Query psy10707
Match_columns 130
No_of_seqs 100 out of 238
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:34:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr8_D Succinate dehydrogenase 100.0 8.2E-45 2.8E-49 277.0 6.9 105 23-127 52-156 (156)
2 2h88_D Succinate dehydrogenase 100.0 1.8E-42 6.2E-47 248.1 6.2 101 23-127 3-103 (103)
3 2wdq_D Succinate dehydrogenase 99.2 1.6E-11 5.5E-16 88.0 6.6 78 21-102 7-103 (115)
4 2wdq_C Succinate dehydrogenase 92.9 0.48 1.6E-05 33.6 7.5 56 25-80 22-98 (129)
5 1zoy_C Large cytochrome bindin 74.4 18 0.00062 25.8 7.9 56 26-81 35-113 (140)
6 2h88_C Succinate dehydrogenase 72.3 22 0.00074 25.4 7.9 56 26-81 35-113 (140)
7 3vr8_C Cytochrome B-large subu 63.5 15 0.00051 28.1 5.7 77 4-80 19-145 (188)
8 2bs2_C Quinol-fumarate reducta 37.0 1.4E+02 0.0047 23.3 7.5 72 25-96 121-217 (256)
9 2y69_J Cytochrome C oxidase po 13.6 38 0.0013 22.5 -0.1 18 1-18 6-23 (80)
10 1jjg_A M156R; beta barrel, S1 13.3 47 0.0016 23.1 0.3 16 67-82 53-68 (102)
No 1
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=100.00 E-value=8.2e-45 Score=276.97 Aligned_cols=105 Identities=32% Similarity=0.675 Sum_probs=102.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhHHHHHHHHHHHHHHH
Q psy10707 23 KSDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSII 102 (130)
Q Consensus 23 ~~~gs~hW~~ERi~s~aLlpL~~~~~~~p~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~~k~a~~~l~~~S~~ 102 (130)
..+||+||++||++|++|+||+|++++.|||++|.+|++++++|+|||||+||+||||||+||+.++|+++++++++|++
T Consensus 52 a~~Gs~HW~~ERvtAvaLlpL~~~a~~~~~pvlD~lLa~al~~H~h~GfqsvI~DYVp~rv~g~~~~K~A~~lL~~~s~~ 131 (156)
T 3vr8_D 52 LHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTAC 131 (156)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhheecchhhcCchHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHhhheeEeecCCchHHHHHhhccc
Q psy10707 103 TLAGLMNLILNGGGVVEGTKKLWAI 127 (130)
Q Consensus 103 tl~GLy~f~t~dvGi~~~vk~lW~~ 127 (130)
+++|||+|||||+||+++||++|++
T Consensus 132 tl~GLy~f~t~dvGit~~Ik~lW~l 156 (156)
T 3vr8_D 132 LLAGLLYFNEHDVGLTRAFEMVWEL 156 (156)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTC
T ss_pred HHHHheEeeecCccHHHHHHHHhcC
Confidence 9999999999999999999999974
No 2
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=100.00 E-value=1.8e-42 Score=248.06 Aligned_cols=101 Identities=35% Similarity=0.686 Sum_probs=96.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHhhccceeeeccCCcchhhhHHHHHHHHHHHHHHH
Q psy10707 23 KSDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSII 102 (130)
Q Consensus 23 ~~~gs~hW~~ERi~s~aLlpL~~~~~~~p~~v~D~~La~~l~~H~h~G~~svI~DYv~~~~~gp~~~k~a~~~l~~~S~~ 102 (130)
..+||+||++||++|++|+||+|+++..|||++|.++++++++|+|+|||+||+||||+++ .++.++++++++|++
T Consensus 3 ak~Gs~HW~~eR~~avallpL~p~~~~~~~pv~d~~l~~~l~~H~~~G~q~vI~DYv~~~~----~~~~~~~~~~~~s~~ 78 (103)
T 2h88_D 3 SKAASLHWTSERAVSALLLGLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDT----PIKVANTGLYVLSAI 78 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHH----HHHHHHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCeeeecccccch----HHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999764 567899999999999
Q ss_pred HHhhheeEeecCCchHHHHHhhccc
Q psy10707 103 TLAGLMNLILNGGGVVEGTKKLWAI 127 (130)
Q Consensus 103 tl~GLy~f~t~dvGi~~~vk~lW~~ 127 (130)
+++|||+|||||+|++++||++|++
T Consensus 79 t~~Gl~~~~~~d~Gi~~~ik~lW~l 103 (103)
T 2h88_D 79 TFTGLCYFNYYDVGICKAVAMLWSI 103 (103)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTC
T ss_pred HHHHHheeeecCCcHHHHHHHHhcC
Confidence 9999999999999999999999985
No 3
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=99.23 E-value=1.6e-11 Score=87.96 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=60.0
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHhh------------------hCc-hHHHHHHHHHHHHHHHHhhccceeeeccCC
Q psy10707 21 HSKSDHTTLWTIERFLSAGLLAVIPAAY------------------LVP-SVALEYALVVSIVMHSHWGIEALVVDYARP 81 (130)
Q Consensus 21 ~~~~~gs~hW~~ERi~s~aLlpL~~~~~------------------~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~ 81 (130)
.++.+|++||.+||+++++|+|++++.+ ..| .+++|.++..++..|...|++.+++||+++
T Consensus 7 ~~~~~G~~~Wi~~RiSgv~L~~l~~~~l~~~~~~~~~~y~~~~~~~~~p~~~i~~~l~l~~~~~H~~~Gir~ii~Dyv~~ 86 (115)
T 2wdq_D 7 ALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKP 86 (115)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4566899999999999999999999875 123 578999999999999999999999999986
Q ss_pred cchhhhHHHHHHHHHHHHHHH
Q psy10707 82 EVVGVALAKIFHLSVYILSII 102 (130)
Q Consensus 82 ~~~gp~~~k~a~~~l~~~S~~ 102 (130)
+ ..+.....++....+.
T Consensus 87 ~----~~R~~l~~~~~~~~~~ 103 (115)
T 2wdq_D 87 L----ALRLMLQLVIVVALVV 103 (115)
T ss_dssp H----HHHHHHHHHHHHHHHH
T ss_pred h----hHHHHHHHHHHHHHHH
Confidence 4 4455555555544433
No 4
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=92.87 E-value=0.48 Score=33.61 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=41.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHh-------hhCc--------------hHHHHHHHHHHHHHHHHhhccceeeeccC
Q psy10707 25 DHTTLWTIERFLSAGLLAVIPAA-------YLVP--------------SVALEYALVVSIVMHSHWGIEALVVDYAR 80 (130)
Q Consensus 25 ~gs~hW~~ERi~s~aLlpL~~~~-------~~~p--------------~~v~D~~La~~l~~H~h~G~~svI~DYv~ 80 (130)
-.+.-|.++|++.++|.-.++.. +..| ..+++..++.++.+|.--|+..++.||-.
T Consensus 22 ~t~~~silhRiTGv~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRhl~~D~G~ 98 (129)
T 2wdq_C 22 ITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGY 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccc
Confidence 34567899999999886544321 1112 24677888999999999999999999943
No 5
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=74.43 E-value=18 Score=25.82 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=39.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHhh----hCc---------------hHH----HHHHHHHHHHHHHHhhccceeeeccCC
Q psy10707 26 HTTLWTIERFLSAGLLAVIPAAY----LVP---------------SVA----LEYALVVSIVMHSHWGIEALVVDYARP 81 (130)
Q Consensus 26 gs~hW~~ERi~s~aLlpL~~~~~----~~p---------------~~v----~D~~La~~l~~H~h~G~~svI~DYv~~ 81 (130)
++.-|..+|++.++|.-.++... ..| .++ ++..++.++.+|.--|+..++.||...
T Consensus 35 t~~~SIlHRiTGv~L~~~l~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~yH~~nGiRHL~wD~g~g 113 (140)
T 1zoy_C 35 PMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKG 113 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence 34567899999888754433321 122 122 347788899999999999999999653
No 6
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=72.31 E-value=22 Score=25.44 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=39.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhh----hCc---------------hHH----HHHHHHHHHHHHHHhhccceeeeccCC
Q psy10707 26 HTTLWTIERFLSAGLLAVIPAAY----LVP---------------SVA----LEYALVVSIVMHSHWGIEALVVDYARP 81 (130)
Q Consensus 26 gs~hW~~ERi~s~aLlpL~~~~~----~~p---------------~~v----~D~~La~~l~~H~h~G~~svI~DYv~~ 81 (130)
++.-|..+|++.++|.-.++... ..| .++ +...++.++.+|.--|+..++.||...
T Consensus 35 t~~~SIlHRiTGv~L~~~l~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~yH~~nGiRHL~wD~g~g 113 (140)
T 2h88_C 35 PMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKG 113 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence 34567899999888754433221 122 122 347788899999999999999999653
No 7
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=63.52 E-value=15 Score=28.06 Aligned_cols=77 Identities=13% Similarity=0.284 Sum_probs=49.2
Q ss_pred cccceeeeccchhhhccccCC---------------C------------CcchhHHHHHHHHHHHHHHH---Hhh-hCc-
Q psy10707 4 SLVKHFSTTQVQHDAAVHSKS---------------D------------HTTLWTIERFLSAGLLAVIP---AAY-LVP- 51 (130)
Q Consensus 4 ~~v~~~~~s~~~~~~~~~~~~---------------~------------gs~hW~~ERi~s~aLlpL~~---~~~-~~p- 51 (130)
+..|.|+++.|+..+++.+.. . ...-|...|++.++|...++ +++ ..|
T Consensus 19 ~~~r~~~~~~~~~~~~k~~~~~~~~~~l~~~~r~~RPlSPHLtIYr~qlt~~~SIlHRITGv~L~~~l~l~~la~l~sp~ 98 (188)
T 3vr8_C 19 KFIRSVQTSAARVSAEKTPIQVWGWDYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPL 98 (188)
T ss_pred hhcccccccccccccccccHHHHHHHHHHHhhhcCCCCCCCcCeeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 345888888887665443300 1 23457789999988753322 222 122
Q ss_pred ----------h--------HHHHHHHHHHHHHHHHhhccceeeeccC
Q psy10707 52 ----------S--------VALEYALVVSIVMHSHWGIEALVVDYAR 80 (130)
Q Consensus 52 ----------~--------~v~D~~La~~l~~H~h~G~~svI~DYv~ 80 (130)
+ .++...++.++.+|.--|..-.+-|+-.
T Consensus 99 ~f~~~~~~~~s~~lp~~i~~lvk~~l~~a~~yH~~nGIRHLiwD~G~ 145 (188)
T 3vr8_C 99 DFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAK 145 (188)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 1 1344556778999999999999999854
No 8
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=37.04 E-value=1.4e+02 Score=23.30 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=46.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhh-------------------hCc-hHHHHHHHHHHHHHHHHhhccceeeeccCCc--
Q psy10707 25 DHTTLWTIERFLSAGLLAVIPAAY-------------------LVP-SVALEYALVVSIVMHSHWGIEALVVDYARPE-- 82 (130)
Q Consensus 25 ~gs~hW~~ERi~s~aLlpL~~~~~-------------------~~p-~~v~D~~La~~l~~H~h~G~~svI~DYv~~~-- 82 (130)
..+.-|..+|++.+.++.++.+=+ ..| ..++=.+.-+++.+|...|+.+...+.--.+
T Consensus 121 ~~t~~w~~q~~tG~iillfii~Hl~~~~~~~~~~~~~~~~~~f~~p~~~~~Yiv~lval~~Hl~hGl~s~~qt~G~~~~~ 200 (256)
T 2bs2_C 121 GDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDGE 200 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCc
Confidence 356789999999988877766222 112 1345555667889999999999766654211
Q ss_pred ---chhhhHHHHHHHHH
Q psy10707 83 ---VVGVALAKIFHLSV 96 (130)
Q Consensus 83 ---~~gp~~~k~a~~~l 96 (130)
++-|.+.+++.+..
T Consensus 201 ~~~~~~~~~~~i~~~l~ 217 (256)
T 2bs2_C 201 TPDKTRANLKKLKTLMS 217 (256)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHHHH
Confidence 23345666665533
No 9
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=13.65 E-value=38 Score=22.52 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=1.0
Q ss_pred CCccccceeeeccchhhh
Q psy10707 1 LSPSLVKHFSTTQVQHDA 18 (130)
Q Consensus 1 ~~~~~v~~~~~s~~~~~~ 18 (130)
|++-.+|+|+||+++...
T Consensus 6 l~~~~~r~~st~~~r~~~ 23 (80)
T 2y69_J 6 VSQALVRSFSSTARNRFE 23 (80)
T ss_dssp ----------------CC
T ss_pred HHHHHHHHhcccchhhhc
Confidence 466778999999998654
No 10
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=13.28 E-value=47 Score=23.12 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=12.6
Q ss_pred HHhhccceeeeccCCc
Q psy10707 67 SHWGIEALVVDYARPE 82 (130)
Q Consensus 67 ~h~G~~svI~DYv~~~ 82 (130)
-+-|+|+||.||+.-+
T Consensus 53 dY~glEaii~dYvnv~ 68 (102)
T 1jjg_A 53 GYEGHECILLDYLNYR 68 (102)
T ss_dssp TTSSCEEEECTTCCSS
T ss_pred CCCCceeeeehhhhhh
Confidence 3459999999998654
Done!