Query psy10711
Match_columns 203
No_of_seqs 189 out of 1133
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 16:41:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gfo_A Ubiquitin carboxyl-term 100.0 8.4E-40 2.9E-44 268.2 12.2 183 10-202 50-253 (396)
2 2y6e_A Ubiquitin carboxyl-term 100.0 2.1E-39 7.2E-44 263.5 12.9 169 17-195 3-192 (367)
3 3nhe_A Ubiquitin carboxyl-term 100.0 6.7E-39 2.3E-43 258.4 13.8 176 16-202 3-201 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.7E-37 5.7E-42 250.8 11.6 164 20-195 1-200 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 9E-36 3.1E-40 244.9 9.4 166 19-195 11-193 (404)
6 1nb8_A Ubiquitin carboxyl-term 100.0 6.4E-35 2.2E-39 236.0 13.7 151 17-195 1-151 (353)
7 1vjv_A Ubiquitin carboxyl-term 100.0 3.9E-34 1.3E-38 236.0 11.6 154 17-195 19-185 (415)
8 3ihp_A Ubiquitin carboxyl-term 100.0 7.6E-34 2.6E-38 250.6 13.5 154 18-194 340-513 (854)
9 3mhs_A Ubiquitin carboxyl-term 100.0 2E-33 6.9E-38 235.4 13.3 171 17-195 136-319 (476)
10 2f1z_A Ubiquitin carboxyl-term 100.0 1.2E-32 4.2E-37 233.0 13.5 151 17-195 170-320 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.8 8.1E-20 2.8E-24 144.8 4.4 102 20-137 7-114 (374)
12 1qmy_A Protease, leader protea 92.4 0.043 1.5E-06 37.3 1.2 24 20-43 11-34 (167)
13 3mp2_A Non-structural protein 86.9 0.7 2.4E-05 33.8 4.0 75 18-134 9-83 (211)
14 2fe8_A PP1AB, ORF1AB, replicas 71.9 5.1 0.00018 31.2 4.6 77 20-134 100-177 (315)
15 2p09_A A non-biological ATP bi 67.3 0.84 2.9E-05 26.2 -0.5 33 5-37 24-56 (81)
16 2oqp_A Interleukin-21, IL-21, 41.5 69 0.0023 21.5 5.3 93 39-138 13-120 (134)
17 2l1q_A Liver-expressed antimic 34.8 19 0.00066 18.5 1.4 20 12-36 2-21 (40)
18 3c5t_B Exendin-4, exenatide; l 31.5 21 0.00073 17.4 1.2 12 122-133 10-21 (31)
19 1t5q_A Gastric inhibitory poly 23.7 50 0.0017 15.9 1.7 13 120-132 16-28 (30)
20 1kdl_A YOPD protein; yersinia, 22.8 39 0.0013 15.5 1.1 9 33-41 3-11 (26)
21 1xv3_A Penaeidin-4D, PEN-4D; a 21.7 60 0.002 17.3 1.9 23 20-42 13-36 (47)
22 2g49_C Glucagon preproprotein; 21.2 19 0.00065 17.3 -0.1 13 120-132 16-28 (29)
23 3j20_W 30S ribosomal protein S 20.0 57 0.0019 18.8 1.7 17 167-183 14-30 (63)
No 1
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=8.4e-40 Score=268.24 Aligned_cols=183 Identities=47% Similarity=0.859 Sum_probs=155.0
Q ss_pred ccccccccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hcccccc-CCCCchHHHHHHHHHHHHHhcCCCC
Q psy10711 10 RIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAGDSR 87 (203)
Q Consensus 10 ~~~p~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~ 87 (203)
.+.|.+...+++++||.|+||||||||+||+|+++|+|+++++... ...+... ......+++.++..++..||.+...
T Consensus 50 ~l~p~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 129 (396)
T 2gfo_A 50 NLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYR 129 (396)
T ss_dssp GGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEE
T ss_pred ccCCccCCCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCc
Confidence 3456776678899999999999999999999999999999998864 2222211 1123457899999999999999888
Q ss_pred cccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh-------------------hhHHhHHH
Q psy10711 88 YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE-------------------SGEKSWGE 148 (203)
Q Consensus 88 ~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------------------~~~~~~~~ 148 (203)
.++|..| +.+++...+.|.+++|||||||+.+|||.|++++.. .+...|..
T Consensus 130 ~i~P~~f----------~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~ 199 (396)
T 2gfo_A 130 YISPKDF----------KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQK 199 (396)
T ss_dssp EECCHHH----------HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHH
T ss_pred eECHHHH----------HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHH
Confidence 9999999 999999999999999999999999999999999742 23345666
Q ss_pred HhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCCeeeEEEe
Q psy10711 149 FRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVS 202 (203)
Q Consensus 149 ~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~L~~~ 202 (203)
......++|.++|+|.+.+.++|..|++++.+.|+|++|+|+||.....+|+.|
T Consensus 200 ~~~~~~s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~ 253 (396)
T 2gfo_A 200 HKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDC 253 (396)
T ss_dssp HHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHH
T ss_pred hhhccCCccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHH
Confidence 666778999999999999999999999999999999999999999877777654
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=263.52 Aligned_cols=169 Identities=41% Similarity=0.822 Sum_probs=144.2
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhh-hcccccc-CCCCchHHHHHHHHHHHHHhcCCCCcccCccc
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKF 94 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~-~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~ 94 (203)
+..+|++||.|+||||||||+||+|+++|+|+++++... ...+... ......+++.+++.|+..||.+....++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 457899999999999999999999999999999999865 2222111 12234689999999999999988889999999
Q ss_pred hhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh-------------------hhHHhHHHHhhcCCC
Q psy10711 95 KVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE-------------------SGEKSWGEFRKKNKS 155 (203)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------------------~~~~~~~~~~~~~~~ 155 (203)
+.+++...+.|.+++|||||||+.+|||.|++++.. .+.+.|........+
T Consensus 83 ----------~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s 152 (367)
T 2y6e_A 83 ----------KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDS 152 (367)
T ss_dssp ----------HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCS
T ss_pred ----------HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999742 234556666667889
Q ss_pred ccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 156 IISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 156 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
+|.++|+|.+.+.++|..|++++.+.|+|++|+|+||...
T Consensus 153 ~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~ 192 (367)
T 2y6e_A 153 VIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKK 192 (367)
T ss_dssp HHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC--
T ss_pred ccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCc
Confidence 9999999999999999999999999999999999999754
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=6.7e-39 Score=258.38 Aligned_cols=176 Identities=38% Similarity=0.734 Sum_probs=148.6
Q ss_pred ccCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhh-ccccccCCCCchHHHHHHHHHHHHHh-cCCCCcccCcc
Q psy10711 16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFK-RSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQK 93 (203)
Q Consensus 16 ~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~p~~ 93 (203)
.++.+|++||.|+||||||||+||+|+++|+||++++.... ..... ......+++++++.++..++ .+....++|..
T Consensus 3 sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH-GSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ---CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS-SCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhcc-CCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 35688999999999999999999999999999999988652 22222 13456789999999999999 56667999999
Q ss_pred chhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhh-------------------hhHHhHHHHhhcCC
Q psy10711 94 FKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE-------------------SGEKSWGEFRKKNK 154 (203)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~-------------------~~~~~~~~~~~~~~ 154 (203)
+ ++.++...+.|.+++|||||||+.+||+.|++++.. .+...|........
T Consensus 82 ~----------~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (348)
T 3nhe_A 82 F----------KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED 151 (348)
T ss_dssp H----------HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCC
T ss_pred H----------HHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcC
Confidence 9 999999999999999999999999999999999742 23455666677778
Q ss_pred CccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC--eeeEEEe
Q psy10711 155 SIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND--YCSLRVS 202 (203)
Q Consensus 155 ~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~--~~~L~~~ 202 (203)
+++.++|+|.+.+.++|..|++.+.+.|+|++|+|+||... ..+|+.|
T Consensus 152 s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~ 201 (348)
T 3nhe_A 152 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDC 201 (348)
T ss_dssp CHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHH
T ss_pred CccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHH
Confidence 89999999999999999999999999999999999999865 4455443
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.7e-37 Score=250.84 Aligned_cols=164 Identities=38% Similarity=0.756 Sum_probs=136.2
Q ss_pred CCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhh-ccccccCCCCchHHHHHHHHHHHHHhcCCC-CcccCccchhh
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFK-RSMTAAYSKTSGKLAEEFQLIFNMLWAGDS-RYFSPQKFKVK 97 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~p~~~~~~ 97 (203)
.|++||.|+||||||||+||+|+++|+||+++++... ...+. .....++..+++.++..||.+.. ..++|..+
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~--- 75 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG--GGRAQELTEAFADVIGALWHPDSCEAVNPTRF--- 75 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSSCCCBCCHHH---
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC--CCchhHHHHHHHHHHHHHhcCCCCCcccHHHH---
Confidence 3789999999999999999999999999999988652 21111 23345899999999999998765 68999999
Q ss_pred hhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhh----------------------------------hH
Q psy10711 98 HELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKES----------------------------------GE 143 (203)
Q Consensus 98 ~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~----------------------------------~~ 143 (203)
+.+++...+.|.+++||||+||+.+||+.|++++... +.
T Consensus 76 -------~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T 3i3t_A 76 -------RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRAN 148 (355)
T ss_dssp -------HHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHH
T ss_pred -------HHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999999998431 22
Q ss_pred HhHHHHhhcCCCccccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCCC
Q psy10711 144 KSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 144 ~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 195 (203)
..|........++|.++|+|.+.+.++|..|++.+.+.|+|++|+|+||...
T Consensus 149 ~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~ 200 (355)
T 3i3t_A 149 LMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKG 200 (355)
T ss_dssp HHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC--
T ss_pred HHHHHhhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccc
Confidence 3455555667788999999999999999999999999999999999999853
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=9e-36 Score=244.85 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=132.2
Q ss_pred CCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhh
Q psy10711 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (203)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~ 98 (203)
..+++||.|+||||||||+||+|+++|+|+++++................+++++|+.||..|+.+. .+++|..|
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~---- 85 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIIL---- 85 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHH----
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHH----
Confidence 5688999999999999999999999999999999865221000012235689999999999999876 88999999
Q ss_pred hhhhHHHHHHhhhhhcCC------CCCCCcHHHHHHHHHHHHHHHHhhhh---------HHhHHHHhhcCCCccccccce
Q psy10711 99 ELVGKFKEEVGKMKRTFR------GYEQQDSHEFLTILIDTLHEDLKESG---------EKSWGEFRKKNKSIISELFYG 163 (203)
Q Consensus 99 ~~~~~~~~~l~~~~~~f~------~~~QqDA~Efl~~ll~~l~~e~~~~~---------~~~~~~~~~~~~~~i~~~F~g 163 (203)
+++++...+.|. +++|||||||+.+||+.|+++++... ...|........++|.++|+|
T Consensus 86 ------~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G 159 (404)
T 2ayn_A 86 ------LQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGV 159 (404)
T ss_dssp ------HHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCE
T ss_pred ------HHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccE
Confidence 999998888887 58999999999999999999885321 112222333456789999999
Q ss_pred eeeeEEEcCCCCCcc--ceeecCeeeeeeCCCCC
Q psy10711 164 QLKSTVICCNCQETS--STFEVFSNVSLPLPSND 195 (203)
Q Consensus 164 ~~~~~~~C~~C~~~s--~~~e~f~~LsL~i~~~~ 195 (203)
.+.+.++|..|++++ .+.|+|++|+|+|+...
T Consensus 160 ~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~ 193 (404)
T 2ayn_A 160 EFETTMKCTESEEEEVTKGKENQLQLSCFINQEV 193 (404)
T ss_dssp EEEEEEEESSSCCCCCBCCEEEESSEEEECSSSC
T ss_pred EEEEEEEecCCCCccCceeeccCceEEeecCCCc
Confidence 999999999999995 78999999999999753
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=6.4e-35 Score=236.01 Aligned_cols=151 Identities=26% Similarity=0.419 Sum_probs=127.6
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchh
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~ 96 (203)
++.+|++||.|+||||||||+||+|+++|+||++++...... .....++.++++.+|..|+.+. .++.|..+
T Consensus 1 k~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l-- 72 (353)
T 1nb8_A 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSD-KPVGTKKL-- 72 (353)
T ss_dssp CCCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-----SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHH--
T ss_pred CCCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-----CcccccHHHHHHHHHHHHhhcC-CCCCCHHH--
Confidence 357899999999999999999999999999999998753111 2233578999999999999876 56777777
Q ss_pred hhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCC
Q psy10711 97 KHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQE 176 (203)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 176 (203)
+..+. .+.|.+++|||||||+.+||+.|+++++.. ...++|.++|+|.+.+.++|..|++
T Consensus 73 --------~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~----------~~~s~i~~~F~g~~~~~i~C~~C~~ 132 (353)
T 1nb8_A 73 --------TKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT----------CVEGTIPKLFRGKMVSYIQCKEVDY 132 (353)
T ss_dssp --------HHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS----------TTTTHHHHHHCEEEEEEEEESSSCC
T ss_pred --------HhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC----------CccchhhhhceeEEEEEEEeccCCC
Confidence 66654 367889999999999999999999987531 2346899999999999999999999
Q ss_pred ccceeecCeeeeeeCCCCC
Q psy10711 177 TSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 177 ~s~~~e~f~~LsL~i~~~~ 195 (203)
.+.+.|+|++|+|+||+..
T Consensus 133 ~s~~~e~f~~LsL~i~~~~ 151 (353)
T 1nb8_A 133 RSDRREDYYDIQLSIKGKK 151 (353)
T ss_dssp EEEEEEEESCEEECCTTCS
T ss_pred eeceeeeeEEEEEEECCCc
Confidence 9999999999999999754
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=3.9e-34 Score=236.01 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=132.2
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCC----CCchHHHHHHHHHHHHHhcCCCCcccCc
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYS----KTSGKLAEEFQLIFNMLWAGDSRYFSPQ 92 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~l~~~~~~~~~p~ 92 (203)
+...+++||.|+||||||||+||+|+++|+||++++............ ....+++++|+.+|..|+.+...+++|.
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 346789999999999999999999999999999999875321111100 0145899999999999999888899999
Q ss_pred cchhhhhhhhHHHHHHhhhhhcCC-------CCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceee
Q psy10711 93 KFKVKHELVGKFKEEVGKMKRTFR-------GYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQL 165 (203)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~f~-------~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~ 165 (203)
.| +..++...+.|. +++||||+||+.+||+.|+++++. +++.++|+ .+
T Consensus 99 ~~----------~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~--------------~~i~~~F~-~~ 153 (415)
T 1vjv_A 99 VL----------LNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD--------------KFSEDFRI-QF 153 (415)
T ss_dssp HH----------HHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH--------------HHHTTTCE-EE
T ss_pred HH----------HHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc--------------chHHHHHH-hh
Confidence 99 999999888998 899999999999999999999852 57999999 99
Q ss_pred eeEEEcCCCCCcc--ceeecCeeeeeeCCCCC
Q psy10711 166 KSTVICCNCQETS--STFEVFSNVSLPLPSND 195 (203)
Q Consensus 166 ~~~~~C~~C~~~s--~~~e~f~~LsL~i~~~~ 195 (203)
.+.++|..|++++ .+.|+|++|+|+|+...
T Consensus 154 ~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~ 185 (415)
T 1vjv_A 154 KTTIKDTANDNDITVKENESDSKLQCHISGTT 185 (415)
T ss_dssp EEEEEETTEEEEEEEECCCEESCEEECCCTTC
T ss_pred eEEEEECCCCCCccccccccceeeeecccccc
Confidence 9999999999996 58999999999999763
No 8
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=250.65 Aligned_cols=154 Identities=26% Similarity=0.477 Sum_probs=132.9
Q ss_pred CCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCC------------
Q psy10711 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGD------------ 85 (203)
Q Consensus 18 ~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~------------ 85 (203)
.++|++||.|+||||||||+||+|+++|+||++++................++.++|++++..|+.+.
T Consensus 340 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~ 419 (854)
T 3ihp_A 340 FGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGE 419 (854)
T ss_dssp CSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC------------
T ss_pred cCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccc
Confidence 37899999999999999999999999999999998654221111223445689999999999999753
Q ss_pred --------CCcccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCcc
Q psy10711 86 --------SRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSII 157 (203)
Q Consensus 86 --------~~~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i 157 (203)
...++|..| +..++...+.|.+++||||+|||.+||+.|+++++ ..+.+
T Consensus 420 ~~~~~~~~~~~isP~~f----------~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~-------------~~s~i 476 (854)
T 3ihp_A 420 RVPEQKEVQDGIAPRMF----------KALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR-------------SSENP 476 (854)
T ss_dssp ---------CCBCCHHH----------HHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-------------TSCCG
T ss_pred cccccccCCCccChHHH----------HHHHhhhccccccccccCHHHHHHHHHHHHHHHhc-------------ccCCc
Confidence 347889988 99999999999999999999999999999999874 24679
Q ss_pred ccccceeeeeEEEcCCCCCccceeecCeeeeeeCCCC
Q psy10711 158 SELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN 194 (203)
Q Consensus 158 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~ 194 (203)
.++|+|.+.+.++|..|++++.+.++|++|+|+||..
T Consensus 477 ~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 477 NEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp GGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred hhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCcc
Confidence 9999999999999999999999999999999999964
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2e-33 Score=235.44 Aligned_cols=171 Identities=25% Similarity=0.423 Sum_probs=131.8
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCC---------
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR--------- 87 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--------- 87 (203)
.+++|++||.|+||||||||+||+|+++|+|+++++.......... .....++.+++..++..++.....
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~ 214 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKV-RSPDKCFSCALDKIVHELYGALNTKQASSSSTS 214 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSS-CCTTTCHHHHHHHHHHHHHSCCCC--------C
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccC-CCcccchHHHHHHHHHHHhhccccccccccccc
Confidence 4578999999999999999999999999999999997652221111 233467999999999999975433
Q ss_pred cccCccchhhhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHH---hHHHHhhcCCCcccccccee
Q psy10711 88 YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEK---SWGEFRKKNKSIISELFYGQ 164 (203)
Q Consensus 88 ~~~p~~~~~~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~---~~~~~~~~~~~~i~~~F~g~ 164 (203)
.+.|..+ ..++..++...+.|.+++||||+||+.+||+.|++++...... .+........++|.++|+|.
T Consensus 215 ~~~~~~~-------~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~ 287 (476)
T 3mhs_A 215 TNRQTGF-------IYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGS 287 (476)
T ss_dssp CCSCHHH-------HHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEE
T ss_pred ccCcchH-------HHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceE
Confidence 3344433 1224555688899999999999999999999999998643211 12222334567899999999
Q ss_pred eeeEEEcCCCCCccc-eeecCeeeeeeCCCCC
Q psy10711 165 LKSTVICCNCQETSS-TFEVFSNVSLPLPSND 195 (203)
Q Consensus 165 ~~~~~~C~~C~~~s~-~~e~f~~LsL~i~~~~ 195 (203)
+.+.++|..|+.++. +.|+|++|+|+||+..
T Consensus 288 l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~ 319 (476)
T 3mhs_A 288 LESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK 319 (476)
T ss_dssp EEEEEECTTTCCCCEEEEEEESCEEECCTTCC
T ss_pred EEEEEEECCCCCeeCCcccchhhhccchhhhh
Confidence 999999999999974 5999999999998753
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=232.98 Aligned_cols=151 Identities=26% Similarity=0.419 Sum_probs=125.9
Q ss_pred cCCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchh
Q psy10711 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96 (203)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~ 96 (203)
+..++++||.|+||||||||+||+|+++|+||++++...... .....++..+|+.+|..|+.+. .++.|..+
T Consensus 170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l-- 241 (522)
T 2f1z_A 170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSD-KPVGTKKL-- 241 (522)
T ss_dssp TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS-----SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTH--
T ss_pred cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC-----CcccchHHHHHHHHHHHHhcCC-CccCcHHH--
Confidence 346789999999999999999999999999999997753111 2233578999999999999876 57888877
Q ss_pred hhhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhHHhHHHHhhcCCCccccccceeeeeEEEcCCCCC
Q psy10711 97 KHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQE 176 (203)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l~~e~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 176 (203)
+..+. .+.|.+++||||+||+.+||+.|+++++.. ...++|.++|+|.+.+.++|..|++
T Consensus 242 --------~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~----------~~~s~i~~lF~G~~~s~i~C~~C~~ 301 (522)
T 2f1z_A 242 --------TKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT----------CVEGTIPKLFRGKMVSYIQCKEVDY 301 (522)
T ss_dssp --------HHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS----------TTTTHHHHHHCEEEEEEECCSSSCC
T ss_pred --------HhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC----------ccccchhhheeEEEEEEEEcCCCCc
Confidence 66654 367889999999999999999999988631 3346899999999999999999999
Q ss_pred ccceeecCeeeeeeCCCCC
Q psy10711 177 TSSTFEVFSNVSLPLPSND 195 (203)
Q Consensus 177 ~s~~~e~f~~LsL~i~~~~ 195 (203)
.+.+.|+|++|+|+||+..
T Consensus 302 ~s~~~e~f~~LsL~i~~~~ 320 (522)
T 2f1z_A 302 RSDRREDYYDIQLSIKGKK 320 (522)
T ss_dssp CCCEEEEESCEEECCTTCC
T ss_pred eeeeeeeeEEEEEEeCCcc
Confidence 9999999999999999754
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.78 E-value=8.1e-20 Score=144.81 Aligned_cols=102 Identities=22% Similarity=0.247 Sum_probs=81.3
Q ss_pred CCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHH-HHHHHHHhcCCCCcccCccchhhh
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEF-QLIFNMLWAGDSRYFSPQKFKVKH 98 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~p~~~~~~~ 98 (203)
..++||.|+||||||||+||+|+++|++.+.++........ ......+..++ +.+++.|.. ..+.|..+
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~---~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~---- 76 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND---VEYYSETQELLRTEIVNPLRI---YGYVCATK---- 76 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS---CTTHHHHHHHHHHTTHHHHHH---TSEECHHH----
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc---chhHHHHHHHHHHHHHHHHhh---cCCCcHHH----
Confidence 46899999999999999999999999999999987421111 12224688889 899999987 78888888
Q ss_pred hhhhHHHHHHhhhhhcCC-----CCCCCcHHHHHHHHHHHHHHH
Q psy10711 99 ELVGKFKEEVGKMKRTFR-----GYEQQDSHEFLTILIDTLHED 137 (203)
Q Consensus 99 ~~~~~~~~~l~~~~~~f~-----~~~QqDA~Efl~~ll~~l~~e 137 (203)
+..++...|+|. +++||||+||+..|++.|...
T Consensus 77 ------l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ 114 (374)
T 2vhf_A 77 ------IMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRV 114 (374)
T ss_dssp ------HHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCC
T ss_pred ------HHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhc
Confidence 777777777765 389999999999999998764
No 12
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=92.41 E-value=0.043 Score=37.32 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred CCccCcccCCcccchhHHHHHHhC
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSN 43 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~ 43 (203)
..+.|..|..++|++|++||....
T Consensus 11 k~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 11 KTFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp EECCCCCCSSSCHHHHHHHHHHHH
T ss_pred cccccCCCCCcchHHHHHHHHHHH
Confidence 456799999999999999999754
No 13
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=86.89 E-value=0.7 Score=33.85 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=45.7
Q ss_pred CCCCccCcccCCcccchhHHHHHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhh
Q psy10711 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97 (203)
Q Consensus 18 ~~~~~~GL~N~GntCy~Ns~LQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~ 97 (203)
...|.+=|.=.-|+||+||++=+|-..... ++.++..+.. -+|..|
T Consensus 9 ~~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~--------------------------~~~aw~~f~~-----Gd~~~f--- 54 (211)
T 3mp2_A 9 NLNGKIILKQGDNNCWINACCYQLQAFDFF--------------------------NNEAWEKFKK-----GDVMDF--- 54 (211)
T ss_dssp EETTEEEECCCTTCHHHHHHHHHHTTCTTC--------------------------CCHHHHHHTT-----TCCHHH---
T ss_pred eECCEEEEEccCCCcHHHHHHHHHHhcChh--------------------------HHHHHHHHhC-----CChHHH---
Confidence 345566666678999999999887655443 2223333322 234444
Q ss_pred hhhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHH
Q psy10711 98 HELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTL 134 (203)
Q Consensus 98 ~~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l 134 (203)
...+-.. .....|+--||+++|..|+..+
T Consensus 55 -------V~~~Ya~-~~~~~G~~gDa~~~L~~Ll~~~ 83 (211)
T 3mp2_A 55 -------VNLCYAA-TTLARGHSGDAEYLLELMLNDY 83 (211)
T ss_dssp -------HHHHHHH-HTCCTTSCCCHHHHHHHHHTTC
T ss_pred -------HHHHHHH-cCCCCCCCcCHHHHHHHHHHhh
Confidence 3333222 2455688999999999998433
No 14
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=71.90 E-value=5.1 Score=31.20 Aligned_cols=77 Identities=25% Similarity=0.297 Sum_probs=44.5
Q ss_pred CCccCcccCCcccchhHHHHHHhCCHh-HHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhh
Q psy10711 20 PGLTGLKNLGNTCYINSILQCLSNTSP-LREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (203)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~~~-f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~ 98 (203)
.|.+=|.=.-|+||+||++=+|-+... |+. .+++.+...+..+ +|..|
T Consensus 100 ~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~----------------------~~l~~aw~~f~~G-----d~~~F---- 148 (315)
T 2fe8_A 100 GGLTSIKWADNNCYLSSVLLALQQLEVKFNA----------------------PALQEAYYRARAG-----DAANF---- 148 (315)
T ss_dssp TTEECCCCCTTTHHHHHHHHHHHTSCCCBSS----------------------HHHHHHHHHHHHT-----CCHHH----
T ss_pred CCEEEEeecCCccHHHHHHHHHHhcCCccCC----------------------HHHHHHHHHHhCC-----ChHHH----
Confidence 344445556799999999877644322 111 1333444444433 34444
Q ss_pred hhhhHHHHHHhhhhhcCCCCCCCcHHHHHHHHHHHH
Q psy10711 99 ELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTL 134 (203)
Q Consensus 99 ~~~~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~l 134 (203)
...+-.. .....|+--||+++|..|++.-
T Consensus 149 ------Va~~Ya~-~~~~~G~~gDa~~~L~~Ll~~~ 177 (315)
T 2fe8_A 149 ------CALILAY-SNKTVGELGDVRETMTHLLQHA 177 (315)
T ss_dssp ------HHHHHHH-TTCCTTSCCCHHHHHHHHHTTB
T ss_pred ------HHHHHHh-cCCCCCCCccHHHHHHHHHhcC
Confidence 3333222 2344688999999999995544
No 15
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=67.25 E-value=0.84 Score=26.19 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=27.0
Q ss_pred eeeccccccccccCCCCccCcccCCcccchhHH
Q psy10711 5 TFISYRIKIIFWTVGPGLTGLKNLGNTCYINSI 37 (203)
Q Consensus 5 ~~~~~~~~p~~~~~~~~~~GL~N~GntCy~Ns~ 37 (203)
|-.+..+.|.-++.......+.|.--|||-||+
T Consensus 24 pcvkckvaprdwkvknkhlriynmcktcfnnsi 56 (81)
T 2p09_A 24 PCVKCKVAPRDWKVKNKHLRIYNMCKTCFNNSI 56 (81)
T ss_dssp CCTTTSSSCCCEEEETTEEEEESSCHHHHHHHH
T ss_pred cceeeeecCccceeccceeeHHHHHHHHhcCce
Confidence 345666777778888888899999999999986
No 16
>2oqp_A Interleukin-21, IL-21, ZA11; four helix bundle, cytokine, multiple conformers; NMR {Homo sapiens} SCOP: a.26.1.2 PDB: 3tgx_B*
Probab=41.54 E-value=69 Score=21.46 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHhCCHhHHHHHHhhhhccccccCCCCchHHHHHHHHHHHHHhcCCCCcccCccchhhhhhhhHHHHHHh---------
Q psy10711 39 QCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVG--------- 109 (203)
Q Consensus 39 Q~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~l~--------- 109 (203)
|++-.+..+.+++.......+..+.+....|...+|..+-........ +.. .....+.+...+.
T Consensus 13 ~l~~~l~~Lk~~v~~~d~~~L~tP~dvk~~C~~sAL~CFq~~~lk~~~----~~~---n~~~~~~~~k~Lkr~L~~tn~~ 85 (134)
T 2oqp_A 13 QLIDIVDQLKNYVNDLVPEFLPAPEDVETNCEWSAFSCFQKAQLKSAN----TGN---NERIINVSIKKLKRKPPSTNAG 85 (134)
T ss_dssp HHHHHHHHHHHTGGGCCCCCEECCCSCCTTTHHHHHTHHHHTCCCCCC----SSS---SHHHHHHHHHHHSCCCSSSSSC
T ss_pred HHHHHHHHHHHHHhCCcHHHccCCccHHHHHHHHHHHHHHHHHhcccc----cch---hHHHHHHHHHHHHhccCCcccc
Confidence 333333444444444443444444455667777777776644322221 111 1111122222222
Q ss_pred ------hhhhcCCCCCCCcHHHHHHHHHHHHHHHH
Q psy10711 110 ------KMKRTFRGYEQQDSHEFLTILIDTLHEDL 138 (203)
Q Consensus 110 ------~~~~~f~~~~QqDA~Efl~~ll~~l~~e~ 138 (203)
..++.-..+.+.+..||+..|-..|++.+
T Consensus 86 ~~~~~~~~CpsCeSYp~k~~~eFlerL~SLLQK~i 120 (134)
T 2oqp_A 86 RRQKHRLTCPSCDSYEKKPPKEFLERFKSLLQKMI 120 (134)
T ss_dssp SSSCSSCCCCCSTTSCEECHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCccccCcCCHHHHHHHHHHHHHHHH
Confidence 12233345788899999999988887755
No 17
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=34.83 E-value=19 Score=18.49 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=14.7
Q ss_pred ccccccCCCCccCcccCCcccchhH
Q psy10711 12 KIIFWTVGPGLTGLKNLGNTCYINS 36 (203)
Q Consensus 12 ~p~~~~~~~~~~GL~N~GntCy~Ns 36 (203)
.|.| ..+|++-+|..|-=|+
T Consensus 2 TP~W-----R~vs~kP~GA~Crd~~ 21 (40)
T 2l1q_A 2 TPFW-----RGVSLRPIGASCRDDS 21 (40)
T ss_dssp CCTT-----SSCSSBCTTSBCSSGG
T ss_pred cchh-----hhhcCCccchhhccch
Confidence 5677 6678888888886553
No 18
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=31.50 E-value=21 Score=17.36 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHH
Q psy10711 122 DSHEFLTILIDT 133 (203)
Q Consensus 122 DA~Efl~~ll~~ 133 (203)
=|+||+.+|++.
T Consensus 10 aakdFv~WL~ng 21 (31)
T 3c5t_B 10 AVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 468898888753
No 19
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=23.65 E-value=50 Score=15.89 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=9.4
Q ss_pred CCcHHHHHHHHHH
Q psy10711 120 QQDSHEFLTILID 132 (203)
Q Consensus 120 QqDA~Efl~~ll~ 132 (203)
|.=|.+|+.+|++
T Consensus 16 ~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 16 KIHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 3456888888876
No 20
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=22.79 E-value=39 Score=15.48 Aligned_cols=9 Identities=11% Similarity=0.696 Sum_probs=4.9
Q ss_pred chhHHHHHH
Q psy10711 33 YINSILQCL 41 (203)
Q Consensus 33 y~Ns~LQ~L 41 (203)
||+-+||.+
T Consensus 3 fMkDvlql~ 11 (26)
T 1kdl_A 3 FMKDVLRLI 11 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555554
No 21
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=21.72 E-value=60 Score=17.28 Aligned_cols=23 Identities=9% Similarity=0.054 Sum_probs=18.9
Q ss_pred CCccCcccC-CcccchhHHHHHHh
Q psy10711 20 PGLTGLKNL-GNTCYINSILQCLS 42 (203)
Q Consensus 20 ~~~~GL~N~-GntCy~Ns~LQ~L~ 42 (203)
+.+++..|. -|.||-=+..|+..
T Consensus 13 pRPv~~rp~gC~sC~~is~s~Ar~ 36 (47)
T 1xv3_A 13 SRPIFIRPIGCDVCYGIPSSTARL 36 (47)
T ss_dssp CCCCCCCCSSTTCTTTSCHHHHHH
T ss_pred CCCcccCCcCCccccccCHHHHHH
Confidence 377888888 58999999999875
No 22
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=21.20 E-value=19 Score=17.25 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=9.9
Q ss_pred CCcHHHHHHHHHH
Q psy10711 120 QQDSHEFLTILID 132 (203)
Q Consensus 120 QqDA~Efl~~ll~ 132 (203)
|+=|.+|+.+|++
T Consensus 16 ~~aak~fv~wL~~ 28 (29)
T 2g49_C 16 SRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHhc
Confidence 5567888888875
No 23
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.04 E-value=57 Score=18.75 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=12.9
Q ss_pred eEEEcCCCCCccceeec
Q psy10711 167 STVICCNCQETSSTFEV 183 (203)
Q Consensus 167 ~~~~C~~C~~~s~~~e~ 183 (203)
-.++|.+|+.+...++.
T Consensus 14 m~VkCp~C~~~q~VFSh 30 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSH 30 (63)
T ss_dssp EEEECSSSCCEEEEESS
T ss_pred EEEECCCCCCeeEEEec
Confidence 46899999998766544
Done!