RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10707
         (130 letters)



>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD
           {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 26.2 bits (58), Expect = 0.72
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 55  LEYALVVSIVMHSHWGIEALVVDYARPEVVGVALAKIFHLSVYILSIITL 104
                + SI++H+  G+  ++ DY +P  + + L  +  +++ +  I   
Sbjct: 58  FTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGF 107


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1449

 Score = 25.6 bits (55), Expect = 2.6
 Identities = 3/16 (18%), Positives = 8/16 (50%)

Query: 11   TTQVQHDAAVHSKSDH 26
            T ++  +A   ++ D 
Sbjct: 1404 TVEILFEAGASAELDD 1419


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score = 24.8 bits (53), Expect = 4.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 11   TTQVQHDAAVHSKSDH 26
            TT V  +AA+  K D 
Sbjct: 1442 TTHVLTEAAIAGKKDE 1457


>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 119

 Score = 24.0 bits (52), Expect = 5.0
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 20 VHSKSDHTTLWTIERFLSAGLLAVI 44
          + +K +   L      L  G    +
Sbjct: 63 LQAKDNAAALALSCEALRLGRSHTV 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,768
Number of extensions: 18416
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 5
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)