RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10707
         (130 letters)



>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit,
           mitochondrial; membrane protein, reductase, mitochondria
           MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A
           {Ascaris suum} PDB: 3vrb_D*
          Length = 156

 Score =  102 bits (256), Expect = 3e-29
 Identities = 34/116 (29%), Positives = 60/116 (51%)

Query: 12  TQVQHDAAVHSKSDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGI 71
             +  +        H TL+ IER+ +A ++ +IPAAY +    ++  L +++ +H HWG+
Sbjct: 41  DPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGV 100

Query: 72  EALVVDYARPEVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
             +V DY RP V+G  LA    +  YI +   LAGL+    +  G+    + +W +
Sbjct: 101 WGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL 156


>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II,
           membrane protein, heme protein, iron sulfur PROT
           cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
           1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D*
           2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D*
           3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D*
           3aea_D* 3aeb_D* 3aec_D* ...
          Length = 103

 Score = 89.6 bits (222), Expect = 9e-25
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 22  SKSDHTTLWTIERFLSAGLLAVIPAAYLVPSVALEYALVVSIVMHSHWGIEALVVDYARP 81
           S    +  WT ER +SA LL ++PAAYL P  A++Y+L  ++ +H HWG+  ++ DY   
Sbjct: 2   SSKAASLHWTSERAVSALLLGLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHG 61

Query: 82  EVVGVALAKIFHLSVYILSIITLAGLMNLILNGGGVVEGTKKLWAI 127
           +       K+ +  +Y+LS IT  GL        G+ +    LW+I
Sbjct: 62  DTPI----KVANTGLYVLSAITFTGLCYFNYYDVGICKAVAMLWSI 103


>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
           structural genomics, JCSG, prote structure initiative,
           PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
           b.30.5.11 c.1.8.13
          Length = 564

 Score = 26.6 bits (58), Expect = 3.0
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 68  HWGIEALVVDYARPEVV 84
           +W  +   +D ++ EV+
Sbjct: 302 NWNKKIYALDLSKDEVL 318


>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
           sandwich, transferase; 2.30A {Escherichia coli} SCOP:
           b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
          Length = 617

 Score = 25.6 bits (57), Expect = 6.8
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 8/35 (22%)

Query: 66  HSHWGIEALVVDYARPEV----VGVAL--AKIFHL 94
           H  W    L+ +Y R EV    VG AL   + F +
Sbjct: 256 HQDWN--TLIYNYGRREVSNFLVGNALYWIERFGI 288


>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
           H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
           transferase; 2.33A {Mycobacterium tuberculosis}
          Length = 722

 Score = 25.3 bits (56), Expect = 8.6
 Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 2/18 (11%)

Query: 66  HSHWGIEALVVDYARPEV 83
              WG    V D+ RPEV
Sbjct: 364 QLDWG--TYVFDFGRPEV 379


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,984,798
Number of extensions: 114507
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 8
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)