Query psy10711
Match_columns 203
No_of_seqs 189 out of 1133
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 16:40:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 5.6E-35 1.2E-39 239.8 10.6 166 20-195 263-452 (823)
2 cd02660 Peptidase_C19D A subfa 100.0 1E-34 2.3E-39 233.8 9.7 160 23-195 1-161 (328)
3 cd02658 Peptidase_C19B A subfa 100.0 1.6E-34 3.4E-39 231.2 10.6 150 24-195 1-164 (311)
4 KOG1865|consensus 100.0 1.4E-34 3E-39 235.6 6.0 163 16-193 102-264 (545)
5 cd02657 Peptidase_C19A A subfa 100.0 1.3E-33 2.7E-38 225.4 11.3 150 24-195 1-157 (305)
6 cd02671 Peptidase_C19O A subfa 100.0 1.6E-33 3.4E-38 226.2 11.1 143 17-195 19-161 (332)
7 cd02663 Peptidase_C19G A subfa 100.0 1.1E-33 2.3E-38 225.2 8.2 137 24-194 1-146 (300)
8 cd02669 Peptidase_C19M A subfa 100.0 1E-32 2.3E-37 229.3 14.3 158 17-195 114-289 (440)
9 cd02668 Peptidase_C19L A subfa 100.0 4.9E-33 1.1E-37 223.6 10.7 149 24-194 1-155 (324)
10 cd02661 Peptidase_C19E A subfa 100.0 3.9E-33 8.4E-38 222.2 9.8 160 22-194 1-161 (304)
11 cd02666 Peptidase_C19J A subfa 100.0 2.7E-32 5.9E-37 219.0 10.0 154 22-193 1-177 (343)
12 cd02659 peptidase_C19C A subfa 100.0 8.5E-31 1.8E-35 211.5 12.1 150 21-194 1-150 (334)
13 cd02664 Peptidase_C19H A subfa 100.0 9.6E-31 2.1E-35 210.4 11.4 133 24-192 1-134 (327)
14 cd02667 Peptidase_C19K A subfa 100.0 6E-31 1.3E-35 207.4 6.7 114 24-202 1-116 (279)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 8.8E-31 1.9E-35 199.5 6.0 174 20-203 69-270 (415)
16 KOG0944|consensus 99.9 4.2E-28 9.2E-33 200.6 7.3 154 17-193 302-465 (763)
17 PF00443 UCH: Ubiquitin carbox 99.9 9.3E-27 2E-31 181.4 10.0 149 22-180 1-154 (269)
18 cd02662 Peptidase_C19F A subfa 99.9 2.6E-27 5.7E-32 182.8 6.4 97 24-202 1-101 (240)
19 KOG1868|consensus 99.9 1.5E-26 3.3E-31 195.9 8.0 176 18-203 297-503 (653)
20 KOG1873|consensus 99.9 1.1E-25 2.3E-30 188.2 7.5 157 16-194 199-369 (877)
21 COG5207 UBP14 Isopeptidase T [ 99.9 3.4E-24 7.4E-29 173.0 6.7 155 19-195 299-458 (749)
22 KOG1863|consensus 99.9 6.3E-24 1.4E-28 191.8 6.6 154 17-195 164-318 (1093)
23 COG5077 Ubiquitin carboxyl-ter 99.9 2.4E-24 5.3E-29 180.5 0.4 151 17-195 188-338 (1089)
24 KOG1867|consensus 99.9 1.2E-22 2.6E-27 169.0 6.2 165 19-195 158-324 (492)
25 KOG1866|consensus 99.9 1.1E-22 2.4E-27 170.1 4.8 173 6-200 78-253 (944)
26 KOG1870|consensus 99.9 2E-21 4.4E-26 171.8 10.7 175 16-200 240-435 (842)
27 cd02673 Peptidase_C19Q A subfa 99.9 3.9E-22 8.5E-27 153.8 4.5 87 109-195 22-108 (245)
28 cd02674 Peptidase_C19R A subfa 99.8 8.7E-22 1.9E-26 151.0 3.6 58 119-195 21-78 (230)
29 PF13423 UCH_1: Ubiquitin carb 99.8 4.5E-20 9.7E-25 146.7 8.4 155 23-194 1-159 (295)
30 cd02665 Peptidase_C19I A subfa 99.8 3.6E-20 7.9E-25 140.6 3.2 73 119-195 21-93 (228)
31 cd02257 Peptidase_C19 Peptidas 99.7 9.5E-19 2.1E-23 134.6 3.6 75 119-195 21-95 (255)
32 KOG2026|consensus 99.7 7.5E-17 1.6E-21 126.7 9.6 152 19-195 131-289 (442)
33 KOG1871|consensus 99.7 3.8E-17 8.3E-22 128.7 5.6 164 19-195 25-263 (420)
34 cd02672 Peptidase_C19P A subfa 99.5 8.2E-15 1.8E-19 114.6 -0.1 101 19-195 12-112 (268)
35 KOG1872|consensus 99.4 1.8E-14 3.9E-19 116.4 1.4 157 19-194 102-267 (473)
36 KOG4598|consensus 99.4 1.4E-14 3E-19 121.7 -0.2 125 19-195 84-208 (1203)
37 KOG1864|consensus 99.1 3.1E-11 6.8E-16 102.8 4.2 163 20-194 230-418 (587)
38 KOG1275|consensus 98.8 4.3E-09 9.4E-14 91.3 3.3 158 20-195 497-675 (1118)
39 KOG1864|consensus 98.5 2.3E-07 5E-12 79.5 6.0 121 13-140 23-154 (587)
40 cd02670 Peptidase_C19N A subfa 98.3 3E-07 6.4E-12 70.8 1.9 64 119-203 22-86 (241)
41 PF05408 Peptidase_C28: Foot-a 96.1 0.0027 5.8E-08 46.1 1.1 23 21-43 32-54 (193)
42 PF15499 Peptidase_C98: Ubiqui 92.1 1.1 2.5E-05 34.7 7.6 28 26-53 6-33 (275)
43 PF08715 Viral_protease: Papai 91.0 0.48 1E-05 38.2 4.8 79 20-136 100-179 (320)
44 KOG1871|consensus 88.2 0.36 7.8E-06 39.5 2.2 121 19-139 175-315 (420)
45 KOG3556|consensus 75.7 3.7 7.9E-05 35.2 3.5 26 19-44 365-390 (724)
46 KOG1867|consensus 68.2 3.5 7.6E-05 35.5 1.9 42 12-53 67-108 (492)
47 PF12653 DUF3785: Protein of u 42.2 24 0.00052 24.3 2.1 21 164-184 116-136 (138)
48 COG1779 C4-type Zn-finger prot 37.9 28 0.00061 26.0 2.2 19 160-178 35-53 (201)
49 KOG1873|consensus 35.3 16 0.00034 33.0 0.6 43 152-195 361-403 (877)
50 PF14855 PapJ: Pilus-assembly 32.5 17 0.00038 26.2 0.3 13 28-40 13-25 (187)
51 KOG1868|consensus 29.8 18 0.00039 32.3 0.1 15 25-39 205-219 (653)
52 PRK14892 putative transcriptio 29.7 53 0.0012 21.7 2.3 37 154-190 19-64 (99)
53 COG2051 RPS27A Ribosomal prote 29.0 45 0.00097 20.2 1.6 16 167-182 18-33 (67)
54 PF12295 Symplekin_C: Sympleki 28.5 80 0.0017 23.3 3.3 25 31-55 110-134 (183)
55 PF10264 Stork_head: Winged he 27.2 1.5E+02 0.0032 18.8 3.8 55 68-137 10-64 (80)
56 PF09723 Zn-ribbon_8: Zinc rib 27.1 1.1E+02 0.0024 16.4 3.1 20 167-186 4-23 (42)
57 KOG2757|consensus 24.8 2.8E+02 0.0061 23.2 5.9 61 21-87 139-199 (411)
58 PRK00415 rps27e 30S ribosomal 24.5 64 0.0014 19.1 1.7 17 167-183 10-26 (59)
59 KOG1290|consensus 24.5 2.7E+02 0.0057 24.5 5.9 19 118-136 518-536 (590)
60 PF13878 zf-C2H2_3: zinc-finge 24.3 29 0.00063 18.7 0.2 14 167-180 12-25 (41)
61 PHA00689 hypothetical protein 23.8 44 0.00095 18.8 0.9 17 167-183 16-32 (62)
62 PF13248 zf-ribbon_3: zinc-rib 23.3 33 0.00071 16.3 0.3 9 169-177 3-11 (26)
63 PF08199 E2: Bacteriophage E2- 21.4 29 0.00063 17.7 -0.1 16 22-37 17-32 (37)
64 PF13717 zinc_ribbon_4: zinc-r 21.2 66 0.0014 16.7 1.2 10 168-177 25-34 (36)
65 PF13499 EF-hand_7: EF-hand do 20.8 1.1E+02 0.0024 17.6 2.4 49 74-135 2-50 (66)
66 cd04380 RhoGAP_OCRL1 RhoGAP_OC 20.6 2.3E+02 0.0051 21.4 4.6 23 30-52 10-32 (220)
67 COG4481 Uncharacterized protei 20.4 65 0.0014 18.7 1.1 13 165-177 31-43 (60)
68 PF09855 DUF2082: Nucleic-acid 20.0 76 0.0017 19.1 1.5 22 156-177 22-45 (64)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-35 Score=239.77 Aligned_cols=166 Identities=42% Similarity=0.790 Sum_probs=151.0
Q ss_pred CCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hcccccc-CCCCchHHHHHHHHHHHHHhcCCCCcccCccchhh
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~ 97 (203)
.|.+||.|+||||||||.||||.|++.+|+++++.. ...++.. .-.-.+.++.++..|+++++.++..++.|..|
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~f--- 339 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGF--- 339 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHH---
Confidence 488999999999999999999999999999999877 4444442 23556789999999999999999999999999
Q ss_pred hhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh----------------------hhHHhHHHHhhcCCC
Q psy10711 98 HELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE----------------------SGEKSWGEFRKKNKS 155 (203)
Q Consensus 98 ~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~----------------------~~~~~~~~~~~~~~~ 155 (203)
+..++.++..|.++.|||.+||+.++||.||+.+.+ .+++.|..+...+.+
T Consensus 340 -------K~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdS 412 (823)
T COG5560 340 -------KKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDS 412 (823)
T ss_pred -------HHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999842 577889999999999
Q ss_pred ccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 156 IISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 156 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
+|.++|.|-+++++.|..|+.++.+++||.+|+||+|-..
T Consensus 413 iItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~ 452 (823)
T COG5560 413 IITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSM 452 (823)
T ss_pred cHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhh
Confidence 9999999999999999999999999999999999999753
No 2
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-34 Score=233.76 Aligned_cols=160 Identities=31% Similarity=0.539 Sum_probs=130.4
Q ss_pred cCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcC-CCCcccCccchhhhhhh
Q psy10711 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAG-DSRYFSPQKFKVKHELV 101 (203)
Q Consensus 23 ~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~p~~~~~~~~~~ 101 (203)
+||.|+||||||||+||+|+++|+|+++++......... ......++.++|+.+|..++.+ ....+.|..+
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~------- 72 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCL-SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINL------- 72 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccc-cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHH-------
Confidence 699999999999999999999999999999865221001 1334568999999999999543 4457788888
Q ss_pred hHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCcccee
Q psy10711 102 GKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTF 181 (203)
Q Consensus 102 ~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~ 181 (203)
+.+++...+.|.+++||||+||+..||+.|+++....... ........+++.++|+|.+.+.++|..|++.+.+.
T Consensus 73 ---l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~ 147 (328)
T cd02660 73 ---LYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE--ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTV 147 (328)
T ss_pred ---HHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhccccc--ccccccCCceeEEecccEEEeeeEcCCCCCcccee
Confidence 8888888888999999999999999999999998542211 01112335789999999999999999999999999
Q ss_pred ecCeeeeeeCCCCC
Q psy10711 182 EVFSNVSLPLPSND 195 (203)
Q Consensus 182 e~f~~LsL~i~~~~ 195 (203)
|+|++|+|++|...
T Consensus 148 e~f~~lsl~i~~~~ 161 (328)
T cd02660 148 DPFLDLSLDIPNKS 161 (328)
T ss_pred cccceeeeeccccc
Confidence 99999999999863
No 3
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-34 Score=231.17 Aligned_cols=150 Identities=28% Similarity=0.423 Sum_probs=126.7
Q ss_pred CcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCC--------------CCcc
Q psy10711 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGD--------------SRYF 89 (203)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~--------------~~~~ 89 (203)
||.|+||||||||+||+|+++|+||+++++......... .....++.++|++++..|+... ..++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 79 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDV-VDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGI 79 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCc-CCccccHHHHHHHHHHHhcCCCcCCCcccccccccccccc
Confidence 999999999999999999999999999987432211111 2345679999999999998643 2368
Q ss_pred cCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEE
Q psy10711 90 SPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTV 169 (203)
Q Consensus 90 ~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~ 169 (203)
+|..| +.+++...+.|..++||||+||++.||+.|+++++. .....+.++|+|.+.+.+
T Consensus 80 ~p~~~----------~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~-----------~~~~~~~~~f~~~~~~~i 138 (311)
T cd02658 80 KPSMF----------KALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFK-----------NLGLNPNDLFKFMIEDRL 138 (311)
T ss_pred CcHHH----------HHHHhccChhhcccccccHHHHHHHHHHHHHHhhcc-----------cccCCchhheEEEeeEEE
Confidence 88888 999998899999999999999999999999998752 223467899999999999
Q ss_pred EcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 170 ICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 170 ~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
+|..|+..+.+.|+|++|+|++|...
T Consensus 139 ~C~~C~~~s~~~e~~~~lsL~l~~~~ 164 (311)
T cd02658 139 ECLSCKKVKYTSELSEILSLPVPKDE 164 (311)
T ss_pred EcCCCCCEEEeecceeEEeeeccccc
Confidence 99999999999999999999999764
No 4
>KOG1865|consensus
Probab=100.00 E-value=1.4e-34 Score=235.55 Aligned_cols=163 Identities=25% Similarity=0.451 Sum_probs=143.0
Q ss_pred ccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccch
Q psy10711 16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFK 95 (203)
Q Consensus 16 ~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~ 95 (203)
.+....++||.|+|||||+|||||||.++|++.++|++......+. ....|++|+|+..+.........+++|..+
T Consensus 102 ~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~---~~~~C~lc~~q~hi~~A~~~~g~pisP~~i- 177 (545)
T KOG1865|consen 102 DRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH---RAKFCMLCTFQAHITRALHNPGHPISPSQI- 177 (545)
T ss_pred cccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc---ccCeeeehHHHHHHHHHhcCCCCccChHHH-
Confidence 3445678999999999999999999999999999999987444443 345799999999999999988889999999
Q ss_pred hhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCC
Q psy10711 96 VKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQ 175 (203)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~ 175 (203)
+..+..+..+|..|+|+||||||++++|.++..+.. ......+...+.++|+.+|||.+++.++|..|+
T Consensus 178 ---------~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~--g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~ 246 (545)
T KOG1865|consen 178 ---------LSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLP--GHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCK 246 (545)
T ss_pred ---------HHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcC--CCccCCcccccceehhhhhccchhhceecccCC
Confidence 999999999999999999999999999999999841 112223445778899999999999999999999
Q ss_pred CccceeecCeeeeeeCCC
Q psy10711 176 ETSSTFEVFSNVSLPLPS 193 (203)
Q Consensus 176 ~~s~~~e~f~~LsL~i~~ 193 (203)
+++.++|+.++|+|+|..
T Consensus 247 ~vS~tyE~~~dltvei~d 264 (545)
T KOG1865|consen 247 GVSDTYEPYLDLTLEIQD 264 (545)
T ss_pred CcccccccccceEEEecc
Confidence 999999999999999983
No 5
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-33 Score=225.35 Aligned_cols=150 Identities=27% Similarity=0.413 Sum_probs=128.1
Q ss_pred CcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhhhhhhH
Q psy10711 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGK 103 (203)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~~~~~ 103 (203)
||.|+||||||||+||+|+++|+|++++++...... .......+++++|+.|+..|+.+. ..++|..+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~--------- 68 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR--GANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEF--------- 68 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc--ccccchhHHHHHHHHHHHHHHhCC-CcCCcHHH---------
Confidence 899999999999999999999999999988752211 112334689999999999999876 48999999
Q ss_pred HHHHHhhhhhcCC------CCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCC-C
Q psy10711 104 FKEEVGKMKRTFR------GYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQ-E 176 (203)
Q Consensus 104 ~~~~l~~~~~~f~------~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~-~ 176 (203)
+..++...+.|. .++||||+||+..||+.|+++++. .....+.+.++|+|++.+.++|..|+ .
T Consensus 69 -~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~---------~~~~~~~i~~~F~g~~~~~~~C~~C~~~ 138 (305)
T cd02657 69 -LQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPG---------AGSKGSFIDQLFGIELETKMKCTESPDE 138 (305)
T ss_pred -HHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcc---------cCCCCcHHHHhhceEEEEEEEcCCCCCC
Confidence 888888878884 459999999999999999999753 12346689999999999999999999 7
Q ss_pred ccceeecCeeeeeeCCCCC
Q psy10711 177 TSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 177 ~s~~~e~f~~LsL~i~~~~ 195 (203)
++.+.|+|++|+|+||...
T Consensus 139 ~~~~~e~f~~Lsl~i~~~~ 157 (305)
T cd02657 139 EEVSTESEYKLQCHISITT 157 (305)
T ss_pred CccccccceEEEeecCCCc
Confidence 8999999999999999863
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-33 Score=226.16 Aligned_cols=143 Identities=24% Similarity=0.416 Sum_probs=115.6
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchh
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~ 96 (203)
+...+++||.|+||||||||+||+|+++|+|++.+.+..... ....-...+..++..++........|..+
T Consensus 19 ~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~~~~~~~P~~~-- 89 (332)
T cd02671 19 ENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYNDELANQAPRRL-- 89 (332)
T ss_pred ccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhhcccccCHHHH--
Confidence 346789999999999999999999999999999987653110 01112222333344455444455668888
Q ss_pred hhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCC
Q psy10711 97 KHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQE 176 (203)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 176 (203)
++.++...+.|..++||||+||+..||+.|++ ++.++|+|.+.+.++|.+|++
T Consensus 90 --------~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~-------------------~i~~~F~g~~~~~~~C~~C~~ 142 (332)
T cd02671 90 --------LNALREVNPMYEGYLQHDAQEVLQCILGNIQE-------------------LVEKDFQGQLVLRTRCLECET 142 (332)
T ss_pred --------HHHHHHhccccCCccccCHHHHHHHHHHHHHH-------------------HHHhhhceEEEEEEEeCCCCC
Confidence 99999989999999999999999999999984 467899999999999999999
Q ss_pred ccceeecCeeeeeeCCCCC
Q psy10711 177 TSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 177 ~s~~~e~f~~LsL~i~~~~ 195 (203)
.+.+.|+|++|+|+|+...
T Consensus 143 ~s~~~E~f~~lsL~i~~~~ 161 (332)
T cd02671 143 FTERREDFQDISVPVQESE 161 (332)
T ss_pred eeceecccEEEEEEeCCCc
Confidence 9999999999999999763
No 7
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-33 Score=225.21 Aligned_cols=137 Identities=31% Similarity=0.519 Sum_probs=117.7
Q ss_pred CcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCC--CcccCccchhhhhhh
Q psy10711 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQKFKVKHELV 101 (203)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~~~~p~~~~~~~~~~ 101 (203)
||.|+||||||||+||+|++ .+++++|+.+|..|+.+.. .+++|..|
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f------- 49 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF------------------------ENLLTCLKDLFESISEQKKRTGVISPKKF------- 49 (300)
T ss_pred CccCCCcceehhHHHHHhhh------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHH-------
Confidence 99999999999999999987 2688899999999998753 46999999
Q ss_pred hHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHh-------HHHHhhcCCCccccccceeeeeEEEcCCC
Q psy10711 102 GKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKS-------WGEFRKKNKSIISELFYGQLKSTVICCNC 174 (203)
Q Consensus 102 ~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~-------~~~~~~~~~~~i~~~F~g~~~~~~~C~~C 174 (203)
+++++...+.|.+++||||||||..|||.|+++++...... +........+++.++|+|++.+.++|..|
T Consensus 50 ---~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C 126 (300)
T cd02663 50 ---ITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTC 126 (300)
T ss_pred ---HHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCC
Confidence 99999888999999999999999999999999986432111 01112244678999999999999999999
Q ss_pred CCccceeecCeeeeeeCCCC
Q psy10711 175 QETSSTFEVFSNVSLPLPSN 194 (203)
Q Consensus 175 ~~~s~~~e~f~~LsL~i~~~ 194 (203)
++.+.+.|+|++|+|+||+.
T Consensus 127 ~~~s~~~e~f~~Lsl~i~~~ 146 (300)
T cd02663 127 ETVSSRDETFLDLSIDVEQN 146 (300)
T ss_pred CCCccccceeEEeccCCCCc
Confidence 99999999999999999984
No 8
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-32 Score=229.25 Aligned_cols=158 Identities=29% Similarity=0.475 Sum_probs=129.8
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCC--CCcccCccc
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGD--SRYFSPQKF 94 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~p~~~ 94 (203)
...+|++||.|+||||||||+||+|+++|+||++++........ .....++.+++..++.++|.+. ...++|.+|
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~f 190 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPHEL 190 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc---cCCCcHHHHHHHHHHHHHhccccCCCccCHHHH
Confidence 34679999999999999999999999999999999986421100 1234589999999999999875 468999999
Q ss_pred hhhhhhhhHHHHHHhhhh-hcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCC
Q psy10711 95 KVKHELVGKFKEEVGKMK-RTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCN 173 (203)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~-~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~ 173 (203)
+.+++... +.|.+++||||+||+.+|||.|++++... .....+++++.|+|++.+.++|..
T Consensus 191 ----------l~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~--------~~~~~~ii~~~F~G~l~~~~~c~~ 252 (440)
T cd02669 191 ----------LQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGS--------KKPNSSIIHDCFQGKVQIETQKIK 252 (440)
T ss_pred ----------HHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccC--------CCCCCCcceeccCceEEEEEEeec
Confidence 88887654 56889999999999999999999988531 124568999999999999999875
Q ss_pred CC---------------CccceeecCeeeeeeCCCCC
Q psy10711 174 CQ---------------ETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 174 C~---------------~~s~~~e~f~~LsL~i~~~~ 195 (203)
|. ..+++.++|++|+|+||..+
T Consensus 253 ~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~ 289 (440)
T cd02669 253 PHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPP 289 (440)
T ss_pred ccccccccccccccccccceeeeccceEEEecCCCCc
Confidence 54 24667899999999999863
No 9
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.9e-33 Score=223.59 Aligned_cols=149 Identities=29% Similarity=0.459 Sum_probs=124.0
Q ss_pred CcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccc------cccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhh
Q psy10711 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSM------TAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97 (203)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~ 97 (203)
||.|+||||||||+||+|+++|+|+++++....... +........+++++|+.+|..|+.+...+++|..|
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f--- 77 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGF--- 77 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHH---
Confidence 899999999999999999999999999988652211 00001123589999999999999998889999999
Q ss_pred hhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCc
Q psy10711 98 HELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQET 177 (203)
Q Consensus 98 ~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~ 177 (203)
.+.+. +..++||||+||+..||+.|++++.... .....+++.++|+|.+.+.++|..|+..
T Consensus 78 -------~~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~-------~~~~~~~i~~~F~G~~~~~~~C~~C~~~ 138 (324)
T cd02668 78 -------VKALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSK-------NPDLKNIVQDLFRGEYSYVTQCSKCGRE 138 (324)
T ss_pred -------HHHhC-----CCCccccCHHHHHHHHHHHHHHHHhhcc-------CCcccchhhhhcceEEEEEEEeCCCCCc
Confidence 77763 5678999999999999999999885310 1133468899999999999999999999
Q ss_pred cceeecCeeeeeeCCCC
Q psy10711 178 SSTFEVFSNVSLPLPSN 194 (203)
Q Consensus 178 s~~~e~f~~LsL~i~~~ 194 (203)
+.+.|+|++|+|+||+.
T Consensus 139 s~~~e~f~~l~l~i~~~ 155 (324)
T cd02668 139 SSLPSKFYELELQLKGH 155 (324)
T ss_pred cccccccEEEEEEeccc
Confidence 99999999999999864
No 10
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-33 Score=222.16 Aligned_cols=160 Identities=28% Similarity=0.501 Sum_probs=133.2
Q ss_pred ccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhhhhh
Q psy10711 22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELV 101 (203)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~~~ 101 (203)
|+||.|+||||||||+||+|+++|+|++++++....... .....++.++++.++..++.+....+.|..+
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~------- 70 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC---CNEGFCMMCALEAHVERALASSGPGSAPRIF------- 70 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc---cCCcchHHHHHHHHHHHHHhCCCCccChHHH-------
Confidence 689999999999999999999999999999875422111 2234589999999999999888888999999
Q ss_pred hHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhH-HHHhhcCCCccccccceeeeeEEEcCCCCCccce
Q psy10711 102 GKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSW-GEFRKKNKSIISELFYGQLKSTVICCNCQETSST 180 (203)
Q Consensus 102 ~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~-~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~ 180 (203)
.+++....+.|..+.||||+||+..||+.|+++......... ........+++.++|+|.+.+.++|..|+..+.+
T Consensus 71 ---~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~ 147 (304)
T cd02661 71 ---SSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNT 147 (304)
T ss_pred ---HHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCc
Confidence 888888888999999999999999999999988753221110 0112234578999999999999999999999999
Q ss_pred eecCeeeeeeCCCC
Q psy10711 181 FEVFSNVSLPLPSN 194 (203)
Q Consensus 181 ~e~f~~LsL~i~~~ 194 (203)
.|+|+.|+|+||+.
T Consensus 148 ~e~~~~l~l~i~~~ 161 (304)
T cd02661 148 YDPFLDLSLDIKGA 161 (304)
T ss_pred cccceeeeeecCCC
Confidence 99999999999976
No 11
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2.7e-32 Score=218.97 Aligned_cols=154 Identities=25% Similarity=0.331 Sum_probs=122.6
Q ss_pred ccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccc------------cccCC-----CCchHHHHHHHHHHHHHhcC
Q psy10711 22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSM------------TAAYS-----KTSGKLAEEFQLIFNMLWAG 84 (203)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~------------~~~~~-----~~~~~~~~~l~~l~~~l~~~ 84 (203)
|+||.|+||||||||+||+|+++|+||++++....... ..... ....+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999998651110 00000 11236999999999999999
Q ss_pred CCCcccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHh---HHHHhhcCCCcccccc
Q psy10711 85 DSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKS---WGEFRKKNKSIISELF 161 (203)
Q Consensus 85 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~---~~~~~~~~~~~i~~~F 161 (203)
....+.|..+ +..+.. .||||+||+..+|++|+.+++...... .........++|.++|
T Consensus 81 ~~~~v~P~~~----------l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF 142 (343)
T cd02666 81 NTRSVTPSKE----------LAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLF 142 (343)
T ss_pred CCCccCcHHH----------HHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhc
Confidence 9899999988 655432 899999999999999999997432210 0011124457899999
Q ss_pred ceeeeeEEEcCCCC---CccceeecCeeeeeeCCC
Q psy10711 162 YGQLKSTVICCNCQ---ETSSTFEVFSNVSLPLPS 193 (203)
Q Consensus 162 ~g~~~~~~~C~~C~---~~s~~~e~f~~LsL~i~~ 193 (203)
+|++.+.++|..|+ ..+.+.|+|++|+|+|+.
T Consensus 143 ~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~ 177 (343)
T cd02666 143 SGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGK 177 (343)
T ss_pred eeeEEEEEEecccCCCCCCccccceeEEEEEecCc
Confidence 99999999999997 678899999999999997
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=8.5e-31 Score=211.51 Aligned_cols=150 Identities=28% Similarity=0.429 Sum_probs=121.7
Q ss_pred CccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhhhh
Q psy10711 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHEL 100 (203)
Q Consensus 21 ~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~~ 100 (203)
|++||.|+||||||||+||+|+++|+|++++++.... .......++.++++.+|..|..+....+.|..+
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~------ 70 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELT------ 70 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc----ccCcccccHHHHHHHHHHHHHhCCccccCcchh------
Confidence 6899999999999999999999999999999986311 112234579999999999999877655555544
Q ss_pred hhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccce
Q psy10711 101 VGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSST 180 (203)
Q Consensus 101 ~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~ 180 (203)
..........|..++||||+||+..+++.|+++++. ....+++.++|+|.+...++|..|+..+.+
T Consensus 71 ----~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~----------~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~ 136 (334)
T cd02659 71 ----DKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKG----------TGQEGLIKNLFGGKLVNYIICKECPHESER 136 (334)
T ss_pred ----heeccCCCCCCCcccchhHHHHHHHHHHHHHHHhcc----------CcccchhhhhCceEEEeEEEecCCCceecc
Confidence 211122235677899999999999999999998753 123457999999999999999999999999
Q ss_pred eecCeeeeeeCCCC
Q psy10711 181 FEVFSNVSLPLPSN 194 (203)
Q Consensus 181 ~e~f~~LsL~i~~~ 194 (203)
.|+|++|+|++++.
T Consensus 137 ~e~f~~l~l~i~~~ 150 (334)
T cd02659 137 EEYFLDLQVAVKGK 150 (334)
T ss_pred cccceEEEEEcCCC
Confidence 99999999999963
No 13
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=9.6e-31 Score=210.44 Aligned_cols=133 Identities=35% Similarity=0.546 Sum_probs=114.0
Q ss_pred CcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCcc-chhhhhhhh
Q psy10711 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQK-FKVKHELVG 102 (203)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~-~~~~~~~~~ 102 (203)
||.|+||||||||+||+|+++|+||+++++..... ......+..+++.+|..+..+...++.|.. +
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-----~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~-------- 67 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-----LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYF-------- 67 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-----cCCcchHHHHHHHHHHHHhhcCCcccCCHHHH--------
Confidence 89999999999999999999999999999875321 122346888999999999887767777765 5
Q ss_pred HHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceee
Q psy10711 103 KFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFE 182 (203)
Q Consensus 103 ~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e 182 (203)
+...+ .+.|..++|||||||+..||+.|+. ++.++|+|.+.+.++|.+|+.++.+.|
T Consensus 68 --l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~-------------------~i~~~F~G~~~~~i~C~~C~~~s~~~e 124 (327)
T cd02664 68 --LEASR--PPWFTPGSQQDCSEYLRYLLDRLHT-------------------LIEKMFGGKLSTTIRCLNCNSTSARTE 124 (327)
T ss_pred --HHHhc--ccccCCCCcCCHHHHHHHHHHHHHH-------------------HHHhhCcEEeEeEEEcCCCCCEecccc
Confidence 44433 4678899999999999999999992 578999999999999999999999999
Q ss_pred cCeeeeeeCC
Q psy10711 183 VFSNVSLPLP 192 (203)
Q Consensus 183 ~f~~LsL~i~ 192 (203)
+|..|+|+||
T Consensus 125 ~f~~l~L~i~ 134 (327)
T cd02664 125 RFRDLDLSFP 134 (327)
T ss_pred cceeeecCCC
Confidence 9999999998
No 14
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=6e-31 Score=207.37 Aligned_cols=114 Identities=41% Similarity=0.755 Sum_probs=100.5
Q ss_pred CcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhhhhhhH
Q psy10711 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGK 103 (203)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~~~~~ 103 (203)
||.|+||||||||+||+|+++|+||+++++ +|..+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~------------------------------------~P~~~--------- 35 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE------------------------------------TPKEL--------- 35 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH------------------------------------CHHHH---------
Confidence 999999999999999999999999999876 55566
Q ss_pred HHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceeec
Q psy10711 104 FKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEV 183 (203)
Q Consensus 104 ~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~ 183 (203)
+..++...+.|..++||||+||+..||+.|+. ++.++|+|.+.+.++|.+|++.+.+.|+
T Consensus 36 -~~~l~~~~~~f~~~~QqDA~Efl~~lld~l~~-------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~ 95 (279)
T cd02667 36 -FSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-------------------FIDSIFGGELTSTIMCESCGTVSLVYEP 95 (279)
T ss_pred -HHHHHHhhHhhcCCchhhHHHHHHHHHHHHHH-------------------hhhhhcceEEEEEEEcCCCCCEeCcccc
Confidence 77777777889999999999999999999992 5789999999999999999999999999
Q ss_pred CeeeeeeCCCCC--eeeEEEe
Q psy10711 184 FSNVSLPLPSND--YCSLRVS 202 (203)
Q Consensus 184 f~~LsL~i~~~~--~~~L~~~ 202 (203)
|++|+|+++... ..+|+.|
T Consensus 96 f~~L~Lp~~~~~~~~~sL~~~ 116 (279)
T cd02667 96 FLDLSLPRSDEIKSECSIESC 116 (279)
T ss_pred ceEEecCCCcccCCCCCHHHH
Confidence 999999987543 5555544
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.8e-31 Score=199.51 Aligned_cols=174 Identities=30% Similarity=0.525 Sum_probs=141.8
Q ss_pred CCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hccccccC--CCCchHHHHHHHHHHHHHhcCCCCcccCccchh
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAY--SKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~ 96 (203)
..+.||.|.|||||||++||||+++..+...++... ...++... ..........|..+.+.+-.-....|+|..|
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF-- 146 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNF-- 146 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHH--
Confidence 457999999999999999999999999998555443 22222211 2222345666777777776666678999999
Q ss_pred hhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh-------------------------hhHHhHHHHhh
Q psy10711 97 KHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE-------------------------SGEKSWGEFRK 151 (203)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------------------------~~~~~~~~~~~ 151 (203)
++.++...+.|++..|||+|||+.++||.||+++.. .+...|+.+..
T Consensus 147 --------~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~ 218 (415)
T COG5533 147 --------IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLR 218 (415)
T ss_pred --------HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhc
Confidence 999999999999999999999999999999999843 23346777788
Q ss_pred cCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCCeeeEEEeC
Q psy10711 152 KNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF 203 (203)
Q Consensus 152 ~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~L~~~~ 203 (203)
.+.+.+.+.|.|+..++.+|..|++.|+++.+|..|.++++....+.|..||
T Consensus 219 sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~ 270 (415)
T COG5533 219 SNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECI 270 (415)
T ss_pred cchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHH
Confidence 8889999999999999999999999999999999999999998877766653
No 16
>KOG0944|consensus
Probab=99.95 E-value=4.2e-28 Score=200.59 Aligned_cols=154 Identities=27% Similarity=0.514 Sum_probs=132.4
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCC---------
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR--------- 87 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--------- 87 (203)
-.++|.+||+|+||+||+|||+|+|+++|.|........ ....-....+..++-+++.++...|.++...
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~-~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~q 380 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQE-RIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQ 380 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhcccc-ceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCcccc
Confidence 348999999999999999999999999999998887763 2222222566789999999999999887643
Q ss_pred -cccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeee
Q psy10711 88 -YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLK 166 (203)
Q Consensus 88 -~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~ 166 (203)
.|+|..| +..+++..+.|+..+||||+|||.+||+.|++... .....+.++|++.+.
T Consensus 381 ngIsP~mF----------K~~igknHpeFst~~QQDA~EFllfLl~ki~~n~r------------s~~~nptd~frF~ve 438 (763)
T KOG0944|consen 381 NGISPLMF----------KALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSR------------SSLPNPTDLFRFEVE 438 (763)
T ss_pred CCcCHHHH----------HHHHcCCCccccchhhhhHHHHHHHHHHHHhhccc------------ccCCCHHHHHHhhhh
Confidence 4677778 99999999999999999999999999999997653 222578999999999
Q ss_pred eEEEcCCCCCccceeecCeeeeeeCCC
Q psy10711 167 STVICCNCQETSSTFEVFSNVSLPLPS 193 (203)
Q Consensus 167 ~~~~C~~C~~~s~~~e~f~~LsL~i~~ 193 (203)
.++.|..|+++++++++-+.+.|+||.
T Consensus 439 ~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 439 DRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred hhhhhhccccccccchhheeeEeeccc
Confidence 999999999999999999999999985
No 17
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.94 E-value=9.3e-27 Score=181.37 Aligned_cols=149 Identities=37% Similarity=0.702 Sum_probs=120.8
Q ss_pred ccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh--hccccccCCCCchHHHHHHHHHHHHHhcC--CCCcccCccchhh
Q psy10711 22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF--KRSMTAAYSKTSGKLAEEFQLIFNMLWAG--DSRYFSPQKFKVK 97 (203)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~p~~~~~~ 97 (203)
++||.|.||||||||+||+|+++|+|++++.+.. .............++.++++.++..++.. ....+.|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~--- 77 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDF--- 77 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHH---
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeeccc---
Confidence 5899999999999999999999999999999862 11111111233457999999999999998 6678999999
Q ss_pred hhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhH-HhHHHHhhcCCCccccccceeeeeEEEcCCCCC
Q psy10711 98 HELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGE-KSWGEFRKKNKSIISELFYGQLKSTVICCNCQE 176 (203)
Q Consensus 98 ~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~-~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 176 (203)
..+++...+.|..++||||+||+..+++.|+++...... ..+........+++.++|++.+...+.|..|+.
T Consensus 78 -------~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~ 150 (269)
T PF00443_consen 78 -------INALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKN 150 (269)
T ss_dssp -------HHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTC
T ss_pred -------cccccccccccccccccchhhhhcccccccchhhccccccccccccccccccccccccccccccccccccccc
Confidence 999999888899999999999999999999999865322 233455567778899999999999999999998
Q ss_pred ccce
Q psy10711 177 TSST 180 (203)
Q Consensus 177 ~s~~ 180 (203)
...+
T Consensus 151 ~~~~ 154 (269)
T PF00443_consen 151 SQSS 154 (269)
T ss_dssp EEEE
T ss_pred cccc
Confidence 7443
No 18
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2.6e-27 Score=182.76 Aligned_cols=97 Identities=41% Similarity=0.758 Sum_probs=86.0
Q ss_pred CcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhhhhhhH
Q psy10711 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGK 103 (203)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~~~~~ 103 (203)
||.|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999987631
Q ss_pred HHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccc-eee
Q psy10711 104 FKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSS-TFE 182 (203)
Q Consensus 104 ~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~-~~e 182 (203)
+|||||||+..||+.|+. .+.++|.|.+.+.++|..|++.+. +.|
T Consensus 33 ---------------~QqDa~EFl~~ll~~l~~-------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e 78 (240)
T cd02662 33 ---------------EQQDAHELFQVLLETLEQ-------------------LLKFPFDGLLASRIVCLQCGESSKVRYE 78 (240)
T ss_pred ---------------hhcCHHHHHHHHHHHHHH-------------------hccCccccEEEEEEEeCCCCCccCccee
Confidence 699999999999999993 467899999999999999999866 599
Q ss_pred cCeeeeeeCCCCC---eeeEEEe
Q psy10711 183 VFSNVSLPLPSND---YCSLRVS 202 (203)
Q Consensus 183 ~f~~LsL~i~~~~---~~~L~~~ 202 (203)
+|++|+|+||..+ ..+|+.|
T Consensus 79 ~f~~LsL~ip~~~~~~~~sl~~~ 101 (240)
T cd02662 79 SFTMLSLPVPNQSSGSGTTLEHC 101 (240)
T ss_pred eeeeeEecccccCCCCCCCHHHH
Confidence 9999999999875 4555443
No 19
>KOG1868|consensus
Probab=99.93 E-value=1.5e-26 Score=195.91 Aligned_cols=176 Identities=38% Similarity=0.659 Sum_probs=143.2
Q ss_pred CCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hccccccCCCCchHHHHHHHHHHHHHhcC-CCCcccCccch
Q psy10711 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAG-DSRYFSPQKFK 95 (203)
Q Consensus 18 ~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~p~~~~ 95 (203)
...+.+||.|+|||||||++||||+.++.||..+++.. ...+..........+..++..++..++.. ...++.|..|
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f- 375 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF- 375 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH-
Confidence 46788999999999999999999999999997666665 44444222344457777777777777766 5568999999
Q ss_pred hhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhh-------------------------hHHhHHHHh
Q psy10711 96 VKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKES-------------------------GEKSWGEFR 150 (203)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~-------------------------~~~~~~~~~ 150 (203)
...++...+.|.++.|||||||+..+++.||+++... +...|....
T Consensus 376 ---------~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~ 446 (653)
T KOG1868|consen 376 ---------IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYL 446 (653)
T ss_pred ---------HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhc
Confidence 9999999999999899999999999999999998542 122455555
Q ss_pred hcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCCe----eeEEEeC
Q psy10711 151 KKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDY----CSLRVSF 203 (203)
Q Consensus 151 ~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~----~~L~~~~ 203 (203)
....+.+.++|.|++++.++|..|+..+.++++|.+|+|+||..+. ++|+.|+
T Consensus 447 ~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~ 503 (653)
T KOG1868|consen 447 EEEDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCL 503 (653)
T ss_pred cccchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhh
Confidence 5445558999999999999999999999999999999999999873 4577664
No 20
>KOG1873|consensus
Probab=99.92 E-value=1.1e-25 Score=188.20 Aligned_cols=157 Identities=30% Similarity=0.504 Sum_probs=125.1
Q ss_pred ccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhcc----ccccC----------CCCchHHHHHHHHHHHHH
Q psy10711 16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRS----MTAAY----------SKTSGKLAEEFQLIFNML 81 (203)
Q Consensus 16 ~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~----~~~~~----------~~~~~~~~~~l~~l~~~l 81 (203)
.++....+||.|+|||||+|||+|.|..+|.+++.+....... +..+. -....++..+|.. +..|
T Consensus 199 ~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~ 277 (877)
T KOG1873|consen 199 KRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEM 277 (877)
T ss_pred ccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhh
Confidence 4556778999999999999999999999999999998776221 11110 1234567788887 5666
Q ss_pred hcCCCCcccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCcccccc
Q psy10711 82 WAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELF 161 (203)
Q Consensus 82 ~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F 161 (203)
.......+.|..| ...+....|+|.+++||||||+|+.|||.|..|.-.. ....|...|
T Consensus 278 ~e~~ksv~~Pr~l----------F~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~-----------~kk~Il~~f 336 (877)
T KOG1873|consen 278 SETTKSVITPRTL----------FGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRR-----------RKKNILSNF 336 (877)
T ss_pred hhccCCccCHHHH----------HHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHH-----------HHHhHHHhh
Confidence 6777789999999 9999999999999999999999999999998876421 112377888
Q ss_pred ceeeeeEEEcCCCCCccceeecCeeeeeeCCCC
Q psy10711 162 YGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN 194 (203)
Q Consensus 162 ~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~ 194 (203)
+|+..+...|.+|++.+..+|+|.+++|++|..
T Consensus 337 G~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~ 369 (877)
T KOG1873|consen 337 GGETSSLVSCLECGQKSKVYEPFKDLSLPVPLS 369 (877)
T ss_pred CccccchhhhhhccchhhcccccccCCcccccc
Confidence 888888888888887777888888888888743
No 21
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-24 Score=172.99 Aligned_cols=155 Identities=25% Similarity=0.400 Sum_probs=130.0
Q ss_pred CCC-ccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCC----CcccCcc
Q psy10711 19 GPG-LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS----RYFSPQK 93 (203)
Q Consensus 19 ~~~-~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~p~~ 93 (203)
.++ .+||.|+||+||+||++|.|+....+...+........+.. ..+..++.|++.+++..|..... ..++|..
T Consensus 299 ~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~-~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~ 377 (749)
T COG5207 299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYM-KNPLECLFCQLMKLLSKMKETPDNEYVNGISPLD 377 (749)
T ss_pred CCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeee-cCCchhHHHHHHHHHhhccCCCCccccCCcChhh
Confidence 455 79999999999999999999998887766655542222222 34457899999999999987763 3789999
Q ss_pred chhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCC
Q psy10711 94 FKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCN 173 (203)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~ 173 (203)
| +..++...+.|...+||||+|||.+||+.|.+... +...+.|.++|.+.+..++.|..
T Consensus 378 f----------k~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~-----------S~~~~~It~lf~Fe~e~rlsC~~ 436 (749)
T COG5207 378 F----------KMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGER-----------SYLIPPITSLFEFEVERRLSCSG 436 (749)
T ss_pred H----------HHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccc-----------hhcCCCcchhhhhhhcceecccc
Confidence 9 99999999999999999999999999999997543 24456788999999999999999
Q ss_pred CCCccceeecCeeeeeeCCCCC
Q psy10711 174 CQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 174 C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
|+.+++++++...+.+.+.+..
T Consensus 437 C~~v~ySye~~~~i~i~le~n~ 458 (749)
T COG5207 437 CMDVSYSYESMLMICIFLEGND 458 (749)
T ss_pred cccccccccceEEEEeecccCc
Confidence 9999999999999999988764
No 22
>KOG1863|consensus
Probab=99.89 E-value=6.3e-24 Score=191.78 Aligned_cols=154 Identities=28% Similarity=0.417 Sum_probs=132.3
Q ss_pred cCCCCc-cCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccch
Q psy10711 17 TVGPGL-TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFK 95 (203)
Q Consensus 17 ~~~~~~-~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~ 95 (203)
++.++. +||.|.||||||||+||+|+.++.||+.+++... ..........+..+|+.+|..|+.+..+++++..+
T Consensus 164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~---~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~- 239 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP---FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSEL- 239 (1093)
T ss_pred hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC---CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhh-
Confidence 455565 9999999999999999999999999999999873 11113344569999999999999999999999999
Q ss_pred hhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCC
Q psy10711 96 VKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQ 175 (203)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~ 175 (203)
...+++.. ....+|||++||...|+|.|++.++... ....+.++|.|.+.+.+.|..|.
T Consensus 240 ---------~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~----------~~~~l~~lf~g~~~~~i~c~~~~ 298 (1093)
T KOG1863|consen 240 ---------TKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK----------VENTLQDLFTGKMKSVIKCIDVD 298 (1093)
T ss_pred ---------hhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh----------hhhhhhhhhcCCcceEEEEEeee
Confidence 88886654 4457999999999999999999987432 24579999999999999999999
Q ss_pred CccceeecCeeeeeeCCCCC
Q psy10711 176 ETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 176 ~~s~~~e~f~~LsL~i~~~~ 195 (203)
..+.+.|.|+++.|++.+..
T Consensus 299 ~~s~r~e~f~d~ql~~~g~~ 318 (1093)
T KOG1863|consen 299 FESSRSESFLDLQLNGKGVK 318 (1093)
T ss_pred eeccccccccCccccccchh
Confidence 99999999999999998865
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-24 Score=180.51 Aligned_cols=151 Identities=25% Similarity=0.399 Sum_probs=128.0
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchh
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~ 96 (203)
+...|.+||+|.|.||||||+||+|+.+..||+.+....... ......++.+|+++|..|+.+. .++++.++
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~-----p~grdSValaLQr~Fynlq~~~-~PvdTtel-- 259 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH-----PRGRDSVALALQRLFYNLQTGE-EPVDTTEL-- 259 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC-----CCccchHHHHHHHHHHHHhccC-CCcchHHh--
Confidence 345699999999999999999999999999999999876322 2334678999999999999877 78898888
Q ss_pred hhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCC
Q psy10711 97 KHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQE 176 (203)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 176 (203)
.+..++ ..+....|||.|||-+.|.|.|+..+++. ....-+..+|-|++++.+.|.+-..
T Consensus 260 --------trsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt----------~VEnaln~ifVgkmksyikCvnvny 319 (1089)
T COG5077 260 --------TRSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGT----------VVENALNGIFVGKMKSYIKCVNVNY 319 (1089)
T ss_pred --------hhhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCC----------hhhhHHhHHHHHHhhceeeEEEech
Confidence 665543 45667899999999999999999987642 2234678999999999999999999
Q ss_pred ccceeecCeeeeeeCCCCC
Q psy10711 177 TSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 177 ~s~~~e~f~~LsL~i~~~~ 195 (203)
++.+.|.||+++|++++.+
T Consensus 320 EsarvedfwdiqlNvK~~k 338 (1089)
T COG5077 320 ESARVEDFWDIQLNVKGMK 338 (1089)
T ss_pred hhhhHHHHHHHHhcccchh
Confidence 9999999999999998864
No 24
>KOG1867|consensus
Probab=99.87 E-value=1.2e-22 Score=169.04 Aligned_cols=165 Identities=34% Similarity=0.590 Sum_probs=137.4
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCC-CCcccCccchhh
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGD-SRYFSPQKFKVK 97 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~p~~~~~~ 97 (203)
+.++.|+.|+|+||+||++||+|.+.+..++..+..... ..+......++.+++..++..++.+. ...+.|..+
T Consensus 158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~--~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~--- 232 (492)
T KOG1867|consen 158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHS--KEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFEL--- 232 (492)
T ss_pred eecccccccccHHHHHHHHHHHhhccchhhccchhhhcc--cCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHH---
Confidence 557899999999999999999999999888888776633 22223336789999999999999999 889999999
Q ss_pred hhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHh-HHHHhhcCCCccccccceeeeeEEEcCCCCC
Q psy10711 98 HELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKS-WGEFRKKNKSIISELFYGQLKSTVICCNCQE 176 (203)
Q Consensus 98 ~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~-~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 176 (203)
+..+|+..+.+.+++|||||||+..+++.++.+.+...+.. -........+++...|.|.+...++|..|+.
T Consensus 233 -------l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~ 305 (492)
T KOG1867|consen 233 -------LNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGS 305 (492)
T ss_pred -------HHHHHHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcc
Confidence 99999999999999999999999999999998872111110 0011114478999999999999999999999
Q ss_pred ccceeecCeeeeeeCCCCC
Q psy10711 177 TSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 177 ~s~~~e~f~~LsL~i~~~~ 195 (203)
.+.++++|++|+|+||+.-
T Consensus 306 ~S~~~dpf~disL~i~~~~ 324 (492)
T KOG1867|consen 306 KSTTYDPFMDISLDIPDQF 324 (492)
T ss_pred eeeeccCccceeeecchhc
Confidence 9999999999999999653
No 25
>KOG1866|consensus
Probab=99.86 E-value=1.1e-22 Score=170.10 Aligned_cols=173 Identities=26% Similarity=0.413 Sum_probs=142.2
Q ss_pred eeccccc-cccccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhc-cccccCCCCchHHHHHHHHHHHHHhc
Q psy10711 6 FISYRIK-IIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKR-SMTAAYSKTSGKLAEEFQLIFNMLWA 83 (203)
Q Consensus 6 ~~~~~~~-p~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~l~~ 83 (203)
...+..- |+.++...+++||+|-|+|||||+++|-++++|.++..+...... +.+.- .....+++.++.+|..+..
T Consensus 78 lyE~~YlppVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~--s~~e~vl~~lQ~iF~hL~~ 155 (944)
T KOG1866|consen 78 LYEWEYLPPVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDM--SGDEKVLRHLQVIFGHLAA 155 (944)
T ss_pred ccCcccCCCcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhh--cchHHHHHHHHHHHHHHHH
Confidence 3344444 444466778999999999999999999999999999998887633 21211 1122399999999999999
Q ss_pred CCCCcccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccce
Q psy10711 84 GDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYG 163 (203)
Q Consensus 84 ~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g 163 (203)
+.-..+-|..| .+.++.........+||||-||+..|+|.+++.+|.. .....+...|+|
T Consensus 156 s~lQyyVPeg~----------Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKkl----------g~p~lf~n~f~G 215 (944)
T KOG1866|consen 156 SQLQYYVPEGF----------WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKL----------GHPQLFSNTFGG 215 (944)
T ss_pred HhhhhhcchhH----------HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHh----------CCcHHHHHHhcC
Confidence 99889999999 8888777777788999999999999999999999742 445578899999
Q ss_pred eeeeEEEcCCCCCccceeecCeeeeeeCCCCC-eeeEE
Q psy10711 164 QLKSTVICCNCQETSSTFEVFSNVSLPLPSND-YCSLR 200 (203)
Q Consensus 164 ~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~-~~~L~ 200 (203)
....+..|.+|.+.....|+|..|+|+|...+ +.+||
T Consensus 216 ~ysdqKIC~~CpHRY~~eE~F~~l~l~i~~~nLeesLe 253 (944)
T KOG1866|consen 216 SYSDQKICQGCPHRYECEESFTTLNLDIRHQNLEESLE 253 (944)
T ss_pred ccchhhhhccCCcccCccccceeeeeecccchHHHHHH
Confidence 99999999999999999999999999999554 44443
No 26
>KOG1870|consensus
Probab=99.86 E-value=2e-21 Score=171.80 Aligned_cols=175 Identities=40% Similarity=0.729 Sum_probs=151.2
Q ss_pred ccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhcc-ccc-cCCCCchHHHHHHHHHHHHHhcCCCCcccCcc
Q psy10711 16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRS-MTA-AYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQK 93 (203)
Q Consensus 16 ~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~-~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~ 93 (203)
....+|.+||.|+||||||||.+|+|.+.+.++++++...... ++. ........+..++..+...+|......+.|..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 3446789999999999999999999999999999999877333 222 22455678899999999999999987899999
Q ss_pred chhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh-------------------hhHHhHHHHhhcCC
Q psy10711 94 FKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE-------------------SGEKSWGEFRKKNK 154 (203)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------------------~~~~~~~~~~~~~~ 154 (203)
+ ...+....+.|.++.|||.+||+.+++|.+|+.+.. .+.+.|........
T Consensus 320 ~----------~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~ 389 (842)
T KOG1870|consen 320 F----------RTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNR 389 (842)
T ss_pred h----------hhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhcc
Confidence 9 999999888999999999999999999999998832 34556788888999
Q ss_pred CccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCCeeeEE
Q psy10711 155 SIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLR 200 (203)
Q Consensus 155 ~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~L~ 200 (203)
+++.++|.|..++.+.|..|+.++.++++|..|+|++|......++
T Consensus 390 s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~ 435 (842)
T KOG1870|consen 390 SVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLE 435 (842)
T ss_pred ceeeeeecceecccccCccCCCceEEeeccccccccCCCCccccee
Confidence 9999999999999999999999999999999999999977644443
No 27
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.85 E-value=3.9e-22 Score=153.76 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=65.5
Q ss_pred hhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeee
Q psy10711 109 GKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVS 188 (203)
Q Consensus 109 ~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~Ls 188 (203)
++..+.|.+++||||||||++||+.|++++..................+.+.|+|.+++.++|..|++++.+.|+|++|+
T Consensus 22 ~~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~ 101 (245)
T cd02673 22 GKINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLD 101 (245)
T ss_pred hhhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceec
Confidence 33456899999999999999999999998753211000000001112346789999999999999999999999999999
Q ss_pred eeCCCCC
Q psy10711 189 LPLPSND 195 (203)
Q Consensus 189 L~i~~~~ 195 (203)
|++|..+
T Consensus 102 L~i~~~~ 108 (245)
T cd02673 102 VSMIDNK 108 (245)
T ss_pred cccccCC
Confidence 9999864
No 28
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.84 E-value=8.7e-22 Score=151.03 Aligned_cols=58 Identities=57% Similarity=0.957 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 119 EQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 119 ~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
+||||+||+..||+.|+ +.+.++|+|.+.+.++|..|+..+.+.|+|+.|+|++|...
T Consensus 21 ~QqDa~Ef~~~ll~~l~-------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~ 78 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH-------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGS 78 (230)
T ss_pred hhhhHHHHHHHHHHHHh-------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEeccccc
Confidence 69999999999999999 25789999999999999999999999999999999999865
No 29
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.81 E-value=4.5e-20 Score=146.66 Aligned_cols=155 Identities=23% Similarity=0.304 Sum_probs=129.5
Q ss_pred cCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHh-cCCCCcccCccchhhhhhh
Q psy10711 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQKFKVKHELV 101 (203)
Q Consensus 23 ~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~p~~~~~~~~~~ 101 (203)
+||.|.+++||+||+||+|+++|++|+.++.+. . .....|++++|+-||++|. .+....+.+..|
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~------c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNf------- 66 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E------CPKEFCLLCELGFLFDMLDSKAKGINCQASNF------- 66 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C------CCccccHHHHHHHHHHHhhhhcCCCcChHHHH-------
Confidence 599999999999999999999999999999986 1 3334799999999999999 888888888888
Q ss_pred hHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHH---hHHHHhhcCCCccccccceeeeeEEEcCCCCCcc
Q psy10711 102 GKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEK---SWGEFRKKNKSIISELFYGQLKSTVICCNCQETS 178 (203)
Q Consensus 102 ~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~---~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s 178 (203)
+++++.....-..+.|+|.++|+++|+++|+.++...... ..........+.+.++|+......++|..|+..+
T Consensus 67 ---lr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~ 143 (295)
T PF13423_consen 67 ---LRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHES 143 (295)
T ss_pred ---HHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeE
Confidence 8888776544555779999999999999999998643221 0111122445679999999999999999999999
Q ss_pred ceeecCeeeeeeCCCC
Q psy10711 179 STFEVFSNVSLPLPSN 194 (203)
Q Consensus 179 ~~~e~f~~LsL~i~~~ 194 (203)
.+.+....+.|..|..
T Consensus 144 ~~~~~~~~~~l~yp~~ 159 (295)
T PF13423_consen 144 VKESSTLVLDLPYPPS 159 (295)
T ss_pred EeecceeeeeccCCCC
Confidence 9999999999998884
No 30
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.79 E-value=3.6e-20 Score=140.62 Aligned_cols=73 Identities=25% Similarity=0.381 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 119 EQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 119 ~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
.||||+||+..||+.|+++++...... .......++|.++|+|.+.+.+.| |+..+.+.|+|++|+|+|.+..
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~--~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~ 93 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAI--SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYG 93 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc--cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCC
Confidence 499999999999999999986422110 011245578999999999988777 7778899999999999998753
No 31
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=9.5e-19 Score=134.56 Aligned_cols=75 Identities=45% Similarity=0.700 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 119 EQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 119 ~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
.||||+||+..+++.|++++...... ........+.+.++|+|.+...+.|..|+..+.+.+.+..++|++|...
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~--~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~ 95 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR--TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKG 95 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc--ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCC
Confidence 69999999999999999998642111 1111234578999999999999999999988888888888888888763
No 32
>KOG2026|consensus
Probab=99.70 E-value=7.5e-17 Score=126.74 Aligned_cols=152 Identities=33% Similarity=0.506 Sum_probs=124.3
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCC--CcccCccchh
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQKFKV 96 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~~~~p~~~~~ 96 (203)
.+|.+||.|+-++=|.|+++|+|.+.+++|++++.... ..+....++..|..+..++|.+.. ..++|.++
T Consensus 131 LpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n------~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~-- 202 (442)
T KOG2026|consen 131 LPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN------YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEF-- 202 (442)
T ss_pred eeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc------ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHH--
Confidence 67999999999999999999999999999999988642 123345799999999999999874 48999999
Q ss_pred hhhhhhHHHHHHh-hhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCC--
Q psy10711 97 KHELVGKFKEEVG-KMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCN-- 173 (203)
Q Consensus 97 ~~~~~~~~~~~l~-~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~-- 173 (203)
++++. .....|..++|-|+.||+.|||+.||..+.+ ..+..++|++.|+|.++....=..
T Consensus 203 --------lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~---------~k~~~SIi~~~fqG~~ri~k~~~~~~ 265 (442)
T KOG2026|consen 203 --------LQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRG---------SKKASSIIHKSFQGEVRIVKEKQGEA 265 (442)
T ss_pred --------HHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCC---------CCCchhHhhHhhcceEEeeeeccccc
Confidence 77774 3356788999999999999999999999864 124458999999999987766443
Q ss_pred --CCCccceeecCeeeeeeCCCCC
Q psy10711 174 --CQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 174 --C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
--......-+|+.|+|++|+.+
T Consensus 266 ~~~~~~~i~~~~Fl~LtLDLP~~p 289 (442)
T KOG2026|consen 266 SENENKEISVMPFLYLTLDLPPPP 289 (442)
T ss_pred cccccceEEEEeeEEEEecCCCCC
Confidence 2223456789999999999976
No 33
>KOG1871|consensus
Probab=99.68 E-value=3.8e-17 Score=128.68 Aligned_cols=164 Identities=26% Similarity=0.260 Sum_probs=111.0
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCC------------
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS------------ 86 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~------------ 86 (203)
...|+|+.|-||.|||||+||+|..|++|.+.+.... ...... ...+.+++.++..+.........
T Consensus 25 ~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~-~~~~~~-~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~ 102 (420)
T KOG1871|consen 25 PIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIK-RADGTV-KEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP 102 (420)
T ss_pred ccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhh-hhcCce-ecccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence 4689999999999999999999999999999988776 111111 13445777777777766552221
Q ss_pred ----------------CcccCccchhhhhhhhHHHHHHhhh--hhcCCCCCCCcHHHHHHHHHHHHHHHHhh--------
Q psy10711 87 ----------------RYFSPQKFKVKHELVGKFKEEVGKM--KRTFRGYEQQDSHEFLTILIDTLHEDLKE-------- 140 (203)
Q Consensus 87 ----------------~~~~p~~~~~~~~~~~~~~~~l~~~--~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------- 140 (203)
.++.|..+ ...++.. ......|+|.||.||+..++|.||+|+..
T Consensus 103 ~~~~~~ses~~~d~~~dav~~d~~----------~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~ 172 (420)
T KOG1871|consen 103 EHVVEKSESNKSDLQGDAVKPDPI----------YLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPP 172 (420)
T ss_pred ccccchhhhhhhcccCccccCCch----------hhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCC
Confidence 12333333 2222211 11223599999999999999999999832
Q ss_pred --------------------------hhHHhHHH-----------HhhcCCCccccccceeeeeEEEcCCCCCccceeec
Q psy10711 141 --------------------------SGEKSWGE-----------FRKKNKSIISELFYGQLKSTVICCNCQETSSTFEV 183 (203)
Q Consensus 141 --------------------------~~~~~~~~-----------~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~ 183 (203)
....+|.. ......+++.++|+|.+++.+.= .-.+++...+|
T Consensus 173 n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~-~~nkeS~tlqP 251 (420)
T KOG1871|consen 173 NDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQ-PSNKESATLQP 251 (420)
T ss_pred cccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceec-cccccccccCc
Confidence 00011111 11123467899999999999884 44566799999
Q ss_pred CeeeeeeCCCCC
Q psy10711 184 FSNVSLPLPSND 195 (203)
Q Consensus 184 f~~LsL~i~~~~ 195 (203)
|..|+|+|-..+
T Consensus 252 F~tlqldiq~~~ 263 (420)
T KOG1871|consen 252 FFTLQLDIQSEK 263 (420)
T ss_pred cceeeeeeeccc
Confidence 999999996655
No 34
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.46 E-value=8.2e-15 Score=114.58 Aligned_cols=101 Identities=24% Similarity=0.398 Sum_probs=77.4
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhh
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~ 98 (203)
..+++||.|.|.|||+||+||+|+++|+||+. +.+.... .....++++++..|| ..+
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~-~~~~~~~-----~~~~~~l~~el~~lf-------------s~~---- 68 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNF-TAIILVA-----CPKESCLLCELGYLF-------------STL---- 68 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHH-HHhhccc-----CCcCccHHHHHHHHH-------------HHH----
Confidence 34689999999999999999999999999998 3332221 233479999999999 111
Q ss_pred hhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCcc
Q psy10711 99 ELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETS 178 (203)
Q Consensus 99 ~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s 178 (203)
.+-|-.+|++.+..+.... . ..|++++
T Consensus 69 ------------------------iq~F~~fll~~i~~~~~~~--------------~---------------~~C~~~s 95 (268)
T cd02672 69 ------------------------IQNFTRFLLETISQDQLGT--------------P---------------FSCGTSR 95 (268)
T ss_pred ------------------------HHHHHHHHHHHHHHHhccc--------------C---------------CCCCcee
Confidence 1457788888888654310 0 6799999
Q ss_pred ceeecCeeeeeeCCCCC
Q psy10711 179 STFEVFSNVSLPLPSND 195 (203)
Q Consensus 179 ~~~e~f~~LsL~i~~~~ 195 (203)
.+.+++++|+|++|...
T Consensus 96 ~~~~~~~~LsLpip~~~ 112 (268)
T cd02672 96 NSVSLLYTLSLPLGSTK 112 (268)
T ss_pred eccccceeeeeecCccc
Confidence 99999999999999753
No 35
>KOG1872|consensus
Probab=99.45 E-value=1.8e-14 Score=116.36 Aligned_cols=157 Identities=22% Similarity=0.286 Sum_probs=119.8
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhh
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~ 97 (203)
.+.++|+.|+|||||||+.+|+|...|+++..+-... ....... -.....+..+++.+|+.+..+ .++.|..+
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t-~~~a~~i~~~mR~~f~~~~~~--~~v~pi~l--- 175 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDT-WERRRRISIETRTCFRPLCEK--GAVAPINL--- 175 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCch-hhhhhhHHHHHHHHHHhhhcc--CCcchHHH---
Confidence 4567899999999999999999999999998887765 2222111 111357888999999999988 78888888
Q ss_pred hhhhhHHHHHHhhhhhcCCC------CCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEc
Q psy10711 98 HELVGKFKEEVGKMKRTFRG------YEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVIC 171 (203)
Q Consensus 98 ~~~~~~~~~~l~~~~~~f~~------~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C 171 (203)
...+.+..|.|.. +.||||.|++..++..++..+....... .....+...|++.+..+..|
T Consensus 176 -------lqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~------~~~~~~d~~f~~~~~~t~~~ 242 (473)
T KOG1872|consen 176 -------LQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP------CLEAEAAAGFGAEFSTTMSC 242 (473)
T ss_pred -------HHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc------chhHHHHHhhccccccceee
Confidence 7777777777654 8899999999999999998775321111 23346788999999999999
Q ss_pred CCCCCccce--eecCeeeeeeCCCC
Q psy10711 172 CNCQETSST--FEVFSNVSLPLPSN 194 (203)
Q Consensus 172 ~~C~~~s~~--~e~f~~LsL~i~~~ 194 (203)
.+-...... .|.|+.|+..+-..
T Consensus 243 ~e~e~~~~~~~~E~~~~L~c~i~~~ 267 (473)
T KOG1872|consen 243 SEGEDEGGGAGRELVDQLKCIINKT 267 (473)
T ss_pred ccCcccccccccccccccceEEeee
Confidence 887766544 78888888776543
No 36
>KOG4598|consensus
Probab=99.44 E-value=1.4e-14 Score=121.69 Aligned_cols=125 Identities=18% Similarity=0.317 Sum_probs=100.7
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhh
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~ 98 (203)
+.+.+||.|..-|||+|+.+|+|+..|+|++.++... ..++....+
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~------------------------------~~~~et~dl---- 129 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE------------------------------NDSLETKDL---- 129 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC------------------------------cccccchhh----
Confidence 6788999999999999999999999999999886432 223333444
Q ss_pred hhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCcc
Q psy10711 99 ELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETS 178 (203)
Q Consensus 99 ~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s 178 (203)
.+.+++- .-..++|||.+|.-+..+|+|+...+.. +....|+++++|++...+.|.+|+.++
T Consensus 130 ------t~sfgw~--s~ea~~qhdiqelcr~mfdalehk~k~t----------~~~~li~~ly~g~m~d~v~cl~c~~e~ 191 (1203)
T KOG4598|consen 130 ------TQSFGWT--SNEAYDQHDVQELCRLMFDALEHKWKGT----------EHEKLIQDLYRGTMEDFVACLKCGRES 191 (1203)
T ss_pred ------HhhcCCC--cchhhhhhhHHHHHHHHHHHHHhhhcCc----------hHHHHHHHHhcchHHHHHHHHHcCccc
Confidence 3333322 1224789999999999999999877632 344589999999999999999999999
Q ss_pred ceeecCeeeeeeCCCCC
Q psy10711 179 STFEVFSNVSLPLPSND 195 (203)
Q Consensus 179 ~~~e~f~~LsL~i~~~~ 195 (203)
++.+.|++|+|+|++-+
T Consensus 192 ~~~d~fld~pl~v~pfg 208 (1203)
T KOG4598|consen 192 VKTDYFLDLPLAVKPFG 208 (1203)
T ss_pred cccceeecccccccCCc
Confidence 99999999999998854
No 37
>KOG1864|consensus
Probab=99.14 E-value=3.1e-11 Score=102.84 Aligned_cols=163 Identities=24% Similarity=0.371 Sum_probs=117.6
Q ss_pred CCccCcccCCcccchh--HHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCC--CcccCccch
Q psy10711 20 PGLTGLKNLGNTCYIN--SILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQKFK 95 (203)
Q Consensus 20 ~~~~GL~N~GntCy~N--s~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~~~~p~~~~ 95 (203)
...-|..|.+++|+-| ++.|.+..+..++............. ......+...+..++........ ..+.|..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~- 306 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRS--YIIKEELLTCLLDLFSSISSRKKLVGRISPTRF- 306 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccch--hhhhHHHHHHhhhhccchhhhcccccccCcchh-
Confidence 4567899999999999 99999999988886555543111110 11223444444444443332221 25677777
Q ss_pred hhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhH-----------HhHH-----------HHhhcC
Q psy10711 96 VKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGE-----------KSWG-----------EFRKKN 153 (203)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~-----------~~~~-----------~~~~~~ 153 (203)
...+++....|..+.|||||||+.++++.+++-...... ++.. ......
T Consensus 307 ---------~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~ 377 (587)
T KOG1864|consen 307 ---------ISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLR 377 (587)
T ss_pred ---------hhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccc
Confidence 899999999999999999999999999999987643110 0100 011224
Q ss_pred CCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCC
Q psy10711 154 KSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN 194 (203)
Q Consensus 154 ~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~ 194 (203)
..+++.+|.|.+.....|..|...+.+.+.|.+++++++.+
T Consensus 378 ~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d 418 (587)
T KOG1864|consen 378 ENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEID 418 (587)
T ss_pred hhHHHHhhcCeeeeeeeeccccccccccccccccceecccc
Confidence 56899999999999999999999999999999999999954
No 38
>KOG1275|consensus
Probab=98.77 E-value=4.3e-09 Score=91.34 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=107.2
Q ss_pred CCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhhh
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHE 99 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~ 99 (203)
..++||.-.+-+-|.||+||.|+.+|++|..++++. .....|++|+|.-||.+|..+.+.......|
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~--------C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NF----- 563 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI--------CTKEFCLLCELGFLFTMLDSSTGDPCQANNF----- 563 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc--------cchhHHHHHHHHHHHHHHhhhcCCccchhHH-----
Confidence 457888888989999999999999999999999984 2334799999999999999999998888888
Q ss_pred hhhHHHHHHhhhhhcCC-----C-----------CCCCcHHHHHHHHHHHHHHHHhh-----hhHHhHHHHhhcCCCccc
Q psy10711 100 LVGKFKEEVGKMKRTFR-----G-----------YEQQDSHEFLTILIDTLHEDLKE-----SGEKSWGEFRKKNKSIIS 158 (203)
Q Consensus 100 ~~~~~~~~l~~~~~~f~-----~-----------~~QqDA~Efl~~ll~~l~~e~~~-----~~~~~~~~~~~~~~~~i~ 158 (203)
+++++.....-. . .--|||.-|.....+...+-.+- ................+.
T Consensus 564 -----lraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~ 638 (1118)
T KOG1275|consen 564 -----LRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQ 638 (1118)
T ss_pred -----HHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHH
Confidence 555543321111 0 11123333322222221111100 000000111223345789
Q ss_pred cccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 159 ELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 159 ~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
+.|+..++....|-.|+..+.+......+.|..|+..
T Consensus 639 q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~ 675 (1118)
T KOG1275|consen 639 QSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVL 675 (1118)
T ss_pred HHhhhHHHHhhhcccccchhhhhhhhhheeecCCCcc
Confidence 9999999999999999999887778888888888765
No 39
>KOG1864|consensus
Probab=98.49 E-value=2.3e-07 Score=79.52 Aligned_cols=121 Identities=25% Similarity=0.282 Sum_probs=66.5
Q ss_pred cccccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhh---ccccccC---CCCc-----hHHHHHHHHHHHHH
Q psy10711 13 IIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFK---RSMTAAY---SKTS-----GKLAEEFQLIFNML 81 (203)
Q Consensus 13 p~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~---~~~~~~~---~~~~-----~~~~~~l~~l~~~l 81 (203)
|.+......+. |.|.||+||.||+||++.++|+|+..+..... ....... .... .....+....+...
T Consensus 23 ~e~~~~~~~~~-l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (587)
T KOG1864|consen 23 PEYGHELFKFR-LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN 101 (587)
T ss_pred ccccccccceE-EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc
Confidence 33333344445 99999999999999999999999998877661 1111100 0000 11111111111111
Q ss_pred hcCCCCcccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy10711 82 WAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE 140 (203)
Q Consensus 82 ~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~ 140 (203)
........+. .+.+... +....+....|....|+||++++.-++..+.+.+..
T Consensus 102 ----~~~~~~~~~s-~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 102 ----SSSNESFNLS-VTQLVQS-RLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred ----CCccccccch-HHHHHHH-HhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 1111111111 1111111 112233345688899999999999999999988753
No 40
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.29 E-value=3e-07 Score=70.82 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCC-Cee
Q psy10711 119 EQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN-DYC 197 (203)
Q Consensus 119 ~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~-~~~ 197 (203)
+|||+.||+..|+++++.-+.. +.-++|.|-....-. . +...|.++.|+++.+.. +..
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~---------------~~~~~~~~g~~~~~~---~---~~~~e~~l~l~ip~~~~~~~~ 80 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE---------------PKVDIIHGGKKDQDD---D---KLVNERLLQIPVPDDDDGGGI 80 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh---------------HHHHHHhcCcccccc---c---cccccceEEeecccCCCCCcC
Confidence 5999999999999999864431 233455543222111 1 45567777777776554 467
Q ss_pred eEEEeC
Q psy10711 198 SLRVSF 203 (203)
Q Consensus 198 ~L~~~~ 203 (203)
+|+.||
T Consensus 81 tLedcL 86 (241)
T cd02670 81 TLEQCL 86 (241)
T ss_pred CHHHHH
Confidence 777664
No 41
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=96.05 E-value=0.0027 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.688 Sum_probs=16.3
Q ss_pred CccCcccCCcccchhHHHHHHhC
Q psy10711 21 GLTGLKNLGNTCYINSILQCLSN 43 (203)
Q Consensus 21 ~~~GL~N~GntCy~Ns~LQ~L~~ 43 (203)
.+.|+.|.+|+||+||++|.+..
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHHH
Confidence 45799999999999999999843
No 42
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=92.12 E-value=1.1 Score=34.65 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=25.7
Q ss_pred ccCCcccchhHHHHHHhCCHhHHHHHHh
Q psy10711 26 KNLGNTCYINSILQCLSNTSPLREYFVT 53 (203)
Q Consensus 26 ~N~GntCy~Ns~LQ~L~~~~~f~~~l~~ 53 (203)
.|.-|-||+-++|-+|.|+..+++.+-.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~ 33 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTE 33 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888999999999999999999998865
No 43
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=90.98 E-value=0.48 Score=38.18 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=40.2
Q ss_pred CCccCcccCCcccchhHHHHHHhCCHh-HHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhh
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSNTSP-LREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~-f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~ 98 (203)
.|.+=|.=.-|+||+||++=+|-+... |+.. .+..++..+..+ +|..|
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~----------------------~l~~aw~~f~~G-----~~~~f---- 148 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKSP----------------------GLDEAWNEFKAG-----DPAPF---- 148 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSSH----------------------HHHHHHHHHHTT-------HHH----
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCCH----------------------HHHHHHHHHhCC-----ChHHH----
Confidence 455556666899999999877755432 2221 233344444333 24444
Q ss_pred hhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHH
Q psy10711 99 ELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHE 136 (203)
Q Consensus 99 ~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~ 136 (203)
...+-. ......|+--||+++|..|++.++.
T Consensus 149 ------Va~~Ya-~~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 149 ------VAWCYA-STNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp ------HHHHHH-HTT--TTS---HHHHHHHHHTTB-T
T ss_pred ------HHHHHH-HcCCCCCCCcCHHHHHHHHHHhccc
Confidence 332221 2344568999999999999987764
No 44
>KOG1871|consensus
Probab=88.25 E-value=0.36 Score=39.48 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=71.9
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCC-------cccC
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR-------YFSP 91 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-------~~~p 91 (203)
...++|+.|.||-|..+|..|...+..++...+-........+.......++..-|.-.+..--..... +..|
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~t 254 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFT 254 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccce
Confidence 456899999999999999999999999999888777655555543333344444444333322221111 2223
Q ss_pred ccchhhhhhhhHHHHHHhhhhh-----cC--------CCCCCCcHHHHHHHHHHHHHHHHh
Q psy10711 92 QKFKVKHELVGKFKEEVGKMKR-----TF--------RGYEQQDSHEFLTILIDTLHEDLK 139 (203)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~-----~f--------~~~~QqDA~Efl~~ll~~l~~e~~ 139 (203)
..|...-..+.-...++....+ .+ ....|-|++++...|+..++...-
T Consensus 255 lqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~y 315 (420)
T KOG1871|consen 255 LQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVY 315 (420)
T ss_pred eeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHH
Confidence 3332211111111222222211 11 135788999999999999998873
No 45
>KOG3556|consensus
Probab=75.66 E-value=3.7 Score=35.20 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCCccCcccCCcccchhHHHHHHhCC
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNT 44 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~ 44 (203)
.....|++-.-|.||+||.|=+++.-
T Consensus 365 ~gk~kgiqgh~nscyldstlf~~f~f 390 (724)
T KOG3556|consen 365 EGKIKGIQGHPNSCYLDSTLFKPFEF 390 (724)
T ss_pred hcccccccCCcchhhccccccccccc
Confidence 34567889899999999999887653
No 46
>KOG1867|consensus
Probab=68.23 E-value=3.5 Score=35.45 Aligned_cols=42 Identities=14% Similarity=-0.108 Sum_probs=33.2
Q ss_pred ccccccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHh
Q psy10711 12 KIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVT 53 (203)
Q Consensus 12 ~p~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~ 53 (203)
.+...+......|..+.+|+|+||+.+|.++.++.|.-....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~ 108 (492)
T KOG1867|consen 67 GCLSNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAEL 108 (492)
T ss_pred ccccccccccccccccccccceeehhhheeccCCcEeeccch
Confidence 344445566789999999999999999999999987654433
No 47
>PF12653 DUF3785: Protein of unknown function (DUF3785); InterPro: IPR024210 This family of proteins is functionally uncharacterised. Proteins in this family are approximately 140 amino acids in length and share two CXXC motifs suggesting these are zinc binding proteins. In clostridia proteins are found in an operon with three signalling proteins, suggesting that they are involved in DNA-binding transcription regulator downstream of an as yet unknown signalling pathway.
Probab=42.19 E-value=24 Score=24.29 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=17.2
Q ss_pred eeeeEEEcCCCCCccceeecC
Q psy10711 164 QLKSTVICCNCQETSSTFEVF 184 (203)
Q Consensus 164 ~~~~~~~C~~C~~~s~~~e~f 184 (203)
.+.+.++|.+||..+...|.+
T Consensus 116 YiVsi~VC~nCG~y~i~IE~c 136 (138)
T PF12653_consen 116 YIVSIIVCPNCGNYSIEIENC 136 (138)
T ss_pred eEEEEEECCCCCceEEEEEEe
Confidence 467889999999988877654
No 48
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=37.95 E-value=28 Score=26.04 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.7
Q ss_pred ccceeeeeEEEcCCCCCcc
Q psy10711 160 LFYGQLKSTVICCNCQETS 178 (203)
Q Consensus 160 ~F~g~~~~~~~C~~C~~~s 178 (203)
.|+-.+.+...|.+||..+
T Consensus 35 yFG~V~i~t~~C~~CgYR~ 53 (201)
T COG1779 35 YFGEVLISTGVCERCGYRS 53 (201)
T ss_pred ccceEEEEEEEccccCCcc
Confidence 6888889999999999875
No 49
>KOG1873|consensus
Probab=35.29 E-value=16 Score=33.01 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=36.4
Q ss_pred cCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 152 KNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 152 ~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
....++...|.|...+.+.|..|. ++.+.+.|.+.+++|-...
T Consensus 361 ~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~ 403 (877)
T KOG1873|consen 361 DLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQ 403 (877)
T ss_pred cCCcccccccCCCcccchhhhccc-eeccchhhcccccccccCc
Confidence 444556699999999999999999 7788999999999987653
No 50
>PF14855 PapJ: Pilus-assembly fibrillin subunit, chaperone
Probab=32.51 E-value=17 Score=26.20 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=11.2
Q ss_pred CCcccchhHHHHH
Q psy10711 28 LGNTCYINSILQC 40 (203)
Q Consensus 28 ~GntCy~Ns~LQ~ 40 (203)
+--+|+||+++|+
T Consensus 13 ll~S~smn~vlqA 25 (187)
T PF14855_consen 13 LLVSCSMNSVLQA 25 (187)
T ss_pred Hhhcchhhhhhhh
Confidence 4568999999998
No 51
>KOG1868|consensus
Probab=29.81 E-value=18 Score=32.33 Aligned_cols=15 Identities=67% Similarity=1.296 Sum_probs=14.2
Q ss_pred cccCCcccchhHHHH
Q psy10711 25 LKNLGNTCYINSILQ 39 (203)
Q Consensus 25 L~N~GntCy~Ns~LQ 39 (203)
+.|+||+||+|+++|
T Consensus 205 ~~~l~~~~~~~~~~~ 219 (653)
T KOG1868|consen 205 VPNLGNTCYMNAVLQ 219 (653)
T ss_pred cchhhchhcccchhh
Confidence 789999999999997
No 52
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=29.74 E-value=53 Score=21.68 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=23.1
Q ss_pred CCccccccceeeee---------EEEcCCCCCccceeecCeeeeee
Q psy10711 154 KSIISELFYGQLKS---------TVICCNCQETSSTFEVFSNVSLP 190 (203)
Q Consensus 154 ~~~i~~~F~g~~~~---------~~~C~~C~~~s~~~e~f~~LsL~ 190 (203)
.+++.-.|.|...- ++.|..||....+.-+-++-.+|
T Consensus 19 pt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y~~~~V~~l~epID 64 (99)
T PRK14892 19 PKIFECPRCGKVSISVKIKKNIAIITCGNCGLYTEFEVPSVYDEVD 64 (99)
T ss_pred CcEeECCCCCCeEeeeecCCCcceEECCCCCCccCEECCccccchh
Confidence 45666777774333 88999999886654444433333
No 53
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=28.99 E-value=45 Score=20.20 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=12.5
Q ss_pred eEEEcCCCCCccceee
Q psy10711 167 STVICCNCQETSSTFE 182 (203)
Q Consensus 167 ~~~~C~~C~~~s~~~e 182 (203)
-.++|.+|+++...+.
T Consensus 18 l~VkCpdC~N~q~vFs 33 (67)
T COG2051 18 LRVKCPDCGNEQVVFS 33 (67)
T ss_pred EEEECCCCCCEEEEec
Confidence 4689999999876654
No 54
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=28.54 E-value=80 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=20.0
Q ss_pred ccchhHHHHHHhCCHhHHHHHHhhh
Q psy10711 31 TCYINSILQCLSNTSPLREYFVTEF 55 (203)
Q Consensus 31 tCy~Ns~LQ~L~~~~~f~~~l~~~~ 55 (203)
.=||..++|++...|.+++++.+..
T Consensus 110 ~LfmRTviq~~~~~p~L~~FV~~iL 134 (183)
T PF12295_consen 110 LLFMRTVIQALQKYPSLRSFVSNIL 134 (183)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3478999999999999998887543
No 55
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=27.17 E-value=1.5e+02 Score=18.75 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCcccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHH
Q psy10711 68 GKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHED 137 (203)
Q Consensus 68 ~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e 137 (203)
.++...+...+.+|.... .++.-..+ ++.+.+.+|... -=.+|-+..-|..|-.+
T Consensus 10 iPL~EvlC~~I~dln~~~-~~at~E~l----------~~~L~~~yp~i~----~Ps~e~l~~~L~~Li~e 64 (80)
T PF10264_consen 10 IPLPEVLCWVISDLNAAG-QPATQETL----------REHLRKHYPGIA----IPSQEVLYNTLGTLIKE 64 (80)
T ss_pred eeHHHHHHHHHHHHhccC-CcchHHHH----------HHHHHHhCCCCC----CCCHHHHHHHHHHHHHc
Confidence 468888888999997765 55566666 788877777654 34456666666666554
No 56
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.06 E-value=1.1e+02 Score=16.38 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=12.2
Q ss_pred eEEEcCCCCCccceeecCee
Q psy10711 167 STVICCNCQETSSTFEVFSN 186 (203)
Q Consensus 167 ~~~~C~~C~~~s~~~e~f~~ 186 (203)
...+|.+||+......+..+
T Consensus 4 Yey~C~~Cg~~fe~~~~~~~ 23 (42)
T PF09723_consen 4 YEYRCEECGHEFEVLQSISE 23 (42)
T ss_pred EEEEeCCCCCEEEEEEEcCC
Confidence 35677777776655555444
No 57
>KOG2757|consensus
Probab=24.82 E-value=2.8e+02 Score=23.15 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=39.3
Q ss_pred CccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCC
Q psy10711 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR 87 (203)
Q Consensus 21 ~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 87 (203)
+++|++-. --+.|.|-.+|+|+..+-+.....+....+.........++.+|..++.....
T Consensus 139 ~LcGFrp~------~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~~~ 199 (411)
T KOG2757|consen 139 ALCGFRPL------EEIKQFLDTIPELRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRLMKAEEN 199 (411)
T ss_pred hhhCccCH------HHHHHHHHhChHHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHHhcCchh
Confidence 55666543 35788999999999988765522222211112345677888999999887644
No 58
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=24.55 E-value=64 Score=19.08 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=12.7
Q ss_pred eEEEcCCCCCccceeec
Q psy10711 167 STVICCNCQETSSTFEV 183 (203)
Q Consensus 167 ~~~~C~~C~~~s~~~e~ 183 (203)
-.++|.+|+++...++.
T Consensus 10 ~~VkCp~C~n~q~vFsh 26 (59)
T PRK00415 10 LKVKCPDCGNEQVVFSH 26 (59)
T ss_pred EEEECCCCCCeEEEEec
Confidence 46899999998765543
No 59
>KOG1290|consensus
Probab=24.46 E-value=2.7e+02 Score=24.47 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q psy10711 118 YEQQDSHEFLTILIDTLHE 136 (203)
Q Consensus 118 ~~QqDA~Efl~~ll~~l~~ 136 (203)
..++||.||-.+|+--|+-
T Consensus 518 ~s~e~A~~fsdFL~PmLef 536 (590)
T KOG1290|consen 518 WSEEDAQQFSDFLSPMLEF 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 5688999998888877763
No 60
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=24.31 E-value=29 Score=18.71 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=10.3
Q ss_pred eEEEcCCCCCccce
Q psy10711 167 STVICCNCQETSST 180 (203)
Q Consensus 167 ~~~~C~~C~~~s~~ 180 (203)
..++|..||.....
T Consensus 12 ~~~~C~~CgM~Y~~ 25 (41)
T PF13878_consen 12 GATTCPTCGMLYSP 25 (41)
T ss_pred CCcCCCCCCCEECC
Confidence 35799999987543
No 61
>PHA00689 hypothetical protein
Probab=23.76 E-value=44 Score=18.83 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=12.8
Q ss_pred eEEEcCCCCCccceeec
Q psy10711 167 STVICCNCQETSSTFEV 183 (203)
Q Consensus 167 ~~~~C~~C~~~s~~~e~ 183 (203)
..++|..||+...+.|.
T Consensus 16 ravtckrcgktglrwed 32 (62)
T PHA00689 16 RAVTCKRCGKTGLRWED 32 (62)
T ss_pred ceeehhhccccCceeec
Confidence 35789999998776553
No 62
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.34 E-value=33 Score=16.33 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=6.4
Q ss_pred EEcCCCCCc
Q psy10711 169 VICCNCQET 177 (203)
Q Consensus 169 ~~C~~C~~~ 177 (203)
+.|.+||..
T Consensus 3 ~~Cp~Cg~~ 11 (26)
T PF13248_consen 3 MFCPNCGAE 11 (26)
T ss_pred CCCcccCCc
Confidence 567788774
No 63
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=21.43 E-value=29 Score=17.65 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=12.0
Q ss_pred ccCcccCCcccchhHH
Q psy10711 22 LTGLKNLGNTCYINSI 37 (203)
Q Consensus 22 ~~GL~N~GntCy~Ns~ 37 (203)
..=+.|..|-|+-|=+
T Consensus 17 rilidnfsnfc~ynfi 32 (37)
T PF08199_consen 17 RILIDNFSNFCHYNFI 32 (37)
T ss_pred HHhhhccccceeeeee
Confidence 3457899999998843
No 64
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.24 E-value=66 Score=16.71 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=7.9
Q ss_pred EEEcCCCCCc
Q psy10711 168 TVICCNCQET 177 (203)
Q Consensus 168 ~~~C~~C~~~ 177 (203)
.++|..|+++
T Consensus 25 ~v~C~~C~~~ 34 (36)
T PF13717_consen 25 KVRCSKCGHV 34 (36)
T ss_pred EEECCCCCCE
Confidence 5788888875
No 65
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=20.81 E-value=1.1e+02 Score=17.61 Aligned_cols=49 Identities=12% Similarity=0.340 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCcccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHH
Q psy10711 74 FQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLH 135 (203)
Q Consensus 74 l~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~ 135 (203)
++.+|..+.......++..++ ...+........ ++...+.+..++..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~D 50 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEEL----------RRALKHLGRDMS---DEESDEMIDQIFREFD 50 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHH----------HHHHHHTTSHST---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCccCCCCHHHH----------HHHHHHhccccc---HHHHHHHHHHHHHHhC
Confidence 567778887777778888888 666654433221 3444454444444443
No 66
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=20.57 E-value=2.3e+02 Score=21.41 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=13.0
Q ss_pred cccchhHHHHHHhCCHhHHHHHH
Q psy10711 30 NTCYINSILQCLSNTSPLREYFV 52 (203)
Q Consensus 30 ntCy~Ns~LQ~L~~~~~f~~~l~ 52 (203)
.|||=+++=.....-.+.+....
T Consensus 10 ~s~fG~sl~~L~~~~~p~~~~~~ 32 (220)
T cd04380 10 PSCFGSSLETLIRLPDPGIRNLI 32 (220)
T ss_pred cccccccHHHHhcCCchHhhccc
Confidence 35666666666655555555443
No 67
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.41 E-value=65 Score=18.68 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=10.5
Q ss_pred eeeEEEcCCCCCc
Q psy10711 165 LKSTVICCNCQET 177 (203)
Q Consensus 165 ~~~~~~C~~C~~~ 177 (203)
.-..++|.+|++.
T Consensus 31 aDIkikC~nC~h~ 43 (60)
T COG4481 31 ADIKIKCENCGHS 43 (60)
T ss_pred CcEEEEecCCCcE
Confidence 3467999999986
No 68
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=20.04 E-value=76 Score=19.09 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=15.1
Q ss_pred cccccccee--eeeEEEcCCCCCc
Q psy10711 156 IISELFYGQ--LKSTVICCNCQET 177 (203)
Q Consensus 156 ~i~~~F~g~--~~~~~~C~~C~~~ 177 (203)
.+.++|..+ ....++|.+||+.
T Consensus 22 ~~skiFdvq~~~f~~v~C~~CGYT 45 (64)
T PF09855_consen 22 GLSKIFDVQNKKFTTVSCTNCGYT 45 (64)
T ss_pred eeEEEEEecCcEEEEEECCCCCCE
Confidence 345556533 3467899999987
Done!