RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10708
(589 letters)
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 362 bits (930), Expect = e-124
Identities = 202/224 (90%), Positives = 216/224 (96%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
PEYWCS+AYFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERA
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 61
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
RLHIGKGVQL+ +GEGDVW+ CLSDH+VFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD
Sbjct: 62 RLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 121
Query: 477 LRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC 536
LRQC+RQMQQQAATAQAAAAAQAAAVAG+IPGP SVGGIAPAISLSAAAGIGVDDLRRLC
Sbjct: 122 LRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLC 181
Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTM 580
ILR+SFVKGWGPDYPRQSIKETPCW+E+HLHRALQLLDEVLHTM
Sbjct: 182 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTM 225
Score = 93.1 bits (231), Expect = 4e-22
Identities = 44/53 (83%), Positives = 48/53 (90%)
Query: 277 YFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERAR 329
YFE+D QVGETFKVPSSCP VT+DGYVDPSGG+RFCLG LSNVHRT+ ERAR
Sbjct: 10 YFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERAR 62
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 190
Score = 278 bits (712), Expect = 1e-91
Identities = 87/225 (38%), Positives = 122/225 (54%), Gaps = 38/225 (16%)
Query: 357 PEYWCSVAYFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERA 416
P +WCS++Y+EL+ +VGETF S P++T+DG+ DPS RFCLG LSNV+R E
Sbjct: 1 PAFWCSISYYELNQRVGETFHA--SQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELT 58
Query: 417 RLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 476
R HIG+GV+L G G+V+ CLSD ++FVQS ++ G P V KI P +K+F+
Sbjct: 59 RRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWHPAT-VCKIPPGCNLKIFN 116
Query: 477 LRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLC 536
++ + Q V L R+C
Sbjct: 117 NQEFAALLAQS----------------------------------VNQGFEAVYQLTRMC 142
Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVLHTMP 581
+R+SFVKGWG +Y RQ++ TPCW+E+HL+ LQ LD+VL M
Sbjct: 143 TIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMG 187
Score = 82.5 bits (204), Expect = 7e-19
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 277 YFELDTQVGETFKVPSSCPNVTIDGYVDPSGGNRFCLGALSNVHRTDQSERARFSKESGL 336
Y+EL+ +VGETF S P++T+DG+ DPS RFCLG LSNV+R E R G+
Sbjct: 9 YYELNQRVGETFHA--SQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGV 66
Query: 337 QTSC 340
+
Sbjct: 67 RLYY 70
Score = 50.2 bits (120), Expect = 9e-08
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 216 PEYWCSVAYFELDTQVGETFKV 237
P +WCS++Y+EL+ +VGETF
Sbjct: 1 PAFWCSISYYELNQRVGETFHA 22
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 154 bits (390), Expect = 3e-45
Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 70 EKRDELDSLITAITTNGSHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHK-N 128
+K +LD L AITT +KC+TI R+LDGRLQV+ RKG PHVIY R+WRWPDLH +
Sbjct: 37 KKTGQLDELEKAITTQNV-NTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHH 95
Query: 129 ELKHLKYCQYAFDLKCDSVCVNPYHYERVVS 159
EL+ ++ C++AF++K D VCVNPYHY+RV +
Sbjct: 96 ELRAMELCEFAFNMKKDEVCVNPYHYQRVET 126
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
transactivation domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 239
Score = 32.1 bits (73), Expect = 0.13
Identities = 28/138 (20%), Positives = 41/138 (29%), Gaps = 10/138 (7%)
Query: 355 PPPEYWCSVAYFELDTQVGE-TFKVPSSCPNVTIDGYVDPSGGNRFCL----GALSNVHR 409
P E+ V F QV + T P V + G L +L++
Sbjct: 10 PGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGV 69
Query: 410 TDQSERARLHIGKGVQLDLRGEGDVWLHCLSDHSVFVQ-SYYLDREAGRAPGDAVHKIYP 468
+G G+ L G+ +W L + S L +G P V K
Sbjct: 70 MSYVRHVLSCLGGGLALWRAGQW-LWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPK--- 125
Query: 469 SAYIKVFDLRQCYRQMQQ 486
VFDL +
Sbjct: 126 DKEGGVFDLGPFIVDLIT 143
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 31.9 bits (72), Expect = 0.16
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 123 PDLHKNELKHLKYCQYAFDLKCDSVCVNPYH 153
P L + E++ + +L +VCVNPYH
Sbjct: 15 PHLSEKEIEEF--VLKSEELGIYAVCVNPYH 43
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/168 (13%), Positives = 43/168 (25%), Gaps = 12/168 (7%)
Query: 384 NVTIDGYVDPSG----GNRFCLGALSNVHRTDQSERARLHIGKGVQLDLRGEGDVWLHCL 439
N+ I G++D G A ++ H + R + E
Sbjct: 7 NLGIFGHID-HGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVD 65
Query: 440 SDHSVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCYRQM-------QQQAATAQ 492
+ + + V + + ++ A
Sbjct: 66 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG 125
Query: 493 AAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRL 540
+ + I + I +SA G GVD+L+ L I L
Sbjct: 126 TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 173
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 29.9 bits (67), Expect = 0.56
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 123 PDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVS 159
P E+ + A + +C+ P + V +
Sbjct: 13 PTATLEEVAKA--AEEALEYGFYGLCIPPSYVAWVRA 47
>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 226
Score = 30.0 bits (67), Expect = 0.70
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 123 PDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVS 159
P L +E + A +L + CVNP + V
Sbjct: 12 PYLTVDEAVAG--ARKAEELGVAAYCVNPIYAPVVRP 46
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex
aeolicus [TaxId: 63363]}
Length = 71
Score = 27.5 bits (61), Expect = 0.80
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 537 ILRLSFVKGWGPDYPRQSIKETPCWVEVHLHRALQLLDEVL 577
+++L F + + ++ + V +AL+ L E+L
Sbjct: 29 VIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREML 69
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor,
TetR) {Escherichia coli [TaxId: 562]}
Length = 138
Score = 28.8 bits (64), Expect = 0.92
Identities = 12/91 (13%), Positives = 21/91 (23%)
Query: 499 AAAVAGHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKET 558
A G P + + G + D F G + + T
Sbjct: 30 AKVHLGTRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALT 89
Query: 559 PCWVEVHLHRALQLLDEVLHTMPIDGHRALE 589
+ L + + DG +A
Sbjct: 90 DRPAAPDENLPPLLREALQIMDSDDGEQAFL 120
>d1jmxa5 b.61.4.1 (A:163-281) Quinohemoprotein amine dehydrogenase A
chain, domain 3 {Pseudomonas putida [TaxId: 303]}
Length = 119
Score = 28.3 bits (63), Expect = 1.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 485 QQQAATAQAAAAAQAAAVAGHIPGPHSVGGIAPAISLSAAAG 526
+ Q A +A A A +GH+ G + +S++ G
Sbjct: 7 EWQKARPKADALPGQWAFSGHMLA---KGDVRGVMSVTPDQG 45
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 29.2 bits (65), Expect = 1.2
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 123 PDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVS 159
P +++K L C A + + VCVNP + +
Sbjct: 46 PFATPDDIKKL--CLEARENRFHGVCVNPCYVKLARE 80
>d2g38b1 a.25.4.2 (B:2-174) PPE41 {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 173
Score = 28.7 bits (64), Expect = 1.3
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 477 LRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGP 509
L Q+ + A A +P
Sbjct: 74 LTDLCVQLSEVERQIHEIVRAYEWAHHDMVPLA 106
Score = 27.1 bits (60), Expect = 3.8
Identities = 1/27 (3%), Positives = 5/27 (18%)
Query: 481 YRQMQQQAATAQAAAAAQAAAVAGHIP 507
Y + + + +
Sbjct: 138 YDDFWDEDGEVMRDYRLRVSDALSKLT 164
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 28.0 bits (62), Expect = 2.8
Identities = 5/37 (13%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 123 PDLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVS 159
P + ++++L + A D + P + ++
Sbjct: 31 PRATEEDVRNL--VREASDYGFRCAVLTPVYTVKISG 65
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
[TaxId: 562]}
Length = 428
Score = 27.9 bits (61), Expect = 4.4
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 124 DLHKNELKHLKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLSLQSGSNRLVKDEYSA 183
++ + L+ +AF +V + E P + + + L
Sbjct: 66 EIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDK 125
Query: 184 GVTSTAPVLPTTGGMDVDGEAGSSG 208
VT T+G G
Sbjct: 126 PVTILT---ATSGDTGAAVAHAFYG 147
>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 126
Score = 26.4 bits (58), Expect = 4.7
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 504 GHIPGPHSVGGIAPAISLSAAAGIGVDDLRRLCI 537
+ + AISL+ A + ++DL
Sbjct: 68 AQLMSKADLTANINAISLAIQAKMTIEDLAYADF 101
>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA
{Shewanella oneidensis [TaxId: 70863]}
Length = 306
Score = 27.1 bits (60), Expect = 6.3
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 11/99 (11%)
Query: 419 HIGKGVQLDLRGEGDVWLHCLSDHSVFVQSYYLDREAGRAPGDAV---HKIYPSAYIKVF 475
+ +G + E D+++H D + + + E + D V + ++
Sbjct: 83 AMQEGNREAPAIEYDLFVHLRCDRYDIL--HLVANEISQMFEDLVELVEEERGFRFMDSR 140
Query: 476 DLRQCYRQMQQQAATAQAAAAAQAAAVAGHIPGPHSVGG 514
DL T + P GG
Sbjct: 141 DL------TGFVDGTENPKGRHRQEVALVGSEDPEFKGG 173
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.415
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,256,982
Number of extensions: 106860
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 24
Length of query: 589
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 499
Effective length of database: 1,171,896
Effective search space: 584776104
Effective search space used: 584776104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)