RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10710
(161 letters)
>gnl|CDD|238057 cd00109, KU, BPTI/Kunitz family of serine protease inhibitors;
Structure is a disulfide rich alpha+beta fold. BPTI
(bovine pancreatic trypsin inhibitor) is an extensively
studied model structure.
Length = 54
Score = 81.9 bits (203), Expect = 1e-21
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 102 HVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCK 155
VC LPP+ G C+ Y ++Y++ +T QC F YGGC GN N F ++E+C RTC
Sbjct: 1 DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54
Score = 81.1 bits (201), Expect = 2e-21
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 52 DVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVCL 105
DVC LPP+ G C+ Y ++Y++ +T QC F YGGC GN N F ++E+C C
Sbjct: 1 DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54
>gnl|CDD|200929 pfam00014, Kunitz_BPTI, Kunitz/Bovine pancreatic trypsin inhibitor
domain. Indicative of a protease inhibitor, usually a
serine protease inhibitor. Structure is a disulfide rich
alpha+beta fold. BPTI (bovine pancreatic trypsin
inhibitor) is an extensively studied model structure.
Certain family members are similar to the tick
anticoagulant peptide (TAP). This is a highly selective
inhibitor of factor Xa in the blood coagulation
pathways. TAP molecules are highly dipolar, and are
arranged to form a twisted two- stranded antiparallel
beta-sheet followed by an alpha helix.
Length = 53
Score = 81.2 bits (201), Expect = 2e-21
Identities = 32/53 (60%), Positives = 40/53 (75%)
Query: 103 VCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCK 155
CLLPP+PG CRG ++Y+NPSTGQC FIYGGC GN N F+S E+C + C+
Sbjct: 1 FCLLPPDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKACR 53
Score = 79.7 bits (197), Expect = 1e-20
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 53 VCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVCL 105
CLLPP+PG CRG ++Y+NPSTGQC FIYGGC GN N F+S E+C C
Sbjct: 1 FCLLPPDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKACR 53
>gnl|CDD|197529 smart00131, KU, BPTI/Kunitz family of serine protease inhibitors.
Serine protease inhibitors. One member of the family is
encoded by an alternatively-spliced form of Alzheimer's
amyloid beta-protein.
Length = 53
Score = 80.8 bits (200), Expect = 4e-21
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 102 HVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTC 154
VCLLPP+ G C G ++Y++P TG C F YGGC GN N F+S E+C RTC
Sbjct: 1 DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53
Score = 79.6 bits (197), Expect = 8e-21
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 52 DVCLLPPEPGLCRGYFQKFYFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIHVC 104
DVCLLPP+ G C G ++Y++P TG C F YGGC GN N F+S E+C C
Sbjct: 1 DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase.
Length = 484
Score = 28.5 bits (63), Expect = 1.6
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 113 CRGYFQKFYF-NPSTGQCVQFIYGGCNGNGNRFDSEEDCIRTCKGTYV 159
C G FQ FY NP+ I GG N N D +D TY+
Sbjct: 420 CNGGFQSFYTQNPNPNILTGAIVGGPNQNDGYPDQRDDYSHAEPATYI 467
>gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional.
Length = 394
Score = 28.5 bits (63), Expect = 1.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 89 GNGNRFDSEEDCIHVCLLPPEPGLCRGYFQ 118
G G+ D + +HVCL P +PGLCR F+
Sbjct: 306 GGGDGTDMNVEQLHVCL-PAKPGLCRLLFR 334
>gnl|CDD|203549 pfam06945, DUF1289, Protein of unknown function (DUF1289). This
family consists of a number of hypothetical bacterial
proteins. The aligned region spans around 56 residues
and contains 4 highly conserved cysteine residues
towards the N-terminus. The function of this family is
unknown. Structural modelling suggests this domain may
bind nucleic acids.
Length = 51
Score = 25.3 bits (56), Expect = 3.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 100 CIHVCLLPPEPGLCRG 115
CI VC L PE G+C G
Sbjct: 4 CIGVCSLDPEDGICVG 19
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11
nitrilases). CPA (EC 3.5.1.53, also known as
N-carbamoylputrescine amidase and carbamoylputrescine
hydrolase) converts N-carbamoylputrescine to putrescine,
a step in polyamine biosynthesis in plants and bacteria.
This subgroup includes Arabidopsis thaliana CPA, also
known as nitrilase-like 1 (NLP1), and Pseudomonas
aeruginosa AguB. This subgroup belongs to a larger
nitrilase superfamily comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13),
this subgroup corresponds to class 11. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer; P.
aeruginosa AugB is a homohexamer, Arabidopsis thaliana
NLP1 is a homooctomer.
Length = 284
Score = 26.8 bits (60), Expect = 6.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 65 GYFQKFYFNP 74
GY++KFYF P
Sbjct: 122 GYYEKFYFTP 131
Score = 26.8 bits (60), Expect = 6.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 115 GYFQKFYFNP 124
GY++KFYF P
Sbjct: 122 GYYEKFYFTP 131
>gnl|CDD|235356 PRK05170, PRK05170, hypothetical protein; Provisional.
Length = 147
Score = 26.0 bits (58), Expect = 7.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 121 YFNPSTGQCVQFIYGGCNGNGNRFDSEEDCIR 152
+ T QC Y NRF+ DC++
Sbjct: 52 LLDIKTCQCS--DYE------NRFEFVPDCVK 75
>gnl|CDD|183423 PRK12306, uvrC, excinuclease ABC subunit C; Reviewed.
Length = 519
Score = 26.6 bits (59), Expect = 8.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 66 YFQKFYFNPSTGQCVQFIYG 85
YFQK +P T V+ I
Sbjct: 39 YFQKKDHDPKTQSLVKAIRD 58
Score = 26.6 bits (59), Expect = 8.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 116 YFQKFYFNPSTGQCVQFIYG 135
YFQK +P T V+ I
Sbjct: 39 YFQKKDHDPKTQSLVKAIRD 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.146 0.501
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,221,444
Number of extensions: 714905
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 23
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (24.9 bits)