-.+.+++...|
T Consensus 168 ~~~t~G~~---~~~~~~~~~~~~~~~~~~i~~g 197 (209)
T cd03498 168 AFQTLGLN---NPRYRPALKAVGRVVAILIAGG 197 (209)
T ss_pred HHHHCCCC---CchHHHHHHHHHHHHHHHHHHH
Confidence 99988432 2333444444434444444443
No 27
>PF04819 DUF716: Family of unknown function (DUF716) ; InterPro: IPR006904 These sequences are a family of uncharacterised hypothetical proteins restricted to eukaryotes. Q9SLW7 from SWISSPROT represents a sequence from Nicotiana tabacum (Common tobacco)which is up regulated in response to TMV infection.
Probab=21.39 E-value=3.4e+02 Score=20.01 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHhhccceeeeccC
Q psy10707 23 KSDHTTLWTIERFLSAGLLAVIPAAYLVP-SVALEYALVVSIVMHSHWGIEALVVDYAR 80 (130)
Q Consensus 23 ~~~gs~hW~~ERi~s~aLlpL~~~~~~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~ 80 (130)
.-++-+|+-..-.+.++.+-.+.-.. .| +..+|...+.++.++.=|=+|.-.+=|.|
T Consensus 30 ~le~~~H~LL~~~i~~~~~~~~le~~-~p~~~~~~~~r~~~~~lqGtWf~Q~g~~Ly~p 87 (137)
T PF04819_consen 30 GLEGRVHSLLLLPIFLCALSTLLEAW-FPNSFLAELLRSSSILLQGTWFWQIGFILYPP 87 (137)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33677888887776666655544444 36 79999999999999999999998888888
No 28
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=20.01 E-value=31 Score=27.26 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=10.8
Q ss_pred CCCCcchhHHHHH
Q psy10707 23 KSDHTTLWTIERF 35 (130)
Q Consensus 23 ~~~gs~hW~~ERi 35 (130)
..+|+.||.+||=
T Consensus 132 GGDGT~hW~Yd~Q 144 (180)
T PLN00180 132 GGDGTGHWVYERQ 144 (180)
T ss_pred CCCCceeeEeehH
Confidence 4599999999983
Done!