Query psy10709
Match_columns 348
No_of_seqs 258 out of 354
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 16:37:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k3j_A Mitochondrial intermemb 100.0 7.9E-51 2.7E-55 353.4 2.3 114 202-315 2-120 (146)
2 2k3j_A Mitochondrial intermemb 100.0 8.3E-45 2.8E-49 315.7 1.7 105 1-109 5-114 (146)
3 2zxt_A Maltose-binding peripla 100.0 1.1E-30 3.6E-35 250.2 5.5 80 235-314 379-458 (465)
4 2zxt_A Maltose-binding peripla 99.9 4.4E-26 1.5E-30 218.3 2.9 73 32-108 380-452 (465)
5 2czv_C Ribonuclease P protein 99.5 1.5E-14 5.1E-19 120.4 4.3 65 136-200 47-112 (120)
6 2av5_A Ribonuclease P protein 99.5 2.8E-14 9.5E-19 118.6 4.5 65 136-200 47-112 (120)
7 3i1m_G 30S ribosomal protein S 27.8 30 0.001 30.9 2.4 63 78-142 18-84 (179)
8 3gty_S TF, 30S ribosomal prote 24.7 41 0.0014 28.9 2.7 63 78-142 11-77 (149)
9 3u5c_F RP14, S2, YS8, 40S ribo 23.7 35 0.0012 31.6 2.1 58 82-141 89-152 (225)
10 1fiz_L Beta-acrosin light chai 21.9 15 0.00052 23.8 -0.5 10 260-269 7-16 (26)
11 3r8n_G 30S ribosomal protein S 21.8 31 0.001 29.9 1.3 63 78-142 17-83 (151)
No 1
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=100.00 E-value=7.9e-51 Score=353.44 Aligned_cols=114 Identities=63% Similarity=1.245 Sum_probs=64.9
Q ss_pred cccchhhhccCCceEEEeccccccCCCCCcCCCCCC-----CCCCCCCCCceeecCCccCCCCCCCchHHHHHhhhcccc
Q psy10709 202 TLTMSTCQREGKDFIIFATKEDHAIPSSVELPPPEP-----QPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHY 276 (348)
Q Consensus 202 ~~~ms~~~~egKD~vifvTkEd~~~ps~~el~~~dp-----~~G~~~P~GeINwdCPClggMa~GPCG~~FreAFsCF~~ 276 (348)
.|+|||||++|||+|||+|||||++|++++|++++| ++|+++|||+|||+|||||||++||||++||+||+||+|
T Consensus 2 ~~~msy~r~~gKD~Vif~TkEe~~~ps~~el~~~d~~~~~~~~g~~~p~GeINwdCPClggma~GPCG~eFreAfsCF~~ 81 (146)
T 2k3j_A 2 SFTMSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHY 81 (146)
T ss_dssp -------------------------------------------CCBCTTSSBCTTSHHHHHHTSSSTHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcCceEEEeCHHHhcCcccccccCCCCCcccccCCccCCCCceeecCCcccccCCCCcHHHHHHHHHhhcc
Confidence 379999999999999999999999999999988775 579999999999999999999999999999999999999
Q ss_pred CCCCCCcCchHHHHHHHHHHHHhChhhhCCCCCCCCCCC
Q psy10709 277 STDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLD 315 (348)
Q Consensus 277 S~~e~kg~dC~e~F~~mq~Cm~~~P~~Y~~~~~~~~~~~ 315 (348)
|++++||+||+++|++||+||++||++|++++++++...
T Consensus 82 S~~e~Kg~dC~e~F~~mq~Cm~~~P~~y~~~~~~~~~~~ 120 (146)
T 2k3j_A 82 STEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEER 120 (146)
T ss_dssp HCCSSTTTTTHHHHHHHHHHHHHCSSCC-----------
T ss_pred CccccccchHHHHHHHHHHHHHHChHhhccccccccccc
Confidence 999999999999999999999999999999777655543
No 2
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=100.00 E-value=8.3e-45 Score=315.72 Aligned_cols=105 Identities=57% Similarity=0.991 Sum_probs=62.1
Q ss_pred CccccccCCceEEEeccCCCCCCCCCCCCCCCC-----CCCCCCCCCcccccCCccCCCCCCCchHhhhhhhcccccCCC
Q psy10709 1 MSTCQREGKDFIIFATKEDHAIPSSVELPPPEP-----QPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTD 75 (348)
Q Consensus 1 m~~~~~e~KD~iif~tkE~~~~p~~~el~~~~~-----~~g~~~p~G~inw~CpClg~m~~gpCG~~Fr~AfsCf~~s~~ 75 (348)
|||||++|||+|||+|||||++|++++|+++++ ++|+++|||+|||+|||||||++||||++||+||+||+||++
T Consensus 5 msy~r~~gKD~Vif~TkEe~~~ps~~el~~~d~~~~~~~~g~~~p~GeINwdCPClggma~GPCG~eFreAfsCF~~S~~ 84 (146)
T 2k3j_A 5 MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTE 84 (146)
T ss_dssp ----------------------------------------CCBCTTSSBCTTSHHHHHHTSSSTHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhcCceEEEeCHHHhcCcccccccCCCCCcccccCCccCCCCceeecCCcccccCCCCcHHHHHHHHHhhccCcc
Confidence 899999999999999999999999999976554 579999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHhhhcccchhhhhhhH
Q psy10709 76 EPKGDLRSTKSRATTILMCDGVLKSNETFKDWLS 109 (348)
Q Consensus 76 e~kg~~c~~~f~~~~~~m~~~~~~~~e~~~d~~~ 109 (348)
++||+||+++|++|+.||++ ||+.|.+++.
T Consensus 85 e~Kg~dC~e~F~~mq~Cm~~----~P~~y~~~~~ 114 (146)
T 2k3j_A 85 EIKGSDCVDQFRAMQECMQK----YPDLYPQEDE 114 (146)
T ss_dssp SSTTTTTHHHHHHHHHHHHH----CSSCC-----
T ss_pred ccccchHHHHHHHHHHHHHH----ChHhhccccc
Confidence 99999999999999988864 6777766543
No 3
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.96 E-value=1.1e-30 Score=250.21 Aligned_cols=80 Identities=50% Similarity=1.091 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCCceeecCCccCCCCCCCchHHHHHhhhccccCCCCCCcCchHHHHHHHHHHHHhChhhhCCCCCCCCCC
Q psy10709 235 PEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDL 314 (348)
Q Consensus 235 ~dp~~G~~~P~GeINwdCPClggMa~GPCG~~FreAFsCF~~S~~e~kg~dC~e~F~~mq~Cm~~~P~~Y~~~~~~~~~~ 314 (348)
..++.|+++|||+|||+|||+++|++||||++||+||+||++|++++||+||+++|++||+||++||++|++++.+++|+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 458 (465)
T 2zxt_A 379 GRPEFAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDD 458 (465)
T ss_dssp TTGGGGEETTTTEECTTCGGGTTTTSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCTTTCCCCCC-----
T ss_pred cccccCCCCCCCeeeecCCccccCCCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCHHHHHHhhhhhhhc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999988766554
No 4
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.91 E-value=4.4e-26 Score=218.30 Aligned_cols=73 Identities=45% Similarity=0.833 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCcccccCCccCCCCCCCchHhhhhhhcccccCCCCCCcchhhHHHHHHHHHHHhhhcccchhhhhhh
Q psy10709 32 EPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGDLRSTKSRATTILMCDGVLKSNETFKDWL 108 (348)
Q Consensus 32 ~~~~g~~~p~G~inw~CpClg~m~~gpCG~~Fr~AfsCf~~s~~e~kg~~c~~~f~~~~~~m~~~~~~~~e~~~d~~ 108 (348)
.++.|+++|||+|||+|||+++|++||||++||+|||||++|++|+||++|+++|++||.||+ +||++|.+.|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~----~~~~~~~~~~ 452 (465)
T 2zxt_A 380 RPEFAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFR----KYPEHYAEQL 452 (465)
T ss_dssp TGGGGEETTTTEECTTCGGGTTTTSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHT----TCTTTCCCCC
T ss_pred ccccCCCCCCCeeeecCCccccCCCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHH----HCHHHHHHhh
Confidence 357799999999999999999999999999999999999999999999999999999998886 5677777763
No 5
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=99.48 E-value=1.5e-14 Score=120.38 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=60.4
Q ss_pred ccccccc-cceeEeeccccceEEEEecCcchhHHHHhhhhcccccCcceEEEEEeecchhhhhccc
Q psy10709 136 YYTGAGV-PIDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLNLLSR 200 (348)
Q Consensus 136 ~~VGaal-~vDVLkfs~at~raILRVps~~~vkLWSALTLig~yq~~pC~FrV~qVSptLL~L~~~ 200 (348)
+++|++. .++|+||+++|.++||||++++++.+|+||||++++++.||+|+|++||+|+++....
T Consensus 47 Gd~G~~~~~~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k 112 (120)
T 2czv_C 47 GETGTAIVKPWLIKFDPNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRK 112 (120)
T ss_dssp HHHHHHHHCCEEEEEETTTTEEEEEEEGGGHHHHHHHHHTCCEETTEECEEEEEEEESSHHHHHHH
T ss_pred CcchhhccCceEEEEcCCCCEEEEEeCchhHHHHHHHHHhHhhCCCEEEEEEEeEEChhHHHHHHH
Confidence 5666665 7899999999999999999999999999999999999999999999999999998854
No 6
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1
Probab=99.46 E-value=2.8e-14 Score=118.56 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=60.0
Q ss_pred ccccccc-cceeEeeccccceEEEEecCcchhHHHHhhhhcccccCcceEEEEEeecchhhhhccc
Q psy10709 136 YYTGAGV-PIDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLNLLSR 200 (348)
Q Consensus 136 ~~VGaal-~vDVLkfs~at~raILRVps~~~vkLWSALTLig~yq~~pC~FrV~qVSptLL~L~~~ 200 (348)
+++|++. .++|+||++.|+++||||++++++.+|+||||++++++.||+|+|++||+|+++....
T Consensus 47 Gd~G~~~~~~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k 112 (120)
T 2av5_A 47 GELGTAKAKPWLIKFDETTQTGIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRK 112 (120)
T ss_dssp HHHHHHHHCCEEEEEETTTTEEEEEEEGGGHHHHHHHHHTCCEETTEEEEEEEEEEESSHHHHHHH
T ss_pred CcccccccCccEEEEcCCCCEEEEEeCchhHHHHHHHHHHHhhCCCEEEEEEEeEEchhHHHHHHH
Confidence 5666665 5899999999999999999999999999999999999999999999999999998854
No 7
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=27.80 E-value=30 Score=30.90 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=42.5
Q ss_pred CcchhhHHHHHHHHHHHhhhcccchh-hhhhhHHHHHHHhhhhhhh-hhhhhccCCCcc--cccccccc
Q psy10709 78 KGDLRSTKSRATTILMCDGVLKSNET-FKDWLSNIYRKSIQTTNQH-MTVIHNFKPPVP--MYYTGAGV 142 (348)
Q Consensus 78 kg~~c~~~f~~~~~~m~~~~~~~~e~-~~d~~~~~~~~~~~~~~q~-~~~i~~~~~~v~--~~~VGaal 142 (348)
.++.=+++|..+ .|.++=+.--+. ..+-+..|.++.-++-.|. ..+|+|+.|.|+ -.-+||++
T Consensus 18 y~~~lV~kliN~--lM~~GKKs~A~~Iv~~A~~~I~~kt~~nPl~vl~~AI~Nv~P~veVks~rvGG~t 84 (179)
T 3i1m_G 18 FGSELLAKFVNI--LMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGST 84 (179)
T ss_dssp TCCHHHHHHHHH--HCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCCSSSC
T ss_pred cCCHHHHHHHHH--HHhccCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEEEeeCCEE
Confidence 355567777655 376543222222 5666677777777777776 899999999998 56677764
No 8
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=24.66 E-value=41 Score=28.93 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=41.9
Q ss_pred CcchhhHHHHHHHHHHHhhhcccchh-hhhhhHHHHHHHhhhhhhh-hhhhhccCCCcc--cccccccc
Q psy10709 78 KGDLRSTKSRATTILMCDGVLKSNET-FKDWLSNIYRKSIQTTNQH-MTVIHNFKPPVP--MYYTGAGV 142 (348)
Q Consensus 78 kg~~c~~~f~~~~~~m~~~~~~~~e~-~~d~~~~~~~~~~~~~~q~-~~~i~~~~~~v~--~~~VGaal 142 (348)
.++.=+++|..+- |.++=+.--+. ..+-+..|.++.-++-.|. ..+|+|+.|.|+ ..-+||++
T Consensus 11 ~~~~lv~kliN~l--M~~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~ 77 (149)
T 3gty_S 11 FGDVLVAKLINRV--MWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGAT 77 (149)
T ss_dssp SCCHHHHHHHHHH--CBTTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSC
T ss_pred cCCHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCeEEEEEeeCCEE
Confidence 4566677876653 76543332333 5556666766666666666 899999999998 56677764
No 9
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=23.66 E-value=35 Score=31.62 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhhh---cccc--hhhhhhhHHHHHHHhhhhhhh-hhhhhccCCCccccccccc
Q psy10709 82 RSTKSRATTILMCDGV---LKSN--ETFKDWLSNIYRKSIQTTNQH-MTVIHNFKPPVPMYYTGAG 141 (348)
Q Consensus 82 c~~~f~~~~~~m~~~~---~~~~--e~~~d~~~~~~~~~~~~~~q~-~~~i~~~~~~v~~~~VGaa 141 (348)
=+++|..+ .|.+.. +|.- ....+-+..|.++.-++-.|. ..+|+|+.|.++..-||++
T Consensus 89 iv~rliN~--LM~~~~~~GKKs~A~~Ivy~AfeiI~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~g 152 (225)
T 3u5c_F 89 IIERLTNS--LMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGG 152 (225)
T ss_dssp HHHHHHHH--HSCSGGGSSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHTTSCSEEEECCCSS
T ss_pred HHHHHHHH--HHhcCccCCcHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHhCCCCeeEEEeccC
Confidence 35777655 376522 2221 114555666666666666666 8999999999998888754
No 10
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=21.87 E-value=15 Score=23.84 Aligned_cols=10 Identities=60% Similarity=1.630 Sum_probs=8.7
Q ss_pred CCCchHHHHH
Q psy10709 260 TGPCGVQFRE 269 (348)
Q Consensus 260 ~GPCG~~Fre 269 (348)
+||||--||.
T Consensus 7 dgpCGlrfrq 16 (26)
T 1fiz_L 7 DGPCGLRFRQ 16 (26)
T ss_pred cccccceecc
Confidence 6899999986
No 11
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=21.84 E-value=31 Score=29.86 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=39.6
Q ss_pred CcchhhHHHHHHHHHHHhhhcccchh-hhhhhHHHHHHHhhhhhhh-hhhhhccCCCcc--cccccccc
Q psy10709 78 KGDLRSTKSRATTILMCDGVLKSNET-FKDWLSNIYRKSIQTTNQH-MTVIHNFKPPVP--MYYTGAGV 142 (348)
Q Consensus 78 kg~~c~~~f~~~~~~m~~~~~~~~e~-~~d~~~~~~~~~~~~~~q~-~~~i~~~~~~v~--~~~VGaal 142 (348)
.++.=+++|..+ .|.++=+.--+. ..+-+..|.++.-++-.|. ..+|+|+.|.|+ -.-+||++
T Consensus 17 ~~~~lv~kliN~--lM~~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~t 83 (151)
T 3r8n_G 17 FGSELLAKFVNI--LMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGST 83 (151)
T ss_dssp TCCHHHHHHHHH--HCCTTCHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHCCSEEECCCCCSSCC
T ss_pred cCCHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeEEEEEeeCCEE
Confidence 355567777655 376543222222 4555555666555555666 899999999998 56677764
Done!