Query psy10708
Match_columns 589
No_of_seqs 198 out of 374
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 16:35:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3701|consensus 100.0 4E-112 8E-117 893.2 33.5 390 46-581 11-408 (411)
2 cd00050 MH2 MH2 domain; C term 100.0 1.3E-72 2.7E-77 540.4 19.4 175 355-567 2-176 (176)
3 smart00524 DWB Domain B in dwa 100.0 2.6E-71 5.7E-76 529.2 18.6 171 359-567 1-171 (171)
4 PF03166 MH2: MH2 domain; Int 100.0 1E-67 2.2E-72 508.8 16.9 180 356-569 2-181 (181)
5 cd00049 MH1 MH1 is a small DNA 100.0 7.2E-42 1.6E-46 310.8 7.0 111 47-159 3-121 (121)
6 smart00523 DWA Domain A in dwa 100.0 2.1E-41 4.5E-46 302.8 8.2 99 61-161 10-109 (109)
7 PF03165 MH1: MH1 domain; Int 100.0 1.2E-41 2.6E-46 302.0 0.7 98 61-158 5-103 (103)
8 PF10401 IRF-3: Interferon-reg 97.8 0.00028 6E-09 68.5 12.8 117 411-576 63-179 (180)
9 KOG3663|consensus 86.2 1.1 2.3E-05 49.4 5.1 83 61-155 72-169 (518)
10 PF15509 DUF4650: Domain of un 53.7 30 0.00065 39.5 6.4 22 63-84 319-340 (520)
11 PF00498 FHA: FHA domain; Int 34.0 84 0.0018 24.9 4.6 44 424-474 23-67 (68)
12 KOG2884|consensus 31.1 27 0.00059 36.1 1.6 37 61-98 125-176 (259)
13 PF13939 TisB_toxin: Toxin Tis 28.1 38 0.00082 23.9 1.4 15 566-580 14-28 (28)
14 cd01452 VWA_26S_proteasome_sub 27.1 38 0.00082 33.7 1.8 40 57-98 121-175 (187)
15 COG5400 Uncharacterized protei 22.6 68 0.0015 32.1 2.5 46 426-480 99-144 (205)
16 PRK14754 toxic peptide TisB; P 22.5 49 0.0011 23.5 1.1 15 566-580 14-28 (29)
17 PF06577 DUF1134: Protein of u 21.7 1.2E+02 0.0026 29.9 4.0 48 423-479 51-98 (160)
No 1
>KOG3701|consensus
Probab=100.00 E-value=3.6e-112 Score=893.23 Aligned_cols=390 Identities=45% Similarity=0.727 Sum_probs=294.9
Q ss_pred ccccCCCCcc-CCCCC------ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCceEEEE
Q psy10708 46 STSSSSGGTS-GSPGP------GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYAR 118 (589)
Q Consensus 46 ~~~~~~~~~~-~~~~~------~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHviycR 118 (589)
..-.++||++ |.+++ .++||||||||+++||+|++||+++|..+++||||||+|||||||++||++|||||||
T Consensus 11 ~v~~~~~~r~~~~~~e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~CvtiprslD~Rlq~~~rkg~Phviy~r 90 (411)
T KOG3701|consen 11 AVKDLLGPRQLGGEDEKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIPRSLDGRLQVAHRKGFPHVIYCR 90 (411)
T ss_pred chhhccCccccCchhHHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECCCCCCccccccCCCCCCceEEEE
Confidence 4456899999 77776 7899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCc-ccccccccccccccCCCCeeeeCCccccceecCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCCC
Q psy10708 119 IWRWPDLHK-NELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSAGVTSTAPVLPTTGG 197 (589)
Q Consensus 119 lwRWPDL~~-~ELk~l~~C~~~~~~~~~~vC~NPYHY~Rv~~Pgidl~~l~l~~~pp~lv~~e~~~~~~~~~~~~~~~~~ 197 (589)
|||||||++ +|||++++|+++|+.+.+.||||||||+||+.|.+.++.+...+ .++...... ..+....+
T Consensus 91 lwRwpdl~~~~elk~l~~C~~a~~~~~~~vC~NPyHy~rv~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~- 161 (411)
T KOG3701|consen 91 LWRWPDLQKNHELKRLECCEHAFESKSDNVCINPYHYSRVESPPILPPPLSPNS-------PPNDALKTL-LDDGGVDI- 161 (411)
T ss_pred eecccccccchhheecccCCccccCCCCCeeeCCcccceeecCCCCCcccCCCC-------Cccccccch-hhcccccc-
Confidence 999999987 79999999999999999999999999999999977444333322 122100000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccCcccccCCCCCCCCCCCCCCcCCCCcccccccccCCCCCCcCCCCc
Q psy10708 198 MDVDGEAGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNTHPGAIDSVWEPYPMYIARTRVNEPGNTSILLPY 277 (589)
Q Consensus 198 ~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (589)
. ...++.+..+...... ..+.++ ...+
T Consensus 162 ~-~~~~P~n~~~~~~~~~--------------------~~~~tp--------------------------------~~~~ 188 (411)
T KOG3701|consen 162 V-NRSMPQNNHSSDLIGP--------------------HAPHTP--------------------------------DSSQ 188 (411)
T ss_pred c-ccCCCccccccccccc--------------------CCCCCC--------------------------------Cccc
Confidence 0 0011111111000000 000000 0000
Q ss_pred cccCCCCCCcccCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCccccccccccCCCCCCccCCCCCCCCCCCCCCCC
Q psy10708 278 FELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGLQTSCLFSPTGSSGLLSNQPPP 357 (589)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p 357 (589)
.+.|. .+.+ ..+. + ++.+..| .+.| ...++. ++++
T Consensus 189 ---~~~P~-------------------~~~~---p~s~------~------~~~~~~P---~~~P----~~~~~~-~~~~ 223 (411)
T KOG3701|consen 189 ---IPAPL-------------------GDGG---PSSD------S------SALPGLP---TDSP----DVGPVH-YEEP 223 (411)
T ss_pred ---CCCCC-------------------CCCC---CCCc------c------cccCCCC---CCCC----ccCccc-ccCC
Confidence 00000 0000 0000 0 0000000 0000 111222 4689
Q ss_pred CceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEecCCcEEEE
Q psy10708 358 EYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLH 437 (589)
Q Consensus 358 ~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~~~G~Vwl~ 437 (589)
++||+|+|||+++||||+|+| +.++|+||||+|+++++|||||+|+|++|++++|++|+|||+||+|++++ |+|||+
T Consensus 224 ~~WcsIaYyEl~~rVGE~f~v--~~~~~~vDG~~dps~~~rfcLgqlsn~~Rn~~~e~~R~~IG~GV~L~~~~-gdVw~~ 300 (411)
T KOG3701|consen 224 KSWCSIAYYELNTRVGETFHV--PGPSITVDGFTDPSNGSRFCLGQLSNVNRNEKVEKTRAHIGKGVQLSYEN-GDVWLY 300 (411)
T ss_pred cceeEEEEeeccccccceEEe--cCCceEEeeeecCCCCCceeeccccCCCccchhHHHHhhccCceeeeEec-CcEEEE
Confidence 999999999999999999999 67799999999999999999999999999999999999999999999997 999999
Q ss_pred ecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCc
Q psy10708 438 CLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAP 517 (589)
Q Consensus 438 nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp~~~~g~~P 517 (589)
|+|+++|||||++||+++|+++ ++||||+||++|||||+ +|.++ +++++.. |+
T Consensus 301 n~sd~pIFVqS~~ln~~~g~~~-~~v~ki~Pg~~iKvFd~-~~~~~-------------l~~s~~~----------g~-- 353 (411)
T KOG3701|consen 301 NLSDYPIFVQSPNLNYPNGRTL-DTVHKVPPGYSIKVFDF-EFAQQ-------------LPTSADP----------GF-- 353 (411)
T ss_pred ecCCCceeeeCCCCcCCCCCcc-cceEeeCCCceeEeech-HHHhh-------------hhhcccC----------CC--
Confidence 9999999999999999999999 89999999999999999 43221 1222222 22
Q ss_pred hhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHHHHHHHHccCC
Q psy10708 518 AISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMP 581 (589)
Q Consensus 518 ~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLqwLD~VL~qm~ 581 (589)
+++|+|++||+||||||||||++|+||+||+||||||||||+||||||+||+|||
T Consensus 354 ---------~~~~~l~~~ctIriSFvKGWG~~Y~Rq~It~~PCWiEvhl~~p~~~lD~vl~~~~ 408 (411)
T KOG3701|consen 354 ---------ESVDQLRKMCTIRISFVKGWGECYSRQDITSTPCWIEVHLNGPLQWLDTVLTQMG 408 (411)
T ss_pred ---------ccccccccceeEEEEEeccccccccccccccCcceEEEecCCcHHHHHHHHhhcC
Confidence 5899999999999999999999999999999999999999999999999999999
No 2
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins
Probab=100.00 E-value=1.3e-72 Score=540.37 Aligned_cols=175 Identities=58% Similarity=1.047 Sum_probs=163.4
Q ss_pred CCCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEecCCcE
Q psy10708 355 PPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDV 434 (589)
Q Consensus 355 ~~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~~~G~V 434 (589)
+++++||+|+|||||+||||+|++ ++++++||||+|+++++|||||+|+|++|++++|+||+|||+||+|++++ |+|
T Consensus 2 ~~~~~WCsIaY~El~~RVGe~f~~--~~~~~~VDGf~d~~~~~rfcLg~lsn~~R~~~ve~~R~~IG~Gv~L~~~~-g~V 78 (176)
T cd00050 2 SEPEHWCSIAYYELNTRVGETFKV--SGPNITVDGFTDPSNGSRFCLGQLSNVNRNETVEKTRRHIGKGVQLSYEN-GEV 78 (176)
T ss_pred CCCCceEEEEEEEccceecccEec--cCCcEEEEecccCCCCCEEEecccCCCCCcHHHHHHHHhccCCEEEEEeC-CeE
Confidence 478999999999999999999999 78899999999999999999999999999999999999999999999997 999
Q ss_pred EEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy10708 435 WLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGG 514 (589)
Q Consensus 435 wl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp~~~~g 514 (589)
|++|+|++||||||++||+++++++ ++||||+||++|||||+++|+.+|.++. . .+
T Consensus 79 w~~~~S~~~VFVqS~~l~~~~~~~~-~~V~Kv~pg~~lKvFd~~~f~~~l~~~~--------------~---------~~ 134 (176)
T cd00050 79 WAYNLSDHPIFVQSPTLDYPLGRPL-LTVHKVPPGYSLKVFDFEQFEQLLRQAA--------------G---------ST 134 (176)
T ss_pred EEEEcCCCCEEEcCCCCCcccCCCC-cceEEeCCCCEEEEeCHHHHHHHHHhhh--------------c---------cc
Confidence 9999999999999999999999996 6999999999999999999987665431 1 12
Q ss_pred CCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcc
Q psy10708 515 IAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLH 567 (589)
Q Consensus 515 ~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~ 567 (589)
+ +++|+|+|||+||||||||||++|+||+||+||||||||||
T Consensus 135 ~-----------~~~~~l~~~c~iriSFvKGWG~~Y~Rq~it~tPCWiEi~l~ 176 (176)
T cd00050 135 F-----------DGVYDLRRMCTIRISFVKGWGEDYPRQDITSTPCWIEVHLN 176 (176)
T ss_pred C-----------ccHHHHHhhceEEEEEeccccccccccccCCCceEEEEEcC
Confidence 2 58999999999999999999999999999999999999997
No 3
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=100.00 E-value=2.6e-71 Score=529.16 Aligned_cols=171 Identities=60% Similarity=1.091 Sum_probs=159.7
Q ss_pred ceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEecCCcEEEEe
Q psy10708 359 YWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHC 438 (589)
Q Consensus 359 ~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~~~G~Vwl~n 438 (589)
+||+|+|||+|+||||+|++ +.++|+||||+|+++++|||||+|+|+||++++|+||+|||+||+|++++ |+||++|
T Consensus 1 ~WcsIaYyEl~~rVGe~f~~--~~p~v~Vdgf~d~~~~~rfcLg~lsn~nR~~~~~~~R~~IG~Gv~L~~~~-g~Vw~~~ 77 (171)
T smart00524 1 SWCSIAYYELNTRVGETFKV--SSPSVTVDGFTDPSDGNRFCLGQLSNVNRNEATELIRKHIGKGVQLSYEN-GDVWLYN 77 (171)
T ss_pred CCcEEEEEEecccccceEEc--cCCeEEEEecccCCCCCeeEeccCCCCCccHHHHHHHHhccCceEEEEeC-CeEEEEE
Confidence 69999999999999999999 78999999999999999999999999999999999999999999999996 9999999
Q ss_pred cCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCch
Q psy10708 439 LSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPA 518 (589)
Q Consensus 439 lS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp~~~~g~~P~ 518 (589)
+|++||||||++||+++|+++ |+||||+||++|||||+++|+.+|.+. +. .++
T Consensus 78 ~s~~~VFVqS~~~~~~~~~~~-~~V~Kv~pg~~lKvFd~~~f~~~l~~~--------------~~---------~~~--- 130 (171)
T smart00524 78 RSDSPIFVQSPYLDEPGGRTL-DTVHKLPPGYSIKVFDMEKFAQLLARE--------------LA---------KGF--- 130 (171)
T ss_pred cCCCCeEEcCCCcccccCCCC-cceEEECCCCeEEEeChHHHHHHHHhh--------------hc---------ccC---
Confidence 999999999999999999999 799999999999999999987655332 11 122
Q ss_pred hhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcc
Q psy10708 519 ISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLH 567 (589)
Q Consensus 519 ~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~ 567 (589)
+++|||+|||+||||||||||++|+||+||+||||||||||
T Consensus 131 --------~~~~~l~~~c~iriSFvKGWG~~Y~Rq~it~tPCWiEi~l~ 171 (171)
T smart00524 131 --------EGVYDLARMCTIRISFVKGWGPDYSRQTITSTPCWIEVHLN 171 (171)
T ss_pred --------ccccchhhheeEEEEEecccCCcccccccccCceEEEEEcC
Confidence 58999999999999999999999999999999999999997
No 4
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the SMAD (Mothers against decapentaplegic (MAD) homologue) (also called MH2 for MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C terminus of MH2 [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1MK2_A 1U7F_A 1MJS_A 1KHU_A 1DD1_C 1G88_A 1U7V_B 1MR1_B 1YGS_A 3DIT_B ....
Probab=100.00 E-value=1e-67 Score=508.81 Aligned_cols=180 Identities=50% Similarity=0.975 Sum_probs=153.9
Q ss_pred CCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEecCCcEE
Q psy10708 356 PPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVW 435 (589)
Q Consensus 356 ~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~~~G~Vw 435 (589)
++++||+|+|||+++||||+|++ +.++|+||||+|+++++|||||+|+|++|+++++++|+|||+||+|+++++|+||
T Consensus 2 ~~~~Wc~I~Y~E~~~rVG~~f~~--~~~~v~idG~~d~~~~~r~~Lg~~~n~~R~~~~~~~R~~IG~Gi~l~~~~~G~V~ 79 (181)
T PF03166_consen 2 EPEIWCSIAYYELNTRVGEAFKA--RSPSVIIDGFTDPSDGDRFCLGQLSNVNRDSKTEKIRRHIGKGIKLSYEEDGNVW 79 (181)
T ss_dssp S-SSSEEEEEEETTEEESEEEEE--ESSEEEEESSSSSSSSSEEECTT---TT--HHHHHHHTTCTT-EEEEEETTTEEE
T ss_pred CCCeeEEEEEEecCCeEcceeEc--cCCeEEEeeccCCCCCCcEecCccCCCCCChHHhhHHheecCcEEEEEecCCeEE
Confidence 68999999999999999999999 7889999999999999999999999999999999999999999999999789999
Q ss_pred EEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy10708 436 LHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGI 515 (589)
Q Consensus 436 l~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp~~~~g~ 515 (589)
++|+|++||||||+++|.+++.+++ +|+||+||+++||||+++|++.|+++....+
T Consensus 80 l~n~s~~pVFVqS~~~n~~~~~~~~-~V~Kv~pg~~~kvFd~~~f~~~l~~~~~~~~----------------------- 135 (181)
T PF03166_consen 80 LYNRSDSPVFVQSPTLNYQHGFHPG-TVCKVPPGYSLKVFDMEKFAQLLRQAVRRGY----------------------- 135 (181)
T ss_dssp EEE-SSS-EEEE-HHHHHHTTSTTT-SEEEE-TT-EEEEEEHHHHHHHHHHHHTTHH-----------------------
T ss_pred EEECCCCCEEEccCCCCcccCcCCC-CcEEeCCCceeeccCHHHHHHHHHhhhcccc-----------------------
Confidence 9999999999999999999998886 9999999999999999999887766533211
Q ss_pred CchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchh
Q psy10708 516 APAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRA 569 (589)
Q Consensus 516 ~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~p 569 (589)
.|...+++|+++|+||||||||||++|+||+||+||||||||||+|
T Consensus 136 --------~~~~~~~~l~~~c~iriSFvKGWG~~Y~R~~it~~PCWiEi~l~~p 181 (181)
T PF03166_consen 136 --------EAEEDVDELRKMCTIRISFVKGWGPEYRRQDITSCPCWIEIHLNGP 181 (181)
T ss_dssp --------HHTTTHHGGGGGGEEEEEESSB-STTSSSSSGGGSSSEEEEEEHH-
T ss_pred --------ccccchhhhhhcceEEEEEEcccCCcccccCcccCCeEEEEEccCC
Confidence 1134699999999999999999999999999999999999999987
No 5
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove. MH1 is present in Smad proteins, an important family of proteins involved in TGF-beta signalling and frequent targets of tumorigenic mutations. Also known as Domain A in dwarfin family proteins.
Probab=100.00 E-value=7.2e-42 Score=310.79 Aligned_cols=111 Identities=48% Similarity=0.888 Sum_probs=103.5
Q ss_pred cccCCCCcc-CCCCC------ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCceEEEEe
Q psy10708 47 TSSSSGGTS-GSPGP------GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARI 119 (589)
Q Consensus 47 ~~~~~~~~~-~~~~~------~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHviycRl 119 (589)
...++||++ |++++ +++|||||||++ +||.|++||+++|+.+++||+|||+ |||||+++|+++||||||||
T Consensus 3 ~~~ll~~~~~~~~~e~~~~k~~~sLlKkLKk~~-~le~L~~AV~s~g~~~t~CV~i~r~-D~rl~~~~r~~~phv~~crl 80 (121)
T cd00049 3 VKRLLGEKKIGGEEEKWKKKAAESLLKKLKKKI-QLEELEDAVESRGGPPTRCVLIPRS-DGRLQVSHRKGLPHVIYCRV 80 (121)
T ss_pred hHHhhcccccCcchHHHHHHHHHHHHHHHhccc-CHHHHHHHHHcCCCCCCCeEEeccc-cccccccccCCCcceEEEee
Confidence 456899998 66555 899999999976 9999999999999989999999998 99999999999999999999
Q ss_pred ecCCCCCc-ccccccccccccccCCCCeeeeCCccccceec
Q psy10708 120 WRWPDLHK-NELKHLKYCQYAFDLKCDSVCVNPYHYERVVS 159 (589)
Q Consensus 120 wRWPDL~~-~ELk~l~~C~~~~~~~~~~vC~NPYHY~Rv~~ 159 (589)
||||||++ +|||++++|+++|+.+.+.||||||||+||+.
T Consensus 81 wRWpDL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~ 121 (121)
T cd00049 81 WRWPDLRSNHELKRLETCEHAFDSKPDEVCINPYHYSRVVR 121 (121)
T ss_pred eeccccCchHhheeCccCCCccccCCCeEEeCCceeeeecC
Confidence 99999976 79999999999999999999999999999984
No 6
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=100.00 E-value=2.1e-41 Score=302.83 Aligned_cols=99 Identities=51% Similarity=0.962 Sum_probs=95.5
Q ss_pred ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCceEEEEeecCCCCCc-cccccccccccc
Q psy10708 61 GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHK-NELKHLKYCQYA 139 (589)
Q Consensus 61 ~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHviycRlwRWPDL~~-~ELk~l~~C~~~ 139 (589)
.++||||||++ +||+|++||+++|..+|+||+|||++||||||++|+++||||||||||||||++ +|||++++|+++
T Consensus 10 ~~sL~KklK~k--~le~L~~AV~s~g~~~t~CV~i~~~~dgrl~~~~~~~~phvi~crLfRWpdL~s~~eLk~l~~C~~~ 87 (109)
T smart00523 10 TESLLKKLKKK--QLEELLQAVESKGGPPTRCVLIPRSLDGRLQVAHRKGLPHVLYCRLFRWPDLQSPHELKALPTCEHA 87 (109)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHcCCCCCCCeEEeCcccCcccccccCCCCCcEEEEEEeeCCCCCCHHHceecccCCCc
Confidence 67999999997 999999999999999999999999999999999999999999999999999975 999999999999
Q ss_pred ccCCCCeeeeCCccccceecCC
Q psy10708 140 FDLKCDSVCVNPYHYERVVSPG 161 (589)
Q Consensus 140 ~~~~~~~vC~NPYHY~Rv~~Pg 161 (589)
|+++.+.||||||||+||+.|+
T Consensus 88 ~~~~~~~vC~NPyHy~rv~~p~ 109 (109)
T smart00523 88 FESKSDEVCCNPYHYSRVERPE 109 (109)
T ss_pred ccCCCCeEEeCCceEEEeecCC
Confidence 9999999999999999999874
No 7
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3QSV_A 1MHD_A 1OZJ_A 3KMP_B.
Probab=100.00 E-value=1.2e-41 Score=302.00 Aligned_cols=98 Identities=54% Similarity=1.036 Sum_probs=76.9
Q ss_pred ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCceEEEEeecCCCCC-ccccccccccccc
Q psy10708 61 GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLH-KNELKHLKYCQYA 139 (589)
Q Consensus 61 ~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHviycRlwRWPDL~-~~ELk~l~~C~~~ 139 (589)
+++|||||||++++||+|++||+|+|+.+++||+|||++||||||+++|++||||||||||||||+ .+|||+++.|+|+
T Consensus 5 ~~sLlkkLK~~~~~le~L~~Av~s~g~~~t~CV~i~r~~dgrl~v~~~k~~phvl~crlwRwpdL~~~~eLk~l~~C~~~ 84 (103)
T PF03165_consen 5 IKSLLKKLKKKIGQLEELLKAVESRGDPPTKCVTIPRSLDGRLQVSGRKGLPHVLYCRLWRWPDLRHSHELKRLPHCRFA 84 (103)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHHHCTTTSTS---EEE--TTS-EEETTEEE-HHHHHHHHHT-TT--SCCCEEE-TT-TT-
T ss_pred HHHHHHHHccccchHHHHHHHHhcCCCCCCCcEEecCccCccccccccccCceEEEEEEechhhcCCHHhcccCCCCCCh
Confidence 579999999987899999999999999999999999999999999999999999999999999995 5999999999999
Q ss_pred ccCCCCeeeeCCcccccee
Q psy10708 140 FDLKCDSVCVNPYHYERVV 158 (589)
Q Consensus 140 ~~~~~~~vC~NPYHY~Rv~ 158 (589)
|+.+.+.||||||||+|||
T Consensus 85 ~~~~~~~vC~NPyHy~rv~ 103 (103)
T PF03165_consen 85 FDSKNDEVCCNPYHYSRVC 103 (103)
T ss_dssp GGG--SEEE--GGGEEE--
T ss_pred hhcCCCCEEeCCcEeeecC
Confidence 9999999999999999997
No 8
>PF10401 IRF-3: Interferon-regulatory factor 3; InterPro: IPR019471 This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha, beta-stimulated gene). IRF-3 pre-exists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1J2F_A 1QWT_A 3A77_B 1ZOQ_A 3DSH_A.
Probab=97.83 E-value=0.00028 Score=68.46 Aligned_cols=117 Identities=24% Similarity=0.303 Sum_probs=81.5
Q ss_pred hhhHHHHHcccCceEEEEecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHH
Q psy10708 411 DQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAAT 490 (589)
Q Consensus 411 ~~ve~tR~hIGkGV~L~~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~ 490 (589)
+.++++..++++||.|...+ ++||+++++...||...+...... . -+|+.-+...||||+++|.++|++-
T Consensus 63 ~~~~~lL~~l~rGl~L~~~~-~gI~akRlc~~~Vfw~g~~~~~~~--~----P~kL~r~~~~~lFd~~~F~~~L~~~--- 132 (180)
T PF10401_consen 63 EYTERLLNHLERGLLLWSNP-QGIYAKRLCQCRVFWSGPEAPPSD--E----PNKLEREEPVKLFDTQQFLRELQRF--- 132 (180)
T ss_dssp HHHHHHHCCTTT-EEEEEET-TEEEEEE-SSS-EEEECCTSS-S---S-----SE--CTS-EEEEEHHHHHHHHHHH---
T ss_pred HHHHHHHHhhcCcEEEEEeC-CEEEEEecCCceEEEEcCCccCCC--C----CcccCcCCceeeccHHHHHHHHHHH---
Confidence 56899999999999999985 789999999999999988765433 2 3489999999999999987766432
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhH
Q psy10708 491 AQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRAL 570 (589)
Q Consensus 491 ~q~aa~~q~~~v~g~~~gp~~~~g~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pL 570 (589)
..+ ++-.|. +.|-++|..=|-. .+...+.+.+++|...-+=
T Consensus 133 -----------~~~--------~~~~P~-----------------~~i~LcfGe~~~~---~~~~~~klI~v~v~p~~a~ 173 (180)
T PF10401_consen 133 -----------PQG--------GGPSPD-----------------YQIYLCFGEEWPD---GRPWEKKLITVQVEPVFAR 173 (180)
T ss_dssp -----------HTT--------SSS---------------------EEEEEESSSSTT---SSCCCCSSEEEEEEEHHHH
T ss_pred -----------hcC--------CCCCCC-----------------cEEEEEEcccCCC---CCCccCceEEEEEEeHHHH
Confidence 222 122222 4688888665543 2678899999999998888
Q ss_pred HHHHHH
Q psy10708 571 QLLDEV 576 (589)
Q Consensus 571 qwLD~V 576 (589)
+|++.+
T Consensus 174 ~l~~~~ 179 (180)
T PF10401_consen 174 QLLEMA 179 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888754
No 9
>KOG3663|consensus
Probab=86.17 E-value=1.1 Score=49.36 Aligned_cols=83 Identities=19% Similarity=0.430 Sum_probs=52.2
Q ss_pred ccchhhhhhh--chhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCceEEEEeecC----------CCCCc-
Q psy10708 61 GYKSDNEEQE--KRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRW----------PDLHK- 127 (589)
Q Consensus 61 ~~sLvKkLK~--~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHviycRlwRW----------PDL~~- 127 (589)
|--||-|||| +.+--|..+.+|+ |..+..||.--...-|+++--. ++-+ -=||||- =-|.+
T Consensus 72 ASRLLaKlrKDIr~e~rEdFVltIt--Gkk~p~CVlSnpDQKGKmRRID--CLRQ--ADKVWRLDLVmVILFKgIPLEST 145 (518)
T KOG3663|consen 72 ASRLLAKLRKDIRPEYREDFVLTIT--GKKPPCCVLSNPDQKGKMRRID--CLRQ--ADKVWRLDLVMVILFKGIPLEST 145 (518)
T ss_pred HHHHHHHHHhhcchHHHHHHHhhhc--CCCCCceeecCccccCceeehh--hhhh--hchheeeeeeeEEeecccccccC
Confidence 5678999987 3355788888986 6678999987665566543100 0000 0134442 22433
Q ss_pred --ccccccccccccccCCCCeeeeCCcccc
Q psy10708 128 --NELKHLKYCQYAFDLKCDSVCVNPYHYE 155 (589)
Q Consensus 128 --~ELk~l~~C~~~~~~~~~~vC~NPYHY~ 155 (589)
..|..-+.|-.+ ..||||||..
T Consensus 146 DGERL~ksp~C~hP------~LCVqPhHi~ 169 (518)
T KOG3663|consen 146 DGERLEKSPQCSHP------GLCVQPHHIG 169 (518)
T ss_pred chhhhhcCcccCCC------ccccccceee
Confidence 566777788543 6999999976
No 10
>PF15509 DUF4650: Domain of unknown function (DUF4650)
Probab=53.74 E-value=30 Score=39.45 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.8
Q ss_pred chhhhhhhchhhHHHHHHHHhc
Q psy10708 63 KSDNEEQEKRDELDSLITAITT 84 (589)
Q Consensus 63 sLvKkLK~~~~~Le~L~~Av~s 84 (589)
.||||||-||+.|..|..--..
T Consensus 319 KLLKKLKAKKkKLAsL~s~~~~ 340 (520)
T PF15509_consen 319 KLLKKLKAKKKKLASLMSSPQN 340 (520)
T ss_pred HHHHHHHHhHHHHHHHHhhhhc
Confidence 6899999988889888776543
No 11
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=34.01 E-value=84 Score=24.95 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=28.0
Q ss_pred eEEEEecCCcEEEEec-CCceEEeeccccCcccCCCCCCceEEcCCCCeEEE
Q psy10708 424 VQLDLRGEGDVWLHCL-SDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKV 474 (589)
Q Consensus 424 V~L~~~~~G~Vwl~nl-S~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKV 474 (589)
..|.+++++.+|++.+ |.+.+||+...+.. ..-++|.+|..|++
T Consensus 23 a~i~~~~~~~~~i~d~~s~ngt~vng~~l~~-------~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 23 ARISFDDDGQFYIEDLGSTNGTFVNGQRLGP-------GEPVPLKDGDIIRF 67 (68)
T ss_dssp EEEEEETTEEEEEEESSSSS-EEETTEEESS-------TSEEEE-TTEEEEE
T ss_pred eEEEEeceeeEEEEeCCCCCcEEECCEEcCC-------CCEEECCCCCEEEc
Confidence 4567775348999997 79999996644332 14566666666653
No 12
>KOG2884|consensus
Probab=31.08 E-value=27 Score=36.15 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=29.2
Q ss_pred ccchhhhhhhch---------------hhHHHHHHHHhcCCCCCCceeEeccc
Q psy10708 61 GYKSDNEEQEKR---------------DELDSLITAITTNGSHPSKCVTIQRT 98 (589)
Q Consensus 61 ~~sLvKkLK~~~---------------~~Le~L~~Av~s~g~~~s~CVtipr~ 98 (589)
-..|.|+|||.+ +.|++++.|+..+ ++.+.||+||+.
T Consensus 125 Lv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~-~~gshlv~Vppg 176 (259)
T KOG2884|consen 125 LVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK-GDGSHLVSVPPG 176 (259)
T ss_pred HHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC-CCCceEEEeCCC
Confidence 556778888743 3488899999887 478999999986
No 13
>PF13939 TisB_toxin: Toxin TisB, type I toxin-antitoxin system
Probab=28.10 E-value=38 Score=23.93 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHccC
Q psy10708 566 LHRALQLLDEVLHTM 580 (589)
Q Consensus 566 L~~pLqwLD~VL~qm 580 (589)
+...||+||.||++.
T Consensus 14 ~va~lqlldavlk~~ 28 (28)
T PF13939_consen 14 IVAVLQLLDAVLKYF 28 (28)
T ss_pred HHHHHHHHHHHHhhC
Confidence 346899999999874
No 14
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.10 E-value=38 Score=33.75 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCCCccchhhhhhhc---------------hhhHHHHHHHHhcCCCCCCceeEeccc
Q psy10708 57 SPGPGYKSDNEEQEK---------------RDELDSLITAITTNGSHPSKCVTIQRT 98 (589)
Q Consensus 57 ~~~~~~sLvKkLK~~---------------~~~Le~L~~Av~s~g~~~s~CVtipr~ 98 (589)
+|++.+.+.|+|||+ .+-||.|.++|.+. +.+.+|+||-.
T Consensus 121 d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~--~~s~~~~~~~~ 175 (187)
T cd01452 121 DEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGK--DGSHLVSVPPG 175 (187)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCC--CCceEEEeCCC
Confidence 455677899999982 34599999999654 45899999864
No 15
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=68 Score=32.11 Aligned_cols=46 Identities=30% Similarity=0.466 Sum_probs=33.0
Q ss_pred EEEecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHH
Q psy10708 426 LDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQC 480 (589)
Q Consensus 426 L~~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f 480 (589)
|.| ++|..|.+|..+|.||-|.|.+--.-|..-. .| -+-|+|++..
T Consensus 99 ltY-GeG~LytKn~g~h~vFWQGPslGwD~GGqgs-Rv-------mmLvYnL~~v 144 (205)
T COG5400 99 LTY-GEGTLYTKNAGDHKVFWQGPSLGWDWGGQGS-RV-------MMLVYNLDDV 144 (205)
T ss_pred eee-ccceEEecCCCCcceEeeCCccccccCCCce-EE-------EEEEecCCCH
Confidence 566 5799999999999999999998655444221 22 2567887653
No 16
>PRK14754 toxic peptide TisB; Provisional
Probab=22.53 E-value=49 Score=23.48 Aligned_cols=15 Identities=53% Similarity=0.687 Sum_probs=12.3
Q ss_pred cchhHHHHHHHHccC
Q psy10708 566 LHRALQLLDEVLHTM 580 (589)
Q Consensus 566 L~~pLqwLD~VL~qm 580 (589)
+..+||+||.||+++
T Consensus 14 iva~lqlldavlk~~ 28 (29)
T PRK14754 14 IVAALQLLDAVLKYL 28 (29)
T ss_pred HHHHHHHHHHHHHhh
Confidence 346899999999875
No 17
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.68 E-value=1.2e+02 Score=29.86 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=34.4
Q ss_pred ceEEEEecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHH
Q psy10708 423 GVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQ 479 (589)
Q Consensus 423 GV~L~~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~ 479 (589)
++-|.| ++|.++.++..+++||.|.|.+-...|..- -|+ -+-|+|+..
T Consensus 51 ~~GlrY-GeG~L~~k~~g~~~vyWqGPSiG~D~G~~~----~r~----~~LVYnL~~ 98 (160)
T PF06577_consen 51 VVGLRY-GEGTLYTKNAGQHKVYWQGPSIGFDFGGNG----SRV----FMLVYNLPD 98 (160)
T ss_pred EEEEEe-cccEEEEcCCCeeEEEEeCCceeEeecCCc----eEE----EEEEEcCCC
Confidence 455677 689999999999999999999865544432 222 245677754
Done!