Query psy10710
Match_columns 161
No_of_seqs 156 out of 1605
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 16:39:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00109 KU BPTI/Kunitz family 99.6 7.9E-16 1.7E-20 95.6 5.5 54 52-105 1-54 (54)
2 smart00131 KU BPTI/Kunitz fami 99.6 8.9E-16 1.9E-20 95.0 5.6 53 52-104 1-53 (53)
3 PF00014 Kunitz_BPTI: Kunitz/B 99.6 2.7E-15 5.9E-20 92.5 6.0 53 103-155 1-53 (53)
4 PF00014 Kunitz_BPTI: Kunitz/B 99.6 2.1E-15 4.6E-20 92.9 5.6 53 53-105 1-53 (53)
5 cd00109 KU BPTI/Kunitz family 99.6 3.7E-15 8E-20 92.5 5.2 53 103-155 2-54 (54)
6 smart00131 KU BPTI/Kunitz fami 99.6 4.1E-15 8.8E-20 92.0 5.3 52 103-154 2-53 (53)
7 KOG4295|consensus 99.3 1.6E-12 3.5E-17 105.4 5.6 56 103-158 78-136 (295)
8 KOG4295|consensus 99.2 3.4E-11 7.4E-16 97.6 5.8 60 49-108 74-136 (295)
9 KOG4597|consensus 98.5 6.3E-08 1.4E-12 82.7 3.1 101 50-157 311-423 (560)
10 KOG4597|consensus 95.7 0.0057 1.2E-07 53.0 1.8 58 50-113 372-430 (560)
11 KOG3540|consensus 93.2 0.037 8E-07 48.2 1.0 57 102-158 108-164 (615)
12 KOG3540|consensus 92.4 0.048 1E-06 47.5 0.6 57 50-106 106-162 (615)
13 PF13956 Ibs_toxin: Toxin Ibs, 50.7 12 0.00025 17.8 1.2 18 1-18 1-18 (19)
14 PF00024 PAN_1: PAN domain Thi 49.2 12 0.00026 23.3 1.6 35 95-135 23-57 (79)
15 cd01099 PAN_AP_HGF Subfamily o 31.6 54 0.0012 21.1 2.6 34 95-133 25-58 (80)
16 cd01100 APPLE_Factor_XI_like S 23.8 1.3E+02 0.0028 18.8 3.3 32 95-133 25-56 (73)
17 PF06291 Lambda_Bor: Bor prote 22.2 41 0.00088 23.2 0.7 23 1-23 1-23 (97)
No 1
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=99.62 E-value=7.9e-16 Score=95.59 Aligned_cols=54 Identities=46% Similarity=1.182 Sum_probs=51.4
Q ss_pred CCCcCCCCCcCCCCceeeEEEeCCCCCeeeeecCCcCCCCCCCCChhhhhhhcC
Q psy10710 52 DVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVCL 105 (161)
Q Consensus 52 ~~C~~~~~~g~C~~~~~rw~yn~~~~~C~~f~~~gC~gn~N~F~s~~eC~~~C~ 105 (161)
++|.+|++.|.|...+++||||+.+++|+.|.|+||+++.|+|.|+++|++.|.
T Consensus 1 ~~C~~~~~~g~C~~~~~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C~ 54 (54)
T cd00109 1 DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54 (54)
T ss_pred CcccCCCCCCCCCCCccEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhcc
Confidence 479999999999999999999999999999999999999999999999999884
No 2
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=99.62 E-value=8.9e-16 Score=95.01 Aligned_cols=53 Identities=53% Similarity=1.292 Sum_probs=50.7
Q ss_pred CCCcCCCCCcCCCCceeeEEEeCCCCCeeeeecCCcCCCCCCCCChhhhhhhc
Q psy10710 52 DVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVC 104 (161)
Q Consensus 52 ~~C~~~~~~g~C~~~~~rw~yn~~~~~C~~f~~~gC~gn~N~F~s~~eC~~~C 104 (161)
.+|.+|++.|.|.+...|||||+.+++|+.|.|+||.++.|+|.|+++|++.|
T Consensus 1 ~~C~~~~~~g~c~~~~~~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 1 DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred CcccCCCCCCCCCCCeeEEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 47999999999999999999999999999999999999999999999999877
No 3
>PF00014 Kunitz_BPTI: Kunitz/Bovine pancreatic trypsin inhibitor domain; InterPro: IPR002223 The majority of the sequences having this domain belong to the MEROPS inhibitor family I2, clan IB; the Kunitz/bovine pancreatic trypsin inhibitor family, they inhibit proteases of the S1 family [] and are restricted to the metazoa with a single exception: Amsacta moorei entomopoxvirus. They are short (~50 residue) alpha/beta proteins with few secondary structures. The fold is constrained by 3 disulphide bonds. The type example for this family is aprotinin (bovine pancreatic trypsin inhibitor) [] (or basic protease inhibitor), but the family includes numerous other members [, , , ], such as snake venom basic protease; mammalian inter-alpha-trypsin inhibitors; trypstatin, a rodent mast cell inhibitor of trypsin; a domain found in an alternatively-spliced form of Alzheimer's amyloid beta-protein; domains at the C-termini of the alpha(1) and alpha(3) chains of type VII and type VI collagens; and tissue factor pathway inhibitor precursor.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1YC0_I 4DTG_K 1TFX_D 1ADZ_A 1BF0_A 3OFW_A 1SHP_A 3M7Q_B 3GYM_J 1BHC_G ....
Probab=99.59 E-value=2.7e-15 Score=92.46 Aligned_cols=53 Identities=58% Similarity=1.302 Sum_probs=50.8
Q ss_pred hcCCCCCCCCcccceeeeEEeCCCCceeeEEecCcCCCCCCCCChHHHHhhcC
Q psy10710 103 VCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCK 155 (161)
Q Consensus 103 ~C~~p~~~g~C~~~~~ryyyn~~~~~C~~f~~~GC~gn~N~F~t~~~C~~~C~ 155 (161)
+|.+|++.|.|.....+||||+++++|++|.+.||+++.|+|.|+++|+++|+
T Consensus 1 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~~c~~~~N~F~t~~~C~~~C~ 53 (53)
T PF00014_consen 1 VCLLPPDEGPCSGNEPRWYYNPSTGRCEQFWYGGCGGNENNFPTEEECQKTCG 53 (53)
T ss_dssp GGGSTCTCTSSSSCEEEEEEETTTTEEEEEEECSSSSSSSCBSSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCCccEEEEeCCCCcEEEeEccccCCCCcCCCCHHHHHHHcC
Confidence 58899999999999999999999999999999999999999999999999995
No 4
>PF00014 Kunitz_BPTI: Kunitz/Bovine pancreatic trypsin inhibitor domain; InterPro: IPR002223 The majority of the sequences having this domain belong to the MEROPS inhibitor family I2, clan IB; the Kunitz/bovine pancreatic trypsin inhibitor family, they inhibit proteases of the S1 family [] and are restricted to the metazoa with a single exception: Amsacta moorei entomopoxvirus. They are short (~50 residue) alpha/beta proteins with few secondary structures. The fold is constrained by 3 disulphide bonds. The type example for this family is aprotinin (bovine pancreatic trypsin inhibitor) [] (or basic protease inhibitor), but the family includes numerous other members [, , , ], such as snake venom basic protease; mammalian inter-alpha-trypsin inhibitors; trypstatin, a rodent mast cell inhibitor of trypsin; a domain found in an alternatively-spliced form of Alzheimer's amyloid beta-protein; domains at the C-termini of the alpha(1) and alpha(3) chains of type VII and type VI collagens; and tissue factor pathway inhibitor precursor.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1YC0_I 4DTG_K 1TFX_D 1ADZ_A 1BF0_A 3OFW_A 1SHP_A 3M7Q_B 3GYM_J 1BHC_G ....
Probab=99.59 E-value=2.1e-15 Score=92.92 Aligned_cols=53 Identities=57% Similarity=1.253 Sum_probs=50.6
Q ss_pred CCcCCCCCcCCCCceeeEEEeCCCCCeeeeecCCcCCCCCCCCChhhhhhhcC
Q psy10710 53 VCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVCL 105 (161)
Q Consensus 53 ~C~~~~~~g~C~~~~~rw~yn~~~~~C~~f~~~gC~gn~N~F~s~~eC~~~C~ 105 (161)
+|.+|++.|.|.....+||||+.+++|+.|.+.||+++.|+|.|+++|++.|.
T Consensus 1 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~~c~~~~N~F~t~~~C~~~C~ 53 (53)
T PF00014_consen 1 VCLLPPDEGPCSGNEPRWYYNPSTGRCEQFWYGGCGGNENNFPTEEECQKTCG 53 (53)
T ss_dssp GGGSTCTCTSSSSCEEEEEEETTTTEEEEEEECSSSSSSSCBSSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCCccEEEEeCCCCcEEEeEccccCCCCcCCCCHHHHHHHcC
Confidence 58999999999999999999999999999999999999999999999999884
No 5
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=99.57 E-value=3.7e-15 Score=92.54 Aligned_cols=53 Identities=49% Similarity=1.237 Sum_probs=50.7
Q ss_pred hcCCCCCCCCcccceeeeEEeCCCCceeeEEecCcCCCCCCCCChHHHHhhcC
Q psy10710 103 VCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCK 155 (161)
Q Consensus 103 ~C~~p~~~g~C~~~~~ryyyn~~~~~C~~f~~~GC~gn~N~F~t~~~C~~~C~ 155 (161)
.|.+|++.|.|....+|||||+.+++|+.|.|.||+++.|+|.|+++|+++|.
T Consensus 2 ~C~~~~~~g~C~~~~~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C~ 54 (54)
T cd00109 2 VCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54 (54)
T ss_pred cccCCCCCCCCCCCccEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhcc
Confidence 58899999999999999999999999999999999999999999999999995
No 6
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=99.57 E-value=4.1e-15 Score=92.02 Aligned_cols=52 Identities=56% Similarity=1.329 Sum_probs=50.1
Q ss_pred hcCCCCCCCCcccceeeeEEeCCCCceeeEEecCcCCCCCCCCChHHHHhhc
Q psy10710 103 VCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTC 154 (161)
Q Consensus 103 ~C~~p~~~g~C~~~~~ryyyn~~~~~C~~f~~~GC~gn~N~F~t~~~C~~~C 154 (161)
.|.+|++.|.|.....|||||+.+++|++|.|.||.++.|+|.|+++|+++|
T Consensus 2 ~C~~~~~~g~c~~~~~~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 2 VCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred cccCCCCCCCCCCCeeEEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 5889999999999999999999999999999999999999999999999988
No 7
>KOG4295|consensus
Probab=99.33 E-value=1.6e-12 Score=105.36 Aligned_cols=56 Identities=45% Similarity=0.985 Sum_probs=51.5
Q ss_pred hcCCCCCCCCcc---cceeeeEEeCCCCceeeEEecCcCCCCCCCCChHHHHhhcCCCc
Q psy10710 103 VCLLPPEPGLCR---GYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCKGTY 158 (161)
Q Consensus 103 ~C~~p~~~g~C~---~~~~ryyyn~~~~~C~~f~~~GC~gn~N~F~t~~~C~~~C~~~~ 158 (161)
.|.++.+.|.|. ....|||||+++++|.+|.|.||+||.|+|.|.++|...|+...
T Consensus 78 ~C~~~~~~g~~~~~~~~~~r~~~d~~t~~C~~F~y~GC~gN~N~F~s~~~C~~~C~~~~ 136 (295)
T KOG4295|consen 78 ICDQPKDVGLCCCCGTGSPRYYFDPKTKTCQPFIYGGCGGNSNNFLSSEECERACGSAD 136 (295)
T ss_pred ccCCchhhcccccCCCceeeeEEcCCCCeEeeeeecCcCCCcCcccCHHHHHHHhcCCC
Confidence 577778888777 78999999999999999999999999999999999999999874
No 8
>KOG4295|consensus
Probab=99.18 E-value=3.4e-11 Score=97.57 Aligned_cols=60 Identities=40% Similarity=0.869 Sum_probs=55.8
Q ss_pred CCCCCCcCCCCCcCCC---CceeeEEEeCCCCCeeeeecCCcCCCCCCCCChhhhhhhcCCCC
Q psy10710 49 SVLDVCLLPPEPGLCR---GYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVCLLPP 108 (161)
Q Consensus 49 ~~~~~C~~~~~~g~C~---~~~~rw~yn~~~~~C~~f~~~gC~gn~N~F~s~~eC~~~C~~p~ 108 (161)
....+|.++.+.|.|. ..+.|||||+.+.+|..|.|+||+||.|+|.++++|...|....
T Consensus 74 ~~~~~C~~~~~~g~~~~~~~~~~r~~~d~~t~~C~~F~y~GC~gN~N~F~s~~~C~~~C~~~~ 136 (295)
T KOG4295|consen 74 TKNEICDQPKDVGLCCCCGTGSPRYYFDPKTKTCQPFIYGGCGGNSNNFLSSEECERACGSAD 136 (295)
T ss_pred CCCcccCCchhhcccccCCCceeeeEEcCCCCeEeeeeecCcCCCcCcccCHHHHHHHhcCCC
Confidence 5678999999999887 79999999999999999999999999999999999999997543
No 9
>KOG4597|consensus
Probab=98.51 E-value=6.3e-08 Score=82.74 Aligned_cols=101 Identities=27% Similarity=0.568 Sum_probs=83.8
Q ss_pred CCCCCcCCCCCcCCCCc----eeeEEEeCCCCCeeeeecCCcCCCCCCCCChhhhhhhc-C-------CCCCCCCcccce
Q psy10710 50 VLDVCLLPPEPGLCRGY----FQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVC-L-------LPPEPGLCRGYF 117 (161)
Q Consensus 50 ~~~~C~~~~~~g~C~~~----~~rw~yn~~~~~C~~f~~~gC~gn~N~F~s~~eC~~~C-~-------~p~~~g~C~~~~ 117 (161)
.++.|+. ++.|+|..+ ...|.||..-+.|+.|....|.++.+.|.+.|.|+..| . .|-..|+| ...
T Consensus 311 ~~~e~~~-cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~pad~~pc~~GPC-~~e 388 (560)
T KOG4597|consen 311 KPAECLT-CDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRPADTRPCAQGPC-PCE 388 (560)
T ss_pred CchhhcC-CCCcccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCCccccccccCCC-CCc
Confidence 3455665 788999854 35678999999999999999999999999999999888 3 23345667 677
Q ss_pred eeeEEeCCCCceeeEEecCcCCCCCCCCChHHHHhhcCCC
Q psy10710 118 QKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCKGT 157 (161)
Q Consensus 118 ~ryyyn~~~~~C~~f~~~GC~gn~N~F~t~~~C~~~C~~~ 157 (161)
+||+|++-+ +|. ++|+++.|+|.....|.+.|.-.
T Consensus 389 ~rW~~s~ws-qCs----~eCg~g~~~r~vica~~~a~~f~ 423 (560)
T KOG4597|consen 389 PRWAYSPWS-QCS----GECGGGGNNREVICACEQACPFE 423 (560)
T ss_pred cceeecchh-hhc----cccCCCCcceeEEEeeecCCCcc
Confidence 999999988 996 89999999999999988887644
No 10
>KOG4597|consensus
Probab=95.68 E-value=0.0057 Score=53.01 Aligned_cols=58 Identities=26% Similarity=0.571 Sum_probs=49.1
Q ss_pred CCCCCcCCCCCcCCCCceeeEEEeCCCCCeeeeecCCcCCCCCCCCChhhhhhhcCCCC-CCCCc
Q psy10710 50 VLDVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVCLLPP-EPGLC 113 (161)
Q Consensus 50 ~~~~C~~~~~~g~C~~~~~rw~yn~~~~~C~~f~~~gC~gn~N~F~s~~eC~~~C~~p~-~~g~C 113 (161)
..+.|.+|-..|+| .-..||+|++.+ +|. ++|++|.|+|.+...|...|-.+. +++.|
T Consensus 372 ~~pad~~pc~~GPC-~~e~rW~~s~ws-qCs----~eCg~g~~~r~vica~~~a~~f~v~~p~~c 430 (560)
T KOG4597|consen 372 PRPADTRPCAQGPC-PCEPRWAYSPWS-QCS----GECGGGGNNREVICACEQACPFEVVDPSCC 430 (560)
T ss_pred CCCccccccccCCC-CCccceeecchh-hhc----cccCCCCcceeEEEeeecCCCcccCCcccc
Confidence 56677888888999 677899999999 998 699999999999999999988777 44444
No 11
>KOG3540|consensus
Probab=93.16 E-value=0.037 Score=48.18 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=52.9
Q ss_pred hhcCCCCCCCCcccceeeeEEeCCCCceeeEEecCcCCCCCCCCChHHHHhhcCCCc
Q psy10710 102 HVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCKGTY 158 (161)
Q Consensus 102 ~~C~~p~~~g~C~~~~~ryyyn~~~~~C~~f~~~GC~gn~N~F~t~~~C~~~C~~~~ 158 (161)
+.|..+..++.|.....+|-|+..-..|+-|...+|.++.|+|.+.++|+.+|+...
T Consensus 108 k~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~etC~tk~ 164 (615)
T KOG3540|consen 108 KFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAMETCSTKG 164 (615)
T ss_pred cccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHHHHhccCC
Confidence 467788899999999999999999999999999999999999999999999998763
No 12
>KOG3540|consensus
Probab=92.41 E-value=0.048 Score=47.52 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=51.1
Q ss_pred CCCCCcCCCCCcCCCCceeeEEEeCCCCCeeeeecCCcCCCCCCCCChhhhhhhcCC
Q psy10710 50 VLDVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVCLL 106 (161)
Q Consensus 50 ~~~~C~~~~~~g~C~~~~~rw~yn~~~~~C~~f~~~gC~gn~N~F~s~~eC~~~C~~ 106 (161)
.-..|..+..++.|.....+|-|+..-.+|.-|..++|.++.|+|....+|++.|.-
T Consensus 106 pck~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~etC~t 162 (615)
T KOG3540|consen 106 PCKFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAMETCST 162 (615)
T ss_pred cccccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHHHHhcc
Confidence 344556667899999999999999999999999999999999999999999999974
No 13
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=50.75 E-value=12 Score=17.84 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.1
Q ss_pred CCcchhhHhhhhhCCCCC
Q psy10710 1 MFGNVAYFCNASLLPYPS 18 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (161)
|.+.++++..+++.+.|.
T Consensus 1 MMk~vIIlvvLLliSf~a 18 (19)
T PF13956_consen 1 MMKLVIILVVLLLISFPA 18 (19)
T ss_pred CceehHHHHHHHhccccC
Confidence 777888877777776653
No 14
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=49.21 E-value=12 Score=23.32 Aligned_cols=35 Identities=31% Similarity=0.729 Sum_probs=26.3
Q ss_pred CChhhhhhhcCCCCCCCCcccceeeeEEeCCCCceeeEEec
Q psy10710 95 DSEEDCIHVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYG 135 (161)
Q Consensus 95 ~s~~eC~~~C~~p~~~g~C~~~~~ryyyn~~~~~C~~f~~~ 135 (161)
.+.++|...|...+. .|.. |.|+..+++|..+...
T Consensus 23 ~s~~~C~~~C~~~~~--~C~s----~~y~~~~~~C~L~~~~ 57 (79)
T PF00024_consen 23 PSLEECAQLCLNEPR--RCKS----FNYDPSSKTCYLSSSD 57 (79)
T ss_dssp SSHHHHHHHHHHSTT---ESE----EEEETTTTEEEEECSS
T ss_pred CCHHHHHhhcCcCcc--cCCe----EEEECCCCEEEEcCCC
Confidence 579999999987554 4654 6699999999986543
No 15
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=31.57 E-value=54 Score=21.15 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=25.2
Q ss_pred CChhhhhhhcCCCCCCCCcccceeeeEEeCCCCceeeEE
Q psy10710 95 DSEEDCIHVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFI 133 (161)
Q Consensus 95 ~s~~eC~~~C~~p~~~g~C~~~~~ryyyn~~~~~C~~f~ 133 (161)
.|.++|...|... ....|+. +-|+..++.|....
T Consensus 25 ~s~~~C~~~C~~~-~~f~CrS----f~y~~~~~~C~L~~ 58 (80)
T cd01099 25 ASLEECLRKCLEE-TEFTCRS----FNYNYKSKECILSD 58 (80)
T ss_pred CCHHHHHHHhCCC-CCceEeE----EEEEcCCCEEEEeC
Confidence 6899999999875 3345655 44777799998744
No 16
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=23.82 E-value=1.3e+02 Score=18.78 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=23.4
Q ss_pred CChhhhhhhcCCCCCCCCcccceeeeEEeCCCCceeeEE
Q psy10710 95 DSEEDCIHVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFI 133 (161)
Q Consensus 95 ~s~~eC~~~C~~p~~~g~C~~~~~ryyyn~~~~~C~~f~ 133 (161)
.+.++|...|...+ .| ..|.|+...+.|....
T Consensus 25 ~s~~~Cq~~C~~~~---~C----~afT~~~~~~~C~lk~ 56 (73)
T cd01100 25 SSAEQCQAACTADP---GC----LAFTYNTKSKKCFLKS 56 (73)
T ss_pred CCHHHHHHHcCCCC---Cc----eEEEEECCCCeEEccc
Confidence 47999999997633 33 4467888888897744
No 17
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=22.20 E-value=41 Score=23.19 Aligned_cols=23 Identities=22% Similarity=-0.067 Sum_probs=20.1
Q ss_pred CCcchhhHhhhhhCCCCCCCccc
Q psy10710 1 MFGNVAYFCNASLLPYPSGQRIE 23 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~ 23 (161)
|+|.++...++++|..|..+.+.
T Consensus 1 mKk~ll~~~lallLtgCatqt~~ 23 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQTFT 23 (97)
T ss_pred CcHHHHHHHHHHHHcccceeEEE
Confidence 89999999999999999987775
Done!