RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10709
         (348 letters)



>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 118

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 11/75 (14%)

Query: 137 YTGAGVPIDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLN 196
              A V   L+KF+P     I+R    +   L+ +L     +N       T   S     
Sbjct: 47  TGTAIVKPWLIKFDPNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSG---- 102

Query: 197 LLSRLTLTMSTCQRE 211
                  T+   +R+
Sbjct: 103 -------TIKRLKRK 110


>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 106

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 11/75 (14%)

Query: 137 YTGAGVPIDLLKFNPAQTRAILRCPASFFIKLQTSLTTCGYYNNHPARFITHRTSPCLLN 196
              A     L+KF+      I+R   +    +  SLT     N + A       S     
Sbjct: 35  LGTAKAKPWLIKFDETTQTGIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSG---- 90

Query: 197 LLSRLTLTMSTCQRE 211
                  T+   +R+
Sbjct: 91  -------TIKRLKRK 98


>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
           {Escherichia coli [TaxId: 562]}
          Length = 61

 Score = 27.3 bits (61), Expect = 0.48
 Identities = 5/15 (33%), Positives = 11/15 (73%)

Query: 324 RKEAQEKADRIIEQA 338
           + EA+++  +I+ QA
Sbjct: 30  KAEAEQERTKIVAQA 44



 Score = 27.3 bits (61), Expect = 0.53
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 325 KEAQEKADRIIEQA 338
           K+A+ +A  IIEQA
Sbjct: 5   KKAKAEAQVIIEQA 18


>d1f06a2 d.81.1.3 (A:119-268) Diaminopimelic acid dehydrogenase
           (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 150

 Score = 27.5 bits (61), Expect = 1.5
 Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 7/54 (12%)

Query: 288 EAFKTMQDCMAQYPTLYKQNDDDDEDLDDDVKDVS-----IRKEAQEKADRIIE 336
              +TM D    Y         D+   D +   +      I        +  +E
Sbjct: 93  NDIRTMPDYFVGYEVEVNFI--DEATFDSEHTGMPHGGHVITTGDTGGFNHTVE 144


>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase
           {Yeast (Candida tropicalis) [TaxId: 5482]}
          Length = 175

 Score = 27.0 bits (58), Expect = 2.2
 Identities = 6/72 (8%), Positives = 17/72 (23%), Gaps = 2/72 (2%)

Query: 230 VELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEA 289
            E+      P  ++     +   P       G    +     +    +T+          
Sbjct: 24  FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPA--KTTGFGTTEPAAPCGNEGL 81

Query: 290 FKTMQDCMAQYP 301
           F+ ++       
Sbjct: 82  FEVIKVGSNVSS 93



 Score = 26.3 bits (56), Expect = 4.3
 Identities = 4/38 (10%), Positives = 9/38 (23%)

Query: 26 VELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQF 63
           E+      P  ++     +   P       G    + 
Sbjct: 24 FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61


>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase
           {Escherichia coli [TaxId: 562]}
          Length = 147

 Score = 26.5 bits (57), Expect = 3.2
 Identities = 8/72 (11%), Positives = 17/72 (23%)

Query: 230 VELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEA 289
           VE  P +P    I  +            + +G        +      +    K  +  + 
Sbjct: 18  VEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKH 77

Query: 290 FKTMQDCMAQYP 301
            K     +    
Sbjct: 78  IKAGDRVVYAQS 89


>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 147

 Score = 25.5 bits (55), Expect = 7.8
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 312 EDLDDDVKDVSIRKEAQEKADRIIEQADSGSSH 344
            DLD +  ++ ++    EK   + +QA     H
Sbjct: 8   HDLDSNSFELDLQFSEDEKRLLLEKQAGGNPWH 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,355,235
Number of extensions: 64452
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 12
Length of query: 348
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,226,816
Effective search space: 321425792
Effective search space used: 321425792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)