Query psy10709
Match_columns 348
No_of_seqs 258 out of 354
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 16:36:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4149|consensus 100.0 7.5E-39 1.6E-43 274.1 2.5 105 209-313 7-120 (129)
2 KOG4149|consensus 100.0 1.4E-35 3.1E-40 254.0 2.8 93 5-97 7-108 (129)
3 PF01900 RNase_P_Rpp14: Rpp14/ 99.4 1.7E-13 3.7E-18 110.6 3.6 66 135-200 35-103 (107)
4 PRK03717 ribonuclease P protei 98.9 2.7E-09 5.8E-14 90.9 6.9 65 136-200 47-112 (120)
5 KOG4639|consensus 98.6 4.5E-08 9.7E-13 87.3 4.5 68 144-214 53-120 (154)
6 COG1369 POP5 RNase P/RNase MRP 98.1 3E-06 6.4E-11 73.7 5.1 66 135-200 46-112 (124)
7 PF07802 GCK: GCK domain; Int 97.7 3.2E-05 7E-10 62.3 3.3 53 257-309 8-63 (76)
8 PF06747 CHCH: CHCH domain; I 95.9 0.0061 1.3E-07 40.9 2.3 35 263-299 1-35 (35)
9 PF07802 GCK: GCK domain; Int 95.3 0.03 6.5E-07 45.4 4.5 44 53-96 8-54 (76)
10 PF06747 CHCH: CHCH domain; I 94.6 0.02 4.3E-07 38.4 1.6 34 59-94 1-34 (35)
11 KOG4477|consensus 36.1 30 0.00064 33.2 2.6 33 269-301 37-72 (228)
12 PF12225 MTHFR_C: Methylene-te 29.7 24 0.00052 29.9 0.8 29 254-289 43-71 (97)
13 COG2428 Uncharacterized conser 23.1 53 0.0012 31.2 1.8 51 111-161 16-71 (196)
14 PF10254 Pacs-1: PACS-1 cytoso 22.3 48 0.001 34.6 1.5 43 180-222 299-346 (414)
15 PF08583 Cmc1: Cytochrome c ox 21.5 55 0.0012 24.5 1.3 43 259-302 9-51 (69)
No 1
>KOG4149|consensus
Probab=100.00 E-value=7.5e-39 Score=274.10 Aligned_cols=105 Identities=47% Similarity=0.940 Sum_probs=93.8
Q ss_pred hccCCceEEEeccccccCCCCCcCCCCC---------CCCCCCCCCCceeecCCccCCCCCCCchHHHHHhhhccccCCC
Q psy10709 209 QREGKDFIIFATKEDHAIPSSVELPPPE---------PQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTD 279 (348)
Q Consensus 209 ~~egKD~vifvTkEd~~~ps~~el~~~d---------p~~G~~~P~GeINwdCPClggMa~GPCG~~FreAFsCF~~S~~ 279 (348)
++.+||.|++++++|+..|++.+++... ..+|+++|||+|||+|||||||++||||++||+|||||+||++
T Consensus 7 ~~~skDe~~~~~k~E~~~~iK~e~~~~~~n~e~~~~~~~~g~~~PDG~INwdCpClg~m~a~pCG~eFreA~sCf~~s~~ 86 (129)
T KOG4149|consen 7 KEMSKDEILKMGKEEFEEPIKDEYVPQLENTEPNEESNEPGPTNPDGTINWDCPCLGGLVAGPCGEEFREAFSCFKYSDT 86 (129)
T ss_pred hhhcchHHHhhhHHHhhcchhHHHHHHhcccCCCcccCCCCCcCCCCceeecCccccccccCccHHHHHHHHhhccccCC
Confidence 4789999999999999999988765543 2689999999999999999999999999999999999999999
Q ss_pred CCCcCchHHHHHHHHHHHHhChhhhCCCCCCCCC
Q psy10709 280 EPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDED 313 (348)
Q Consensus 280 e~kg~dC~e~F~~mq~Cm~~~P~~Y~~~~~~~~~ 313 (348)
++||+||+++|++||+||++||..|......-.|
T Consensus 87 e~kg~dC~~qf~a~~~C~qk~p~~~~eq~~~T~d 120 (129)
T KOG4149|consen 87 EPKGGDCVKQFVAMQECMQKYPREEEEQCAKTND 120 (129)
T ss_pred CcCccchHHHHHHHHHHHHhCchHHHHHhcccCC
Confidence 9999999999999999999999777655543333
No 2
>KOG4149|consensus
Probab=100.00 E-value=1.4e-35 Score=253.99 Aligned_cols=93 Identities=44% Similarity=0.768 Sum_probs=84.8
Q ss_pred cccCCceEEEeccCCCCCCCCCCCC----C-----CCCCCCCCCCCCcccccCCccCCCCCCCchHhhhhhhcccccCCC
Q psy10709 5 QREGKDFIIFATKEDHAIPSSVELP----P-----PEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTD 75 (348)
Q Consensus 5 ~~e~KD~iif~tkE~~~~p~~~el~----~-----~~~~~g~~~p~G~inw~CpClg~m~~gpCG~~Fr~AfsCf~~s~~ 75 (348)
++.+||.|++++++++.+|++.++. + ++.++|+++|||+|||+|||||||++||||++||+|||||+||++
T Consensus 7 ~~~skDe~~~~~k~E~~~~iK~e~~~~~~n~e~~~~~~~~g~~~PDG~INwdCpClg~m~a~pCG~eFreA~sCf~~s~~ 86 (129)
T KOG4149|consen 7 KEMSKDEILKMGKEEFEEPIKDEYVPQLENTEPNEESNEPGPTNPDGTINWDCPCLGGLVAGPCGEEFREAFSCFKYSDT 86 (129)
T ss_pred hhhcchHHHhhhHHHhhcchhHHHHHHhcccCCCcccCCCCCcCCCCceeecCccccccccCccHHHHHHHHhhccccCC
Confidence 5679999999999999999999852 1 124799999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHhhh
Q psy10709 76 EPKGDLRSTKSRATTILMCDGV 97 (348)
Q Consensus 76 e~kg~~c~~~f~~~~~~m~~~~ 97 (348)
|+||++|++||+||.+||++.-
T Consensus 87 e~kg~dC~~qf~a~~~C~qk~p 108 (129)
T KOG4149|consen 87 EPKGGDCVKQFVAMQECMQKYP 108 (129)
T ss_pred CcCccchHHHHHHHHHHHHhCc
Confidence 9999999999999999988544
No 3
>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P. This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.
Probab=99.39 E-value=1.7e-13 Score=110.56 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=57.0
Q ss_pred ccccccccc---ceeEeeccccceEEEEecCcchhHHHHhhhhcccccCcceEEEEEeecchhhhhccc
Q psy10709 135 MYYTGAGVP---IDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLNLLSR 200 (348)
Q Consensus 135 ~~~VGaal~---vDVLkfs~at~raILRVps~~~vkLWSALTLig~yq~~pC~FrV~qVSptLL~L~~~ 200 (348)
.+++|++.. ++|++|++.|.++||||+++.+++||+|||+++++++.||.|+|++|||||++....
T Consensus 35 ~G~~G~~~~~~~l~v~~~~~~t~~~IiR~~r~~~~~v~~aL~~i~~i~~~~~~~~vl~vSGTir~~~k~ 103 (107)
T PF01900_consen 35 FGDFGAAAISPSLQVKYFNPKTGIGIIRCRREYYKKVWSALTLITSINGRPCSIRVLHVSGTIRSCQKF 103 (107)
T ss_dssp CHHHHHHHH--EEE--EEETTTTEEEEEEEGGGHHHHHHHHHT--EETTEEEEEEEEEEESSHHHHHHH
T ss_pred cChhhhhhcccccceeeEcCCCCEEEEEEcchhhhHHHHHHHHHhccCCceEEEEEEEEChhHHHHHHH
Confidence 477787655 899999999999999999999999999999999999999999999999999987653
No 4
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=98.92 E-value=2.7e-09 Score=90.95 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=57.9
Q ss_pred cccccc-ccceeEeeccccceEEEEecCcchhHHHHhhhhcccccCcceEEEEEeecchhhhhccc
Q psy10709 136 YYTGAG-VPIDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLNLLSR 200 (348)
Q Consensus 136 ~~VGaa-l~vDVLkfs~at~raILRVps~~~vkLWSALTLig~yq~~pC~FrV~qVSptLL~L~~~ 200 (348)
+.+|++ ...-|++|++.|.++||||.++.++.+|+||+++.++.+.||.|+|+.||+|+++....
T Consensus 47 Gd~G~~~~~~~li~f~~~t~~gIlRc~R~~~~~v~aAL~li~~i~~~~v~ir~l~vSGTIk~~~~k 112 (120)
T PRK03717 47 GELGTARAKPWFIKFDEKTQTGIVRCDRKHVEELRFALTLVTEINGSKAIIRTLGVSGTIKRLKRK 112 (120)
T ss_pred ChhhhccccceEEEEeCCCCEEEEEcCchhHHHHHHHHHHHHhCCCeeEEEEEeeccHHHHHHHHH
Confidence 566664 33567899999999999999999999999999999999999999999999999987653
No 5
>KOG4639|consensus
Probab=98.59 E-value=4.5e-08 Score=87.35 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=60.9
Q ss_pred ceeEeeccccceEEEEecCcchhHHHHhhhhcccccCcceEEEEEeecchhhhhcccccccchhhhccCCc
Q psy10709 144 IDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLNLLSRLTLTMSTCQREGKD 214 (348)
Q Consensus 144 vDVLkfs~at~raILRVps~~~vkLWSALTLig~yq~~pC~FrV~qVSptLL~L~~~l~~~ms~~~~egKD 214 (348)
+.|.||++.|+.+||||.+.+++.+|+||.+++...++||.|+++.||++++.-..- +|.|-|++--+
T Consensus 53 l~VkYl~~~T~v~ilRc~~~~~k~v~~aLplI~~i~d~~~~~~tl~Vggtik~cekf---iik~nr~el~~ 120 (154)
T KOG4639|consen 53 LSVKYLNENTSVAILRCAREGCKLVWAALPLITKIGDVPCIFRTLFVGGTIKKCEKF---IIKYNRSELHR 120 (154)
T ss_pred eEEEEeCCCCcEEEEEEccccchhHHHHHhHHHhhcCcceEEEEEEEhhhHHHHHHH---HHHHhHHHHHH
Confidence 589999999999999999999999999999999999999999999999999998774 66666555433
No 6
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3e-06 Score=73.73 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=58.9
Q ss_pred ccccccccc-ceeEeeccccceEEEEecCcchhHHHHhhhhcccccCcceEEEEEeecchhhhhccc
Q psy10709 135 MYYTGAGVP-IDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLNLLSR 200 (348)
Q Consensus 135 ~~~VGaal~-vDVLkfs~at~raILRVps~~~vkLWSALTLig~yq~~pC~FrV~qVSptLL~L~~~ 200 (348)
++.+|.+.- .-|++|+..|.++||||.+..+..+|+||+|+.++.+.+-.+.|+.||+|+.+....
T Consensus 46 lG~~gta~~~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~~~~~g~rv~I~~lgvSGTIKka~~~ 112 (124)
T COG1369 46 LGDVGTAKANPRLVKYYFSTGTGIVRCRREYVDLVRAALMLAREVNGKRVIIVVLGVSGTIKKAKRK 112 (124)
T ss_pred cCcccccccceeEEEEeccCCceEEEEechhHHHHHHHHHHHHHhCCceEEEEEeeccccHHHHHHH
Confidence 355565544 788999999999999999999999999999999999999999999999999988764
No 7
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=97.69 E-value=3.2e-05 Score=62.28 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=44.2
Q ss_pred CCCCCCchHHHHHhhhccccC---CCCCCcCchHHHHHHHHHHHHhChhhhCCCCC
Q psy10709 257 GMATGPCGVQFREAFSCFHYS---TDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDD 309 (348)
Q Consensus 257 gMa~GPCG~~FreAFsCF~~S---~~e~kg~dC~e~F~~mq~Cm~~~P~~Y~~~~~ 309 (348)
=|..|||++.|.+-..|.-.. .+......|.+.|.+|..||..|||+|...+.
T Consensus 8 FMkgG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kCM~ahsdYY~P~La 63 (76)
T PF07802_consen 8 FMKGGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKCMEAHSDYYEPILA 63 (76)
T ss_pred HhcCCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 489999999999999999433 22245679999999999999999999986653
No 8
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=95.90 E-value=0.0061 Score=40.92 Aligned_cols=35 Identities=17% Similarity=0.560 Sum_probs=31.3
Q ss_pred chHHHHHhhhccccCCCCCCcCchHHHHHHHHHHHHh
Q psy10709 263 CGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQ 299 (348)
Q Consensus 263 CG~~FreAFsCF~~S~~e~kg~dC~e~F~~mq~Cm~~ 299 (348)
|+.+|+..+.|+..+..+ .+.|.+.+.++++|+++
T Consensus 1 C~~e~~~~~~Cl~~n~~~--~~~C~~~~~~~~~C~~~ 35 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFD--WSKCRKEFKAYKECRMK 35 (35)
T ss_dssp THHHHHHHHHHHHCH-SS--TCCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCc--HHhhHHHHHHHHHHhhC
Confidence 899999999999998875 89999999999999863
No 9
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=95.26 E-value=0.03 Score=45.36 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=35.9
Q ss_pred CCCCCCchHhhhhhhccccc---CCCCCCcchhhHHHHHHHHHHHhh
Q psy10709 53 GMATGPCGVQFREAFSCFHY---STDEPKGDLRSTKSRATTILMCDG 96 (348)
Q Consensus 53 ~m~~gpCG~~Fr~AfsCf~~---s~~e~kg~~c~~~f~~~~~~m~~~ 96 (348)
=|..|||++.|..-..|.-- +.++-...+|.+.|.+|..||-.|
T Consensus 8 FMkgG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kCM~ah 54 (76)
T PF07802_consen 8 FMKGGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKCMEAH 54 (76)
T ss_pred HhcCCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhc
Confidence 48999999999999999942 333345579999999999999754
No 10
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=94.63 E-value=0.02 Score=38.41 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=31.0
Q ss_pred chHhhhhhhcccccCCCCCCcchhhHHHHHHHHHHH
Q psy10709 59 CGVQFREAFSCFHYSTDEPKGDLRSTKSRATTILMC 94 (348)
Q Consensus 59 CG~~Fr~AfsCf~~s~~e~kg~~c~~~f~~~~~~m~ 94 (348)
|+.+|+..+.|+..+..+ .+.|.+.+.++.+|+.
T Consensus 1 C~~e~~~~~~Cl~~n~~~--~~~C~~~~~~~~~C~~ 34 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFD--WSKCRKEFKAYKECRM 34 (35)
T ss_dssp THHHHHHHHHHHHCH-SS--TCCCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCc--HHhhHHHHHHHHHHhh
Confidence 899999999999999886 8999999999999985
No 11
>KOG4477|consensus
Probab=36.13 E-value=30 Score=33.17 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=24.7
Q ss_pred HhhhccccCCC---CCCcCchHHHHHHHHHHHHhCh
Q psy10709 269 EAFSCFHYSTD---EPKGVNCFEAFKTMQDCMAQYP 301 (348)
Q Consensus 269 eAFsCF~~S~~---e~kg~dC~e~F~~mq~Cm~~~P 301 (348)
+||-||+-..- -.+...|..+.++||-=.+-.+
T Consensus 37 eAfkC~vCdvRKGTSTRkpr~nsqlVaqQvtqq~~~ 72 (228)
T KOG4477|consen 37 EAFKCFVCDVRKGTSTRKPRCNSQLVAQQVTQQTMV 72 (228)
T ss_pred hhhheeeecccccccccCCcchHHHHHHHHhhhhcC
Confidence 67999976432 2577899999999997666544
No 12
>PF12225 MTHFR_C: Methylene-tetrahydrofolate reductase C terminal; InterPro: IPR022026 This family is found in bacteria and archaea, and is approximately 100 amino acids in length. There is a conserved NGPCGG sequence motif. This family is the C-terminal of methylene-tetrahydrofolate reductase. This protein reduces FAD using the reducing equivalents from reduced FAD, subsequently reduces tetrahydrofolate. The C-terminal of MTHFR contains the FAD binding site and is the catalytic portion of the enzyme.
Probab=29.72 E-value=24 Score=29.94 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=21.4
Q ss_pred ccCCCCCCCchHHHHHhhhccccCCCCCCcCchHHH
Q psy10709 254 CLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEA 289 (348)
Q Consensus 254 ClggMa~GPCG~~FreAFsCF~~S~~e~kg~dC~e~ 289 (348)
|..+|.+||||-. ++- .|=++.+ .+|+=.
T Consensus 43 CpK~l~NGPCGG~-~~G-~CEV~~~-----~~C~w~ 71 (97)
T PF12225_consen 43 CPKSLLNGPCGGS-QDG-KCEVDPD-----RPCAWV 71 (97)
T ss_pred CcCccccCCCCCC-CCC-ceecCCC-----CcccHH
Confidence 8999999999988 443 6766543 677643
No 13
>COG2428 Uncharacterized conserved protein [Function unknown]
Probab=23.12 E-value=53 Score=31.16 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHHHhhhhhhh--hhhhhccCC--Cccccccc-ccccceeEeeccccceEEEEec
Q psy10709 111 IYRKSIQTTNQH--MTVIHNFKP--PVPMYYTG-AGVPIDLLKFNPAQTRAILRCP 161 (348)
Q Consensus 111 ~~~~~~~~~~q~--~~~i~~~~~--~v~~~~VG-aal~vDVLkfs~at~raILRVp 161 (348)
+-.|-.|.-.|+ +|++-|..| +--+--+| +++|.++.++.....++|+==+
T Consensus 16 lllEy~e~a~~~G~~~~vtna~pe~p~vlak~g~~~i~e~~~~~~l~r~rvivLDl 71 (196)
T COG2428 16 LLLEYKEVARWWGDEFIVTNAKPEEPEVLAKIGLSGIPESITRLPLDRSRVIVLDL 71 (196)
T ss_pred HHHHHHHHHHHhchheeeecCCcchhHHHHHhccccCchhHhhcccCCCCEEEecC
Confidence 444444555666 999999999 44455677 8899999999888888887544
No 14
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=22.29 E-value=48 Score=34.57 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=33.4
Q ss_pred CcceEEEEEeecchhhhh---cccccccchhhhccCCce--EEEeccc
Q psy10709 180 NHPARFITHRTSPCLLNL---LSRLTLTMSTCQREGKDF--IIFATKE 222 (348)
Q Consensus 180 ~~pC~FrV~qVSptLL~L---~~~l~~~ms~~~~egKD~--vifvTkE 222 (348)
...|+||.++||-....= ...-+++|.|..||.|++ |+|+.|.
T Consensus 299 TlK~~FrslqVsRlP~~g~~~~~~~~msmt~vtkeKkkK~~vm~l~KK 346 (414)
T PF10254_consen 299 TLKSTFRSLQVSRLPSSGEEATATPTMSMTVVTKEKKKKVPVMFLGKK 346 (414)
T ss_pred CchhceeeeeeecCCCCCCCCCCCCceEEEehhhhcCCccceeccCcc
Confidence 357999999999655432 222368999999999999 9999876
No 15
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=21.49 E-value=55 Score=24.45 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=32.0
Q ss_pred CCCCchHHHHHhhhccccCCCCCCcCchHHHHHHHHHHHHhChh
Q psy10709 259 ATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPT 302 (348)
Q Consensus 259 a~GPCG~~FreAFsCF~~S~~e~kg~dC~e~F~~mq~Cm~~~P~ 302 (348)
+.-.|.....+...|...+.- ---..|.++..+|..||.+|-.
T Consensus 9 ~~~~C~~~i~~~~~C~~~~~~-~~~~~C~~~~~~m~~Cl~~~~~ 51 (69)
T PF08583_consen 9 AHKKCADEIEAFAECHKDRTF-KFVGKCREEKKAMNECLKEERN 51 (69)
T ss_pred HHHHhHHHHHHHHHHHhcchH-HHHHhhhHHHHHHHHHHHHHHh
Confidence 344688888888889876322 1236799999999999998843
Done!