Query psy10708
Match_columns 589
No_of_seqs 198 out of 374
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 16:36:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dd1_A SMAD4; B-sheet sandwich 100.0 9E-91 3.1E-95 700.4 19.7 259 331-589 7-268 (268)
2 1ygs_A SMAD4; tumor suppressor 100.0 4.8E-88 1.6E-92 670.9 19.3 234 356-589 1-234 (234)
3 3gmj_D Protein mothers against 100.0 1.6E-78 5.4E-83 604.8 19.3 197 348-583 40-237 (245)
4 1khx_A SMAD2; TGF-beta signali 100.0 2E-76 6.9E-81 584.8 19.5 195 350-583 25-219 (227)
5 3qsv_A SMAD4, mothers against 100.0 1.1E-49 3.9E-54 364.4 0.8 121 41-161 6-132 (132)
6 1ozj_A SMAD 3; MAD homology do 100.0 3.1E-48 1.1E-52 358.9 -0.5 129 39-179 4-142 (144)
7 3kmp_A SMAD1-MH1; protein-DNA 100.0 5.6E-45 1.9E-49 330.9 -0.6 116 43-159 2-124 (124)
8 3a77_A IRF-3, interferon regul 97.1 0.0055 1.9E-07 61.4 13.5 173 356-576 14-194 (242)
9 3dsh_A IRF-5, interferon regul 96.6 0.0051 1.7E-07 61.8 8.6 119 412-577 82-200 (246)
10 2jmv_A Scytovirin; protein, su 23.9 1.4E+02 0.0047 25.3 5.5 37 24-60 56-92 (95)
No 1
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=100.00 E-value=9e-91 Score=700.40 Aligned_cols=259 Identities=80% Similarity=1.295 Sum_probs=206.2
Q ss_pred cccCC-CCCCccCC--CCCCCCCCCCCCCCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCC
Q psy10708 331 SKESG-LQTSCLFS--PTGSSGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNV 407 (589)
Q Consensus 331 ~p~~~-~~~~~~~~--~~~~~~~~~~~~~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv 407 (589)
+||++ ++++||+. +...++++.+++++++||+|+|||+|+||||+|++.++.++|+||||+||++++|||||+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WCsIaYyEln~rVGe~f~~~~~~~~v~VDGf~dps~~~RfCLg~lsN~ 86 (268)
T 1dd1_A 7 HPPMPPHPGHYWPVHNELAFQPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNV 86 (268)
T ss_dssp ECCCCC--------------CCCSCCSCCCSEEEEEEEEETTEECSCCEEEETTCSEEEEESCCCCCCTTEEECSSCCCT
T ss_pred CCCCCCCCCcccccccccccCCccccCCCCCceEEEEEEecCceecceEEecCCCCEEEEecCCCCCCCCeeecccccCC
Confidence 44544 45678875 3345567888899999999999999999999999988899999999999999999999999999
Q ss_pred CCChhhHHHHHcccCceEEEEecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHH
Q psy10708 408 HRTDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQ 487 (589)
Q Consensus 408 ~R~~~ve~tR~hIGkGV~L~~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~ 487 (589)
+|+++++++|+|||+||+|+++++|+|||+|+|+++|||||++||+++|++|+|+||||+||++|||||+++|+++|+++
T Consensus 87 ~R~~~ve~~R~~IG~GV~L~~~~~G~Vwl~nlS~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKVFD~~~f~~~l~~~ 166 (268)
T 1dd1_A 87 HRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQ 166 (268)
T ss_dssp TCCHHHHHHHTTTTTCEEEEEETTTEEEEEECSSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEEECHHHHHHHHHHH
T ss_pred CccHHHHHHHHhhcCceEEEEecCCcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeccHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcc
Q psy10708 488 AATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLH 567 (589)
Q Consensus 488 ~~~~q~aa~~q~~~v~g~~~gp~~~~g~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~ 567 (589)
++++|+|+..|+|.+.|.++++++++|+.|+++|+++|+++||+|+|||+||||||||||++|+||+||+||||||||||
T Consensus 167 ~~~~q~a~~~q~a~~~g~~~~~~~~~g~~p~~~~~~~a~~~v~~L~~~C~iRISFVKGWG~~Y~Rq~ItstPCWIEI~L~ 246 (268)
T 1dd1_A 167 AATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLH 246 (268)
T ss_dssp HHHHTTTTCC--------------------------CCSCCHHHHHGGGEEEEEESCCCSTTSSCCSGGGSSSEEEEEEH
T ss_pred HHhhhhhhhhhhhhhccccCCcccccccccccccccccccchhhhhhceeEEEEEEcCCCCCCCCCCCCcCCeEEEEEcC
Confidence 99988887788899999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHccCCCCCCCCCC
Q psy10708 568 RALQLLDEVLHTMPIDGHRALE 589 (589)
Q Consensus 568 ~pLqwLD~VL~qm~~~~~~~~~ 589 (589)
+||||||+||+|||+++++++|
T Consensus 247 ~pLq~LD~vl~~m~~~~~~~~~ 268 (268)
T 1dd1_A 247 RALQLLDEVLHTMPIADPQPLD 268 (268)
T ss_dssp HHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999998865
No 2
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=100.00 E-value=4.8e-88 Score=670.94 Aligned_cols=234 Identities=88% Similarity=1.439 Sum_probs=186.6
Q ss_pred CCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEecCCcEE
Q psy10708 356 PPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVW 435 (589)
Q Consensus 356 ~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~~~G~Vw 435 (589)
+|++||+|+|||+|+||||+|+++++.++|+||||+||++++|||||+|+|++|+++++++|+|||+||+|+++++|+||
T Consensus 1 ~p~~WcsIaYyEl~~rVGe~f~~~~~~~~v~IDG~~dps~~~rfcLg~lsN~~R~~~~e~~R~~IG~GV~L~~~~~G~Vw 80 (234)
T 1ygs_A 1 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVW 80 (234)
T ss_dssp CCSEEEEEEEEETTEEEEEEEEEETTCSEEEEESSCCTTCSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEETTTEEE
T ss_pred CCCcceEEEEEecCceecceEEecCCCCEEEEecCcCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEecCCcEE
Confidence 36799999999999999999999888999999999999999999999999999999999999999999999999889999
Q ss_pred EEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy10708 436 LHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGI 515 (589)
Q Consensus 436 l~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp~~~~g~ 515 (589)
|+|+|++||||||++||+++|++|+++||||+||++|||||+++|+++|+++++++|+++..|+|.+.|.+++++.++|+
T Consensus 81 ~~n~S~~~IFVqS~~ln~~~~~~p~~~V~Ki~pg~~lKvFd~~~f~~~l~~~~~~~q~~~~~~~a~~~g~~~~~~~~~g~ 160 (234)
T 1ygs_A 81 VRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGI 160 (234)
T ss_dssp EEECSSSCEEEECHHHHHTTTCCTTCCCEEECTTCEEEEECHHHHHHHHHHHHHHHTC----------------------
T ss_pred EEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeCcHHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999988888999999988888888899
Q ss_pred CchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHHHHHHHHccCCCCCCCCCC
Q psy10708 516 APAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPIDGHRALE 589 (589)
Q Consensus 516 ~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLqwLD~VL~qm~~~~~~~~~ 589 (589)
+|+++++++|+++||+|+|||+||||||||||++|+||+||+||||||||||+||||||+||+|||++++++++
T Consensus 161 ~p~~~~~~~a~~~v~~L~~~c~iRISFvKGWG~~Y~Rq~It~tPCWiEI~l~~~l~~ld~vl~~m~~~~~~~~~ 234 (234)
T 1ygs_A 161 APAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD 234 (234)
T ss_dssp -------------CHHHHHTTEEEEESSCCCSTTSSCSSGGGSSSEEEEEEHHHHHHHHHHHHTC---------
T ss_pred ccccccccccccchhhhhhceEEEEEEEcCCCCCCCCCCCCCCCeEEEEEcCHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864
No 3
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-78 Score=604.80 Aligned_cols=197 Identities=43% Similarity=0.822 Sum_probs=177.5
Q ss_pred CCCCCCCCCCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCC-CeeeecCccCCCCChhhHHHHHcccCceEE
Q psy10708 348 SGLLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGG-NRFCLGALSNVHRTDQSERARLHIGKGVQL 426 (589)
Q Consensus 348 ~~~~~~~~~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~-~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L 426 (589)
.+++.+ +++++||+|+|||+|+||||+|+| ++++|+||||+||+++ +|||||+|+|++|++++|+||+|||+||+|
T Consensus 40 ~~~v~y-~ep~~WcsIaYyEln~RVGe~F~a--~~~sv~IDGf~dps~~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L 116 (245)
T 3gmj_D 40 VAQVSY-SEPAFWASIAYYELNCRVGEVFHC--NNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHL 116 (245)
T ss_dssp --------CCSCSEEEEEEETTEEEEEEEEE--CSSEEEEESSCCCCTTTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEE
T ss_pred cccccc-cCCCceeEEEEeecCceeccceee--cCCeEEEeCCcCCCCCCCceeecCccCCCCcHHHHHHHHHHhcCeEE
Confidence 345665 689999999999999999999999 7899999999999987 999999999999999999999999999999
Q ss_pred EEecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy10708 427 DLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHI 506 (589)
Q Consensus 427 ~~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~ 506 (589)
++++ |+|||+|+|+++|||||++||+++|++++ +||||+||+++||||+++|++.|. ++++
T Consensus 117 ~~~~-G~V~~~nlS~~~IFVqS~~~n~~~g~~~~-tV~KI~pg~slKiFd~~~fa~~L~--------------qs~~--- 177 (245)
T 3gmj_D 117 YYVT-GEVYAECLSDSAIFVQSRNCNYQHGFHPS-TVCKIPPGCSLKIFNNQEFAQLLS--------------QSVN--- 177 (245)
T ss_dssp EEET-TEEEEEECSSSCEEEEEHHHHHHTTCCTT-CCEEECTTCEEEEECHHHHHHHHH--------------HTTT---
T ss_pred EEEC-CEEEEEecCCCcEEECCCcccccCCCCcc-ceEEeCCCCeEEEeCHHHHHHHHH--------------HHhh---
Confidence 9986 99999999999999999999999999996 999999999999999998765443 2333
Q ss_pred CCCCCCCCCCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHHHHHHHHccCCCC
Q psy10708 507 PGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPID 583 (589)
Q Consensus 507 ~gp~~~~g~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLqwLD~VL~qm~~~ 583 (589)
.|+ ++||+|+|||+||||||||||++|+||+||+||||||||||+||||||+||+|||-.
T Consensus 178 ------~g~-----------~~v~~L~~~CtiRiSFvKGWG~~Y~Rq~ItstPCWiEI~L~~pLq~LD~vL~qmg~p 237 (245)
T 3gmj_D 178 ------NGF-----------EAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSP 237 (245)
T ss_dssp ------TCS-----------HHHHHHGGGGEEEEEESSCCSTTSSCCSGGGSSSEEEEEEHHHHHHHHHHHTSSCCC
T ss_pred ------cCC-----------chhhhhhhcceeeeEeecCcCcccccCCcccCCEEEEEEcChHHHHHHHHHHhcCCC
Confidence 234 479999999999999999999999999999999999999999999999999999953
No 4
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=100.00 E-value=2e-76 Score=584.79 Aligned_cols=195 Identities=46% Similarity=0.883 Sum_probs=180.4
Q ss_pred CCCCCCCCCceEEEEEEeecccccceeeecCCCCeEEEcCCcCCCCCCeeeecCccCCCCChhhHHHHHcccCceEEEEe
Q psy10708 350 LLSNQPPPEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARLHIGKGVQLDLR 429 (589)
Q Consensus 350 ~~~~~~~p~~WCsIaYyEln~RVGe~F~v~s~~psV~VDGf~Dps~~~RFCLG~LsNv~R~~~ve~tR~hIGkGV~L~~~ 429 (589)
++. ++++++||+|+|||+|+||||+|+| +.++|+||||+||++++|||||+|+|++|+++++++|+|||+||+|+++
T Consensus 25 ~v~-~~~~~~WcsIaYyE~n~rVGe~f~~--~~~~v~IDGf~dps~~~rfcLg~lsN~~R~~~v~~~R~~IG~GV~L~~~ 101 (227)
T 1khx_A 25 PVT-YSEPAFWCSIAYYELNQRVGETFHA--SQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYI 101 (227)
T ss_dssp CCC-CCCCSCSEEEEEEETTEECSCCEEE--CSSEEEEESSCCSSCTTEEEGGGCCCTTCCHHHHHHHTTTTTCEEEEEE
T ss_pred ccc-cCCCCceEEEEEEecCceeCCeEEe--cCCEEEEeCccCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEE
Confidence 344 4789999999999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy10708 430 GEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGP 509 (589)
Q Consensus 430 ~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~gp 509 (589)
+ |+|||+|+|+++|||||++||.++|+++ ++||||+||+++||||+++|++.|++ +++
T Consensus 102 ~-G~V~~~nlS~~~IFVqS~~~n~~~~~~~-~tV~Ki~pg~~lKvFd~~~fa~~L~~--------------~~~------ 159 (227)
T 1khx_A 102 G-GEVFAECLSDSAIFVQSPNCNQRYGWHP-ATVCKIPPGCNLKIFNNQEFAALLAQ--------------SVN------ 159 (227)
T ss_dssp T-TEEEEEECSSSCEEEECHHHHHHTTCCT-TCCEEECTTCEEEEEEHHHHHHHHHH--------------HGG------
T ss_pred C-CEEEEEEcCCCCEEEeCCCcccccCCCc-CceEEeCCCCeEEEeCHHHHHHHHHH--------------Hhc------
Confidence 6 9999999999999999999999999999 59999999999999999988655432 222
Q ss_pred CCCCCCCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHHHHHHHHccCCCC
Q psy10708 510 HSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMPID 583 (589)
Q Consensus 510 ~~~~g~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLqwLD~VL~qm~~~ 583 (589)
.++ .+||+|+|||+||||||||||++|+||+||+||||||||||+||||||+||+|||..
T Consensus 160 ---~~~-----------~~v~~L~~~C~iRISFvKGWG~~Y~Rq~It~tPCWiEI~l~~pL~~ld~vl~~m~~p 219 (227)
T 1khx_A 160 ---QGF-----------EAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSP 219 (227)
T ss_dssp ---GCH-----------HHHHGGGGGGEEEEEESCCCSSSSSCCSGGGSSSEEEEEEHHHHHHHHHHHTTSCCC
T ss_pred ---cCC-----------CchhhhhhceEEEEEEEcCCCCCCCCCCCCcCCeEEEEECCHHHHHHHHHHhhcCCC
Confidence 123 479999999999999999999999999999999999999999999999999999964
No 5
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=100.00 E-value=1.1e-49 Score=364.38 Aligned_cols=121 Identities=74% Similarity=1.201 Sum_probs=114.7
Q ss_pred CCCccccccCCCCccCCCCC------ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCce
Q psy10708 41 QNGYTSTSSSSGGTSGSPGP------GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHV 114 (589)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~------~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHv 114 (589)
+++-++...++||++|+|++ +++|||||||++++||+|++||+++|+.+|+||+|||++||||||++||++|||
T Consensus 6 ~~~~~~v~~Ll~~k~g~e~ek~~~ka~~sLvKkLK~k~~~Le~L~~Av~s~g~~~s~CV~ipr~ldgrlqv~~rk~~PHv 85 (132)
T 3qsv_A 6 DACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHV 85 (132)
T ss_dssp SCHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTSSCCCCCEEECCTTSCEEETTEEECHHH
T ss_pred cCcchhhhhhhccccCchhHHHHHHHHHHHHHHHhcccchHHHHHHHHhCCCCCCCCeEEeeccccccccccccccCcce
Confidence 44677888999999999998 899999999988899999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccccccccccccccCCCCeeeeCCccccceecCC
Q psy10708 115 IYARIWRWPDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPG 161 (589)
Q Consensus 115 iycRlwRWPDL~~~ELk~l~~C~~~~~~~~~~vC~NPYHY~Rv~~Pg 161 (589)
||||||||||||+||||++++|+|+|+.+.++||||||||+||++|+
T Consensus 86 i~cRlwRWPdL~s~ELk~l~~C~~~~~~~~~~VC~NPyHY~Rv~~p~ 132 (132)
T 3qsv_A 86 IYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPG 132 (132)
T ss_dssp HHHHHHTCTTCCTTCEEECTTCTTCGGGCCSEEECCGGGEEECCC--
T ss_pred eEEEEecCCccCHhhcccCCCCCCCccCCCCeEEeCCcCcccccCCC
Confidence 99999999999999999999999999999999999999999999985
No 6
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=100.00 E-value=3.1e-48 Score=358.92 Aligned_cols=129 Identities=44% Similarity=0.773 Sum_probs=109.2
Q ss_pred CCCCCccccccCCCCccCC---CCC------ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceeccccc
Q psy10708 39 PHQNGYTSTSSSSGGTSGS---PGP------GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRK 109 (589)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~---~~~------~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk 109 (589)
-+.++.+..-.+|||++|+ +++ +++||||||| +++||+|++||+++|. .|+||+|||+|||||||++||
T Consensus 4 ~~~~~~~~v~~ll~~~~~~~~~~~e~~~~kai~sLvKkLK~-~~~Le~L~~AV~s~g~-~t~CV~iprsldgRlqv~~rk 81 (144)
T 1ozj_A 4 ILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQNV-NTKCITIPRSLDGRLQVSHRK 81 (144)
T ss_dssp ---CCCHHHHHHHTSCCCSCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHCCT-TSCCCEEECCTTSCEEETTEE
T ss_pred cccCCcHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHhcc-cccHHHHHHHHhCCCC-CCCeEEcccCCCccccccCcc
Confidence 3566788889999999777 444 8899999999 4699999999999997 799999999999999999999
Q ss_pred CCCceEEEEeecCCCCCc-ccccccccccccccCCCCeeeeCCccccceecCCCCCCCcccccCCCccccc
Q psy10708 110 GFPHVIYARIWRWPDLHK-NELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKD 179 (589)
Q Consensus 110 ~~PHviycRlwRWPDL~~-~ELk~l~~C~~~~~~~~~~vC~NPYHY~Rv~~Pgidl~~l~l~~~pp~lv~~ 179 (589)
++||||||||||||||++ +|||++++|+|+|+.+.++||||||||+||+.|++ ||+|||.
T Consensus 82 ~~PHVi~cRlwRWPDL~~~~ELk~l~~C~~~~~~~~~~VC~NPYHY~Rv~~p~~----------pPvlvp~ 142 (144)
T 1ozj_A 82 GLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVL----------PPVLVPR 142 (144)
T ss_dssp ECHHHHHHHHHTCTTCCSGGGEEECTTCTTCGGGCCSEEECCGGGEEECCC--------------------
T ss_pred CCCeeEEEEeeeCccCCCHhhccccccCCCchhcCCCeEEeCcchhhhhccCCC----------CCccCCC
Confidence 999999999999999965 99999999999999999999999999999999998 8889874
No 7
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=100.00 E-value=5.6e-45 Score=330.90 Aligned_cols=116 Identities=45% Similarity=0.839 Sum_probs=108.0
Q ss_pred CccccccCCCCccCCCCC------ccchhhhhhhchhhHHHHHHHHhcCCCCCCceeEecccCCcceecccccCCCceEE
Q psy10708 43 GYTSTSSSSGGTSGSPGP------GYKSDNEEQEKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIY 116 (589)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~------~~sLvKkLK~~~~~Le~L~~Av~s~g~~~s~CVtipr~ldgrlqv~~rk~~PHviy 116 (589)
+.+..-.+|||++|++++ +++|||||||++++||+|++||+++| .+|+||+|||++||||||++||++|||||
T Consensus 2 ~~~~v~~ll~~~~~~~~~~~~~kav~sL~KklK~~~~~Le~L~~Av~~~~-~~s~CV~ipr~ldgrlqv~~~k~~Phvi~ 80 (124)
T 3kmp_A 2 TSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPG-QPSNCVTIPRSLDGRLQVSHRKGLPHVIY 80 (124)
T ss_dssp CCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHCTT-SCCCCCEEECCSSSCEEETTEEECHHHHH
T ss_pred CchhhhHHhhhhcCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHhCCC-CCCCeEEeccccccccccCCcccCceeeE
Confidence 345566789999999888 89999999997789999999999876 69999999999999999999999999999
Q ss_pred EEeecCCCCCc-ccccccccccccccCCCCeeeeCCccccceec
Q psy10708 117 ARIWRWPDLHK-NELKHLKYCQYAFDLKCDSVCVNPYHYERVVS 159 (589)
Q Consensus 117 cRlwRWPDL~~-~ELk~l~~C~~~~~~~~~~vC~NPYHY~Rv~~ 159 (589)
|||||||||++ +|||++++|+|+|+.+.+.||||||||+||++
T Consensus 81 crl~RWpdL~~~~eLk~l~~C~~~~~~~~~~VC~NPyHY~Rve~ 124 (124)
T 3kmp_A 81 CRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVES 124 (124)
T ss_dssp HHHHTCTTCCCGGGEEECTTCSSCGGGCCSEEECCGGGEEECCC
T ss_pred EEeecCCcCCCHHHcccCCCCCCCccCCCCeEEeCCccchhhcC
Confidence 99999999965 99999999999999999999999999999974
No 8
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A
Probab=97.11 E-value=0.0055 Score=61.44 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=103.6
Q ss_pred CCCceEEEEEEeecccccceeeecCCCCe-EEEcCC-cC--CCCCCeeeecCccC-C-CC--ChhhHHHHHcccCceEEE
Q psy10708 356 PPEYWCSVAYFELDTQVGETFKVPSSCPN-VTIDGY-VD--PSGGNRFCLGALSN-V-HR--TDQSERARLHIGKGVQLD 427 (589)
Q Consensus 356 ~p~~WCsIaYyEln~RVGe~F~v~s~~ps-V~VDGf-~D--ps~~~RFCLG~LsN-v-~R--~~~ve~tR~hIGkGV~L~ 427 (589)
+...+-.|..|=....|++. .| .++. +.|=.. .+ +...+..+|=.-.. . +. ...++++-.|+++||.|.
T Consensus 14 ~~~~~l~Vtv~YrG~~V~~~-~v--~~p~GcRl~~~~~~~~~~~~e~V~lP~p~~~l~~~~q~~~t~~LL~~l~rGllL~ 90 (242)
T 3a77_A 14 GEEWEFEVTAFYRGRQVFQQ-TI--SCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALW 90 (242)
T ss_dssp TCCBEEEEEEEETTEEEEEE-EE--ECTTCEEEC-------CCSSEEECCCCGGGTCCCHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCccEEEEEEEECCEEEEEE-EE--cCCCeEEEecCCCCCCCCCCceeECCCCccccccHHHHHHHHHHHHhcCCeEEEE
Confidence 33455677666677778876 44 2332 333111 11 01122222221111 1 11 234888889999999999
Q ss_pred EecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy10708 428 LRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATAQAAAAAQAAAVAGHIP 507 (589)
Q Consensus 428 ~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~q~aa~~q~~~v~g~~~ 507 (589)
..+ ++||++.+....||...........-+ +.=+||.-+...||||+++|.+.|.+. ..|.
T Consensus 91 ~~~-~giya~Rlcq~rVfW~~~~~~~p~~~~--~~P~kLeR~~~~klFd~~~Fl~eL~~f--------------~~g~-- 151 (242)
T 3a77_A 91 RAG-QWLWAQRLGHCHTYWAVSEELLPNSGH--GPDGEVPKDKEGGVFDLGPFIVDLITF--------------TEGS-- 151 (242)
T ss_dssp EET-TEEEEEECSSSCEEEEEECSSCCCCTT--CCSEECCSSSCEEEEEHHHHHHHHHHH--------------HTTS--
T ss_pred EcC-CcEEEEEcCCccEEEecCCCCCCCCCC--CCCcccCCCCceeecCHHHHHHHHHHH--------------HcCC--
Confidence 976 789999999999999863311111111 123799999999999999998766532 2221
Q ss_pred CCCCCCCCCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHHHHHHH
Q psy10708 508 GPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEV 576 (589)
Q Consensus 508 gp~~~~g~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLqwLD~V 576 (589)
+--|. +.|.+.|.+-|=. .+-..+.-..++|...-+=+|++.+
T Consensus 152 ------~~~P~-----------------~~I~LcFGEe~Pd---~~p~ekkLI~VqVvp~~ar~lle~a 194 (242)
T 3a77_A 152 ------GRSPR-----------------YALWFCVGESWPQ---DQPWTKRLVMVKVVPTCLRALVEMA 194 (242)
T ss_dssp ------SCCCC-----------------CEEEEEECCSSTT---SCHHHHCCEEEEEEEHHHHHHHHHH
T ss_pred ------CCCCC-----------------cEEEEEeCCcCCC---CCccccceEEEEEEHHHHHHHHHHH
Confidence 11232 4688888665542 3334466677888877777777765
No 9
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=96.60 E-value=0.0051 Score=61.82 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=80.4
Q ss_pred hhHHHHHcccCceEEEEecCCcEEEEecCCceEEeeccccCcccCCCCCCceEEcCCCCeEEEeccHHHHHHHHHHHHHH
Q psy10708 412 QSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQMQQQAATA 491 (589)
Q Consensus 412 ~ve~tR~hIGkGV~L~~~~~G~Vwl~nlS~~pVFVqS~~ln~~~g~~~~dtV~KI~pg~slKVFD~~~f~~~m~~~~~~~ 491 (589)
.++++..|+++||.|...+ ++||++.+....||...+..... ... -.||.-....||||+++|.++|++.
T Consensus 82 ~t~~LL~~lerGllL~~~~-~glyakRlcq~rVfW~gp~~~~~-~~~----P~kLeR~~~~kLFd~~~F~~eL~~f---- 151 (246)
T 3dsh_A 82 YTNQLLDVLDRGLILQLQG-QDLYAIRLCQCKVFWSGPCASAH-DSC----PNPIQREVKTKLFSLEHFLNELILF---- 151 (246)
T ss_dssp HHHHHHTTCSSCEEEEEET-TEEEEEECSSSCEEEESTTSCCS-CSS----CCBCCBTCCEEEEEHHHHHHHHHHH----
T ss_pred HHHHHHHhhcCceEEEEcC-CeEEEEecCCCCeEeeCCCCCCC-CCC----ccccccCCceeecCHHHHHHHHHHH----
Confidence 5888999999999999986 78999999999999975543222 111 3588888899999999998766532
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCchhhhhhhhcccchhhccceeeEEEeeecCCCCCCCCCccCCCeEEEEEcchhHH
Q psy10708 492 QAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQ 571 (589)
Q Consensus 492 q~aa~~q~~~v~g~~~gp~~~~g~~P~~~l~~~a~~~v~dL~r~C~IRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLq 571 (589)
..|. ++-.|. ++|-+.|..-|= + .+-..+.-.=++|...-+=+
T Consensus 152 ----------~~g~-------~~~~P~-----------------y~I~LcFGEe~p-d--~~p~ekkLI~VqV~p~~ar~ 194 (246)
T 3dsh_A 152 ----------QKGQ-------TNTPPP-----------------FEIFFCFGEEWP-D--RKPREKKLITVQVVPVAARL 194 (246)
T ss_dssp ----------HTTS-------CSSCCC-----------------CCEEEEESSCSS-C--SSCGGGCSEEEEEEEHHHHH
T ss_pred ----------hcCC-------CCCCCC-----------------cEEEEEECCcCC-C--CCcccccEEEEEEEHHHHHH
Confidence 2221 101121 368888877662 1 12233344446776666667
Q ss_pred HHHHHH
Q psy10708 572 LLDEVL 577 (589)
Q Consensus 572 wLD~VL 577 (589)
+++.+-
T Consensus 195 lle~~~ 200 (246)
T 3dsh_A 195 LLEMFS 200 (246)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777763
No 10
>2jmv_A Scytovirin; protein, sugar binding protein, antiviral protein; NMR {Scytonema varium} PDB: 2qsk_A 2qt4_A
Probab=23.86 E-value=1.4e+02 Score=25.34 Aligned_cols=37 Identities=35% Similarity=0.400 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCC
Q psy10708 24 TSAGSNPGGGGAVSPPHQNGYTSTSSSSGGTSGSPGP 60 (589)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (589)
=....||+|--.-++--+--=.-|||+.||-||..+-
T Consensus 56 WnEA~NP~GPNRC~~~~~CDG~RTCSs~G~CQGta~h 92 (95)
T 2jmv_A 56 WDEAKNPGGPNRCSNSKQCDGARTCSSSGFCQGTAGH 92 (95)
T ss_dssp CSCCCSSSSSSCCSSSSSCCSSCCSSSSSSSSSCCCB
T ss_pred hhcccCCCCCcccCccccccccceecccccccccccc
Confidence 3456789988888877776667899999999997654
Done!