BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10708
(589 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 236
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/232 (80%), Positives = 201/232 (86%)
Query: 351 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRT 410
+SN P PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT
Sbjct: 1 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRT 60
Query: 411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSA 470
+ ERARLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSA
Sbjct: 61 EAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSA 120
Query: 471 YIKVFDLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVD 530
YIKVFDLRQC+R G+IPGP SVGGIAPAISLSAAAGIGVD
Sbjct: 121 YIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVD 180
Query: 531 DLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
DLRRLCILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 181 DLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPI 232
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKES 334
+ YFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERAR
Sbjct: 13 IAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGK 72
Query: 335 GLQTSC 340
G+Q C
Sbjct: 73 GVQLEC 78
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 239
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/232 (80%), Positives = 201/232 (86%)
Query: 351 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRT 410
+SN P PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT
Sbjct: 1 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRT 60
Query: 411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSA 470
+ ERARLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSA
Sbjct: 61 EAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSA 120
Query: 471 YIKVFDLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVD 530
YIKVFDLRQC+R G+IPGP SVGGIAPAISLSAAAGIGVD
Sbjct: 121 YIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVD 180
Query: 531 DLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
DLRRLCILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 181 DLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPI 232
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKES 334
+ YFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERAR
Sbjct: 13 IAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGK 72
Query: 335 GLQTSC 340
G+Q C
Sbjct: 73 GVQLEC 78
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|B Chain B, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|C Chain C, Crystal Structure Analysis Of The Smad4 Active Fragment
Length = 268
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/232 (80%), Positives = 201/232 (86%)
Query: 351 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRT 410
+SN P PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT
Sbjct: 30 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRT 89
Query: 411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSA 470
+ ERARLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSA
Sbjct: 90 EAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSA 149
Query: 471 YIKVFDLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVD 530
YIKVFDLRQC+R G+IPGP SVGGIAPAISLSAAAGIGVD
Sbjct: 150 YIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVD 209
Query: 531 DLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
DLRRLCILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 210 DLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPI 261
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKES 334
+ YFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERAR
Sbjct: 42 IAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGK 101
Query: 335 GLQTSC 340
G+Q C
Sbjct: 102 GVQLEC 107
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 30/33 (90%)
Query: 210 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCP 242
+SN P PEYWCS+AYFE+D QVGETFKVPSSCP
Sbjct: 30 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCP 62
>pdb|1G88|A Chain A, S4afl3arg515 Mutant
pdb|1G88|B Chain B, S4afl3arg515 Mutant
pdb|1G88|C Chain C, S4afl3arg515 Mutant
Length = 268
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/232 (79%), Positives = 200/232 (86%)
Query: 351 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRT 410
+SN P PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT
Sbjct: 30 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRT 89
Query: 411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSA 470
+ ERARLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSA
Sbjct: 90 EAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSA 149
Query: 471 YIKVFDLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVD 530
YIKVFDLRQC+R G+IPGP SVGGIAPAISLSAAAGIGVD
Sbjct: 150 YIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVD 209
Query: 531 DLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
DLRRLCILR+SFVKGWGPDYP QSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 210 DLRRLCILRMSFVKGWGPDYPSQSIKETPCWIEIHLHRALQLLDEVLHTMPI 261
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKES 334
+ YFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERAR
Sbjct: 42 IAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGK 101
Query: 335 GLQTSC 340
G+Q C
Sbjct: 102 GVQLEC 107
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 30/33 (90%)
Query: 210 LSNQPPPEYWCSVAYFELDTQVGETFKVPSSCP 242
+SN P PEYWCS+AYFE+D QVGETFKVPSSCP
Sbjct: 30 ISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCP 62
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex
pdb|1MR1|B Chain B, Crystal Structure Of A Smad4-Ski Complex
Length = 235
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/226 (80%), Positives = 197/226 (87%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERA
Sbjct: 3 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 62
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
RLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD
Sbjct: 63 RLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 122
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC 536
LRQC+R G+IPGP SVGGIAPAISLSAAAGIGVDDLRRLC
Sbjct: 123 LRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLC 182
Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
ILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 183 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPI 228
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKES 334
+ YFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERAR
Sbjct: 9 IAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGK 68
Query: 335 GLQTSC 340
G+Q C
Sbjct: 69 GVQLEC 74
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal
Domain
Length = 234
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/226 (80%), Positives = 197/226 (87%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERA
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 61
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
RLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD
Sbjct: 62 RLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 121
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC 536
LRQC+R G+IPGP SVGGIAPAISLSAAAGIGVDDLRRLC
Sbjct: 122 LRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLC 181
Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPI 582
ILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTMPI
Sbjct: 182 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPI 227
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKES 334
+ YFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERAR
Sbjct: 8 IAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGK 67
Query: 335 GLQTSC 340
G+Q C
Sbjct: 68 GVQLEC 73
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
pdb|3QSV|B Chain B, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
pdb|3QSV|C Chain C, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
pdb|3QSV|D Chain D, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
Length = 132
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 85/85 (100%)
Query: 77 SLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHLKYC 136
SLITAITTNG+HPSKCVTIQRTLDGRLQVAGRKGFPHVIYAR+WRWPDLHKNELKH+KYC
Sbjct: 48 SLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYC 107
Query: 137 QYAFDLKCDSVCVNPYHYERVVSPG 161
QYAFDLKCDSVCVNPYHYERVVSPG
Sbjct: 108 QYAFDLKCDSVCVNPYHYERVVSPG 132
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2
Length = 227
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 126/225 (56%), Gaps = 40/225 (17%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
P +WCS+AY+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E
Sbjct: 31 PAFWCSIAYYELNQRVGETFH--ASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMT 88
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
R HIG+GV+L G G+V+ CLSD ++FVQS ++ G P V KI P +K+F+
Sbjct: 89 RRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWHPA-TVCKIPPGCNLKIFN 146
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRRL 535
++ A ++ S G V L R+
Sbjct: 147 NQE-----------------------------------FAALLAQSVNQGFEAVYQLTRM 171
Query: 536 CILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
C +R+SFVKGWG +Y RQ++ TPCW+E+HL+ LQ LD+VL M
Sbjct: 172 CTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM 216
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E R
Sbjct: 37 IAYYELNQRVGETFH--ASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTR 89
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 216 PEYWCSVAYFELDTQVGETF 235
P +WCS+AY+EL+ +VGETF
Sbjct: 31 PAFWCSIAYYELNQRVGETF 50
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
pdb|1U7V|C Chain C, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 198
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 126/225 (56%), Gaps = 40/225 (17%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
P +WCS+AY+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E
Sbjct: 2 PAFWCSIAYYELNQRVGETFH--ASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMT 59
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
R HIG+GV+L G G+V+ CLSD ++FVQS ++ G P V KI P +K+F+
Sbjct: 60 RRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWHPA-TVCKIPPGCNLKIFN 117
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRRL 535
++ A ++ S G V L R+
Sbjct: 118 NQE-----------------------------------FAALLAQSVNQGFEAVYQLTRM 142
Query: 536 CILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
C +R+SFVKGWG +Y RQ++ TPCW+E+HL+ LQ LD+VL M
Sbjct: 143 CTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM 187
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E R
Sbjct: 8 IAYYELNQRVGETFH--ASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTR 60
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 216 PEYWCSVAYFELDTQVGETF 235
P +WCS+AY+EL+ +VGETF
Sbjct: 2 PAFWCSIAYYELNQRVGETF 21
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
pdb|1DEV|C Chain C, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
Length = 196
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 126/225 (56%), Gaps = 40/225 (17%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
P +WCS+AY+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E
Sbjct: 11 PAFWCSIAYYELNQRVGETFH--ASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMT 68
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
R HIG+GV+L G G+V+ CLSD ++FVQS ++ G P V KI P +K+F+
Sbjct: 69 RRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWHPA-TVCKIPPGCNLKIFN 126
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRRL 535
++ A ++ S G V L R+
Sbjct: 127 NQE-----------------------------------FAALLAQSVNQGFEAVYQLTRM 151
Query: 536 CILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
C +R+SFVKGWG +Y RQ++ TPCW+E+HL+ LQ LD+VL M
Sbjct: 152 CTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM 196
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E R
Sbjct: 17 IAYYELNQRVGETFH--ASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTR 69
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 216 PEYWCSVAYFELDTQVGETF 235
P +WCS+AY+EL+ +VGETF
Sbjct: 11 PAFWCSIAYYELNQRVGETF 30
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3
Length = 197
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 40/225 (17%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
P +WCS++Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E
Sbjct: 1 PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELT 58
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
R HIG+GV+L G G+V+ CLSD ++FVQS ++ G P V KI P +K+F+
Sbjct: 59 RRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWHPA-TVCKIPPGCNLKIFN 116
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRRL 535
++ A ++ S G V L R+
Sbjct: 117 NQE-----------------------------------FAALLAQSVNQGFEAVYQLTRM 141
Query: 536 CILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
C +R+SFVKGWG +Y RQ++ TPCW+E+HL+ LQ LD+VL M
Sbjct: 142 CTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM 186
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E R
Sbjct: 7 ISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTR 59
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 216 PEYWCSVAYFELDTQVGETF 235
P +WCS++Y+EL+ +VGETF
Sbjct: 1 PAFWCSISYYELNQRVGETF 20
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
pdb|1U7F|C Chain C, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 198
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 40/225 (17%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
P +WCS++Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E
Sbjct: 2 PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELT 59
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
R HIG+GV+L G G+V+ CLSD ++FVQS ++ G P V KI P +K+F+
Sbjct: 60 RRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWHPA-TVCKIPPGCNLKIFN 117
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRRL 535
++ A ++ S G V L R+
Sbjct: 118 NQE-----------------------------------FAALLAQSVNQGFEAVYQLTRM 142
Query: 536 CILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
C +R+SFVKGWG +Y RQ++ TPCW+E+HL+ LQ LD+VL M
Sbjct: 143 CTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM 187
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E R
Sbjct: 8 ISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTR 60
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 216 PEYWCSVAYFELDTQVGETF 235
P +WCS++Y+EL+ +VGETF
Sbjct: 2 PAFWCSISYYELNQRVGETF 21
>pdb|1MK2|A Chain A, Smad3 Sbd Complex
Length = 206
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 40/225 (17%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
P +WCS++Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E
Sbjct: 10 PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELT 67
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
R HIG+GV+L G G+V+ CLSD ++FVQS ++ G P V KI P +K+F+
Sbjct: 68 RRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWHPA-TVCKIPPGCNLKIFN 125
Query: 477 LRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRRL 535
++ A ++ S G V L R+
Sbjct: 126 NQE-----------------------------------FAALLAQSVNQGFEAVYQLTRM 150
Query: 536 CILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
C +R+SFVKGWG +Y RQ++ TPCW+E+HL+ LQ LD+VL M
Sbjct: 151 CTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM 195
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGETF +S P++T+DG+ DPS RFCLG LSNV+R E R
Sbjct: 16 ISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTR 68
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 216 PEYWCSVAYFELDTQVGETF 235
P +WCS++Y+EL+ +VGETF
Sbjct: 10 PAFWCSISYYELNQRVGETF 29
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|B Chain B, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|C Chain C, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|D Chain D, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
Length = 218
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 121/226 (53%), Gaps = 41/226 (18%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGG-NRFCLGALSNVHRTDQSER 415
P++WCS+ Y+EL+ +VGE F S+ +V +DG+ DPS NRFCLG LSNV+R E
Sbjct: 21 PKHWCSIVYYELNNRVGEAFHASST--SVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIEN 78
Query: 416 ARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVF 475
R HIGKGV L G G+V+ CLSD S+FVQS + G P V KI +K+F
Sbjct: 79 TRRHIGKGVHLYYVG-GEVYAECLSDSSIFVQSRNCNYHHGFHP-TTVCKIPSGCSLKIF 136
Query: 476 DLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRR 534
+ ++ A ++ S G V +L +
Sbjct: 137 NNQE-----------------------------------FAQLLAQSVNHGFETVYELTK 161
Query: 535 LCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
+C +R+SFVKGWG +Y RQ + TPCW+E+HLH LQ LD+VL M
Sbjct: 162 MCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQM 207
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGG-NRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGE F S+ +V +DG+ DPS NRFCLG LSNV+R E R
Sbjct: 27 IVYYELNNRVGEAFHASST--SVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIENTR 80
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 245
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 41/226 (18%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGG-NRFCLGALSNVHRTDQSER 415
P +W S+AY+EL+ +VGE F ++ +V +DG+ +PS +R CLG LSNV+R E
Sbjct: 48 PAFWASIAYYELNCRVGEVFHCNNN--SVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIEN 105
Query: 416 ARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVF 475
R HIGKGV L G+V+ CLSD ++FVQS + + G P V KI P +K+F
Sbjct: 106 TRRHIGKGVHL-YYVTGEVYAECLSDSAIFVQSRNCNYQHGFHP-STVCKIPPGCSLKIF 163
Query: 476 DLRQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRR 534
+ ++ A +S S G V +L +
Sbjct: 164 NNQE-----------------------------------FAQLLSQSVNNGFEAVYELTK 188
Query: 535 LCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
+C +R+SFVKGWG +Y RQ + TPCW+E+HLH LQ LD+VL M
Sbjct: 189 MCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQM 234
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 260 IARTRVNEPGNTSILLPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGG-NRFCLGALSN 318
+A+ +EP + + Y+EL+ +VGE F ++ +V +DG+ +PS +R CLG LSN
Sbjct: 40 VAQVSYSEPAFWASI-AYYELNCRVGEVFHCNNN--SVIVDGFTNPSNNSDRCCLGQLSN 96
Query: 319 VHRTDQSERAR 329
V+R E R
Sbjct: 97 VNRNSTIENTR 107
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 188
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 118/224 (52%), Gaps = 41/224 (18%)
Query: 359 YWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGG-NRFCLGALSNVHRTDQSERAR 417
+W S+AY+EL+ +VGE F ++ +V +DG+ +PS +R CLG LSNV+R E R
Sbjct: 2 FWASIAYYELNCRVGEVFHCNNN--SVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTR 59
Query: 418 LHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDL 477
HIGKGV L G+V+ CLSD ++FVQS + G P V KI P +K+F+
Sbjct: 60 RHIGKGVHL-YYVTGEVYAECLSDSAIFVQSRNCNYHHGFHP-STVCKIPPGCSLKIFNN 117
Query: 478 RQCYRXXXXXXXXXXXXXXXXXXXXXGHIPGPHSVGGIAPAISLSAAAGI-GVDDLRRLC 536
++ A +S S G V +L ++C
Sbjct: 118 QE-----------------------------------FAQLLSQSVNNGFEAVYELTKMC 142
Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
+R+SFVKGWG +Y RQ + TPCW+E+HLH LQ LD+VL M
Sbjct: 143 TIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQM 186
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 275 LPYFELDTQVGETFKVPSSCPNVTIDGYVDPSGG-NRFCLGALSNVHRTDQSERAR 329
+ Y+EL+ +VGE F ++ +V +DG+ +PS +R CLG LSNV+R E R
Sbjct: 6 IAYYELNCRVGEVFHCNNN--SVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTR 59
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
pdb|1MHD|B Chain B, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
Length = 132
Score = 117 bits (294), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
Query: 74 ELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHK-NELKH 132
+LD L AITT + +KC+TI R+LDGRLQV+ RKG PHVIY R+WRWPDLH +EL+
Sbjct: 47 QLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRA 105
Query: 133 LKYCQYAFDLKCDSVCVNPYHYERV 157
++ C++AF++K D VCVNPYHY+RV
Sbjct: 106 MELCEFAFNMKKDEVCVNPYHYQRV 130
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A
Resolution
pdb|1OZJ|B Chain B, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A
Resolution
Length = 144
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 74 ELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHK-NELKH 132
+LD L AITT + +KC+TI R+LDGRLQV+ RKG PHVIY R+WRWPDLH +EL+
Sbjct: 47 QLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRA 105
Query: 133 LKYCQYAFDLKCDSVCVNPYHYERVVSPGI 162
++ C++AF++K D VCVNPYHY+RV +P +
Sbjct: 106 MELCEFAFNMKKDEVCVNPYHYQRVETPVL 135
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX
pdb|3KMP|B Chain B, Crystal Structure Of Smad1-Mh1DNA COMPLEX
Length = 124
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 75 LDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHK-NELKHL 133
++ L A++ G PS CVTI R+LDGRLQV+ RKG PHVIY R+WRWPDL +ELK L
Sbjct: 40 MEELEKALSCPG-QPSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 98
Query: 134 KYCQYAFDLKCDSVCVNPYHYERVVS 159
+ C++ F K VC+NPYHY+RV S
Sbjct: 99 ECCEFPFGSKQKEVCINPYHYKRVES 124
>pdb|1KOP|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOP|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOQ|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOQ|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 223
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 247 GAIDSVWEPYPMYIARTRVNEPGNTSILLP 276
G + S+W PM + ++N+P + S LLP
Sbjct: 132 GRLSSIWNVMPMTAGKVKLNQPFDASTLLP 161
>pdb|2PO3|A Chain A, Crystal Structure Analysis Of Desi In The Presence Of Its
Tdp-Sugar Product
pdb|2PO3|B Chain B, Crystal Structure Analysis Of Desi In The Presence Of Its
Tdp-Sugar Product
Length = 424
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 505 HIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC-ILRLSFVKG 545
H P PH+ A +SL IG DD+RR+ +LRL +G
Sbjct: 345 HAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 515 IAPAISLSAAAGIGVDDLRRLCILRLSFVKG 545
IAP +L G G DD + + +L+L+F+KG
Sbjct: 117 IAPRKTLPIGPGTGPDDPKPVILLQLNFIKG 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,016,397
Number of Sequences: 62578
Number of extensions: 782459
Number of successful extensions: 1233
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 63
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)