RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10711
(203 letters)
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 149 bits (377), Expect = 3e-44
Identities = 67/181 (37%), Positives = 99/181 (54%), Gaps = 16/181 (8%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
G TGL NLGNTCY+NS+LQ L + PLR+Y + S + +L +F+
Sbjct: 1 EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQN--SSELINPLGSLNQLPRALADLFH 58
Query: 80 MLWAGDSR--YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHED 137
L + +S+ SP+ F + +GK + F GY QQD+HEFL L+D LHED
Sbjct: 59 ALQSPNSKNASVSPKNFL---QALGKISPQ-------FSGYMQQDAHEFLLFLLDQLHED 108
Query: 138 LKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYC 197
L ++ N+S+I++LF GQL+S + C C++ SST E FS++SLP+ +
Sbjct: 109 LNSLKKRKSHAAE--NESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSV 166
Query: 198 S 198
Sbjct: 167 L 167
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 144 bits (365), Expect = 4e-40
Identities = 75/196 (38%), Positives = 106/196 (54%), Gaps = 34/196 (17%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK-TSGKLAEEFQLIF 78
G GL+NLGNTCY+NS LQCL +T LR+YF++ E++ S+ G +A + +
Sbjct: 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLI 323
Query: 79 NMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDL 138
L+ G+ F+P FK + +G F EE F GY+QQDS EF+ L+D LHEDL
Sbjct: 324 KQLYDGNLHAFTPSGFK---KTIGSFNEE-------FSGYDQQDSQEFIAFLLDGLHEDL 373
Query: 139 ----------------------KESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQE 176
K+ ++ W E K+N SII++LF G KST+ C C
Sbjct: 374 NRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGS 433
Query: 177 TSSTFEVFSNVSLPLP 192
S TF+ F +++LPLP
Sbjct: 434 VSITFDPFMDLTLPLP 449
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 104 bits (261), Expect = 1e-26
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 38/208 (18%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSG--KLAEEFQLIFNM 80
GL+N GNTCY+N LQCL + L F +++ + + ++F ++
Sbjct: 73 GLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYET 132
Query: 81 LWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE 140
+ SP+ F + + + F G QQDS EFL +D LHEDL
Sbjct: 133 PGCHGPKSISPRNFI----------DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNG 182
Query: 141 SGEKS-------------------------WGEFRKKNKSIISELFYGQLKSTVICCNCQ 175
+ +S W + NKS++++ F+GQ KS + C C
Sbjct: 183 NKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACN 242
Query: 176 ETSSTFEVFSNVSLPLPSNDYCSLRVSF 203
TS+T +FS + +P L+
Sbjct: 243 YTSTTIAMFSTLLVPPYEVVQLGLQECI 270
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 98.9 bits (247), Expect = 4e-25
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEF-------Q 75
GL+NLGNTC++NS+LQCL++T PL Y ++ +SK E F
Sbjct: 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSR-------EHSKDCCN--EGFCMMCALEA 52
Query: 76 LIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLH 135
+ L + S S + F + ++ + FR Q+D+HEFL L+D +
Sbjct: 53 HVERALAS--SGPGSAPRI---------FSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQ 101
Query: 136 ED-LKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSL 189
+ L + + + +++ ++F G L+S V C NC+ S+T++ F ++SL
Sbjct: 102 KACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSL 156
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 98.2 bits (245), Expect = 9e-25
Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRS---MTAAYSKTSGKLAEEFQLIFNM 80
GL NLG TC++N ILQ L + LR YF+++ + S S + E FQ
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQ---EF 58
Query: 81 LWAGDSRYFSPQKF-----KVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLH 135
++GD + P K L GY QQD+HEF L+D LH
Sbjct: 59 YYSGDRSPYGPINLLYLSWKHSRNLA---------------GYSQQDAHEFFQFLLDQLH 103
Query: 136 EDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN 194
++ E II + F G L+S+V C C S+T + F ++SL +P+
Sbjct: 104 THYGGDKNEANDE--SHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNK 160
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 83.5 bits (207), Expect = 7e-20
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 23/85 (27%)
Query: 119 EQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETS 178
+QQD+ EFL L+D LH SII +LF GQLKS + C C +TS
Sbjct: 21 DQQDAQEFLLFLLDGLH-------------------SIIVDLFQGQLKSRLTCLTCGKTS 61
Query: 179 STFEVFSNVSLPLPSN----DYCSL 199
+TFE F+ +SLP+PS +L
Sbjct: 62 TTFEPFTYLSLPIPSGSGDAPKVTL 86
Score = 51.9 bits (125), Expect = 3e-08
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 24 GLKNLGNTCYINSILQCLSNT 44
GL+NLGNTCY+NSILQCLS
Sbjct: 1 GLRNLGNTCYMNSILQCLSAD 21
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 82.0 bits (203), Expect = 6e-19
Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 67/178 (37%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
GL NLGNTC+ N+++Q LS T LRE S+T +L +
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELL------------SETPKELFSQV--------- 39
Query: 84 GDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGE 143
+PQ F+GY+QQDSHE L L+D L
Sbjct: 40 ---CRKAPQ----------------------FKGYQQQDSHELLRYLLDGL--------- 65
Query: 144 KSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPL--PSNDYCSL 199
++ I +F G+L ST++C +C S +E F ++SLP CS+
Sbjct: 66 ----------RTFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSI 113
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 81.0 bits (200), Expect = 1e-18
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 118 YEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQET 177
EQQD+HEFL L+D LHE+LK KS+I +LF G+L+ST++C C
Sbjct: 20 SEQQDAHEFLLFLLDKLHEELK--KSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHE 77
Query: 178 SSTFEVFSNVSLPLPSND 195
S + E +SLPLP
Sbjct: 78 SVSTEPELFLSLPLPVKG 95
Score = 46.7 bits (111), Expect = 2e-06
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 24 GLKNLGNTCYINSILQCLSN 43
GL NLGNTCY+NS+LQ L +
Sbjct: 1 GLNNLGNTCYLNSVLQALFS 20
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 81.5 bits (202), Expect = 2e-18
Identities = 49/170 (28%), Positives = 67/170 (39%), Gaps = 26/170 (15%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSM-TAAYSKTSGKLAEEFQLIFN 79
G GLKN G TCY+NS+LQ L T R + S Q +F
Sbjct: 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPL-----ALQRLFL 55
Query: 80 MLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLK 139
L +S + EL K + TF EQ D EF +L D L E LK
Sbjct: 56 FLQLSESPVKTT-------ELTDKTRSFGWDSLNTF---EQHDVQEFFRVLFDKLEEKLK 105
Query: 140 ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSL 189
+G+ + +I LF G+L + +IC C S E F ++ +
Sbjct: 106 GTGQ----------EGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQV 145
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 73.1 bits (180), Expect = 1e-15
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEF--QLI--FN 79
GL+NLGN+CY+NS+LQ L + + + + + A + QLI +
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYD-----DLENKFPSDVVDPANDLNCQLIKLAD 55
Query: 80 MLWAGDSRYFSPQKFKVKHELVG----KFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLH 135
L +G + K + VG FK +GK F QQD+ EFL LID L
Sbjct: 56 GLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLD 115
Query: 136 EDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSND 195
+ ++ + ++LF ++ + C +C++ T E+ +SLP+P ++
Sbjct: 116 RESFKNLGLN-----------PNDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDE 164
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 72.7 bits (179), Expect = 2e-15
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 43/180 (23%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
GL+N GNTCY NS+LQ L YF L + +F +
Sbjct: 1 GLENFGNTCYCNSVLQAL--------YFEN----------------LLTCLKDLFESISE 36
Query: 84 GDSRY--FSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDL--- 138
R SP+KF + + K E F Y QD+HEFL L++ + E L
Sbjct: 37 QKKRTGVISPKKF------ITRLKRE----NELFDNYMHQDAHEFLNFLLNEIAEILDAE 86
Query: 139 ----KESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN 194
K + + + + + + E+F G L + C C+ SS E F ++S+ + N
Sbjct: 87 RKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQN 146
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 71.7 bits (176), Expect = 6e-15
Identities = 44/174 (25%), Positives = 62/174 (35%), Gaps = 28/174 (16%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYF------VTEFKRSMTAAYSKTSGKLAEEFQLI 77
GLKNLG TCY+NS LQ R+ ++M + ++ QLI
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 78 FNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHED 137
F L G+ P F L +QQD+ EF + + L
Sbjct: 61 FAQLQFGNRSVVDPSGFVKALGLDTG---------------QQQDAQEFSKLFLSLLEAK 105
Query: 138 LKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPL 191
L +S K+I+ +LF G+ C C SS F + L L
Sbjct: 106 LSKSKN-------PDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQL 152
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 71.5 bits (175), Expect = 6e-15
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 40/185 (21%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
GL NLGNTCY+NS+LQ L YF FK + S S E+ Q F
Sbjct: 22 LPFVGLNNLGNTCYLNSVLQVL--------YFCPGFKHGLKHLVSLISSV--EQLQSSFL 71
Query: 80 MLWAGDSRYFSPQKFKVKH--ELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHED 137
+ P+K+ + + + + ++ + GY Q D+ E L ++ + E
Sbjct: 72 LN---------PEKYNDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE- 121
Query: 138 LKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYC 197
++ + F GQL C C+ + E F ++S+P+ ++
Sbjct: 122 ------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELS 163
Query: 198 SLRVS 202
S
Sbjct: 164 KSEES 168
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 66.7 bits (163), Expect = 3e-13
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 40/180 (22%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
GL NLGNTCY+NS+LQ L R + S+ S + ++ QL+
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVL-----SLNLPRLGDSQSVMKKLQLLQ-AHLM 54
Query: 84 GDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGE 143
R F E F QQD E+L L+D LH
Sbjct: 55 HTQRRAEAP--------PDYFLEAS--RPPWFTPGSQQDCSEYLRYLLDRLH-------- 96
Query: 144 KSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPS-----NDYCS 198
++I ++F G+L +T+ C NC TS+ E F ++ L PS N + S
Sbjct: 97 -----------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFPSVQDLLNYFLS 145
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 66.2 bits (162), Expect = 6e-13
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 38/157 (24%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
PG GL N+ N Y N I+Q LS+ P+R +F+ Y + +L+
Sbjct: 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLL---------YENYENIKDRKSELVKR 167
Query: 80 M------LWAGDSRYFSPQKFKVK---HELVGKFKEEVGKM-KRTFRGYEQQDSHEFLTI 129
+ +W +P+ FK HEL+ + V K+ K+ F EQ D EFL+
Sbjct: 168 LSELIRKIW-------NPRNFKGHVSPHELL----QAVSKVSKKKFSITEQSDPVEFLSW 216
Query: 130 LIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLK 166
L++TLH+DL S K N SII + F G+++
Sbjct: 217 LLNTLHKDLGGSK--------KPNSSIIHDCFQGKVQ 245
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 61.6 bits (149), Expect = 3e-11
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 25/181 (13%)
Query: 19 GPG-LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLI 77
P GL NLGN+CY++S++Q L + +E F + + + +L+
Sbjct: 299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLL 358
Query: 78 FNMLWAGDSRY---FSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTL 134
M D+ Y SP FK L+G+ E GK + QQD+HEFL L++ +
Sbjct: 359 SKMKETPDNEYVNGISPLDFK---MLIGQDHPEFGK-------FAQQDAHEFLLFLLEKI 408
Query: 135 HEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN 194
+ R I+ LF +++ + C C + S ++E + + L N
Sbjct: 409 RK-----------GERSYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGN 457
Query: 195 D 195
D
Sbjct: 458 D 458
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 55.0 bits (133), Expect = 3e-09
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 18/149 (12%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
GL NLGNTCY+NS LQCL + LR+ + + + A +++S L + +F+ +
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDA-LKNYNPARRGA-NQSSDNLTNALRDLFDTM-D 57
Query: 84 GDSRYFSPQKF-KVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESG 142
P +F ++ +F E+ + GY QQD+ E + L+ L + L +G
Sbjct: 58 KKQEPVPPIEFLQLLRMAFPQFAEKQNQ-----GGYAQQDAEECWSQLLSVLSQKLPGAG 112
Query: 143 EKSWGEFRKKNKSIISELFYGQLKSTVIC 171
K I +LF +L++ + C
Sbjct: 113 SKGS---------FIDQLFGIELETKMKC 132
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 52.5 bits (126), Expect = 3e-08
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 43/196 (21%)
Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVT--EFK---------------RSMTAAYSK 65
GL N+GNTCY+NS+LQ PLR+ + E K R ++ + +
Sbjct: 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQ 61
Query: 66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHE 125
S + E + +FN L ++R +P K EL + QQD E
Sbjct: 62 RSNQFVYELRSLFNDLIHSNTRSVTPSK-----EL-------------AYLALRQQDVTE 103
Query: 126 FLTILIDTLHEDLKESGEKSWGEFRKKNKS---IISELFYGQLKSTVICCNCQETSST-- 180
+ ++ L L+ G + +K +I LF G+ K ++ + S
Sbjct: 104 CIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRT 163
Query: 181 -FEVFSNVSLPLPSND 195
E F SL +
Sbjct: 164 KTERFL--SLLVDVGK 177
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 52.0 bits (125), Expect = 3e-08
Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 31/181 (17%)
Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLW 82
+GL+N G CY+N++LQ + PL + + S L E +F+ML
Sbjct: 1 SGLENNGPNCYLNALLQLMFFIPPLFNAIL---RHSADCPKEN---CLLCELGFLFDML- 53
Query: 83 AGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGY-------EQQDSHEFLTILIDTLH 135
S + Q + RTF G QQD E +++ L
Sbjct: 54 -DKSTGQNCQ---------------ATNLLRTFSGIPEAAALGLQQDIQEANRFILEQLS 97
Query: 136 EDLKESGEKSWGEFRKKNKSI-ISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSN 194
L + + LF S++ C +C S E + LP P
Sbjct: 98 LPLLTLKPDIFHNRCTGESGDSLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYPPI 157
Query: 195 D 195
D
Sbjct: 158 D 158
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 47.2 bits (112), Expect = 2e-06
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 28/169 (16%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
G GL+N G TCY+NS+LQ L + R+ + + S LA Q +F
Sbjct: 192 GYVGLRNQGATCYMNSLLQSLFFIAKFRK---DVYGIPTDHPRGRDSVALA--LQRLFYN 246
Query: 81 LWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE 140
L G+ + EL F + + + Q D EF +L D L + ++
Sbjct: 247 LQTGEEPVDTT-------ELTRSFGWD------SDDSFMQHDIQEFNRVLQDNLEKSMRG 293
Query: 141 SGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSL 189
+ ++ ++ +F G++KS + C N S+ E F ++ L
Sbjct: 294 T----------VVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQL 332
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 240
Score = 42.4 bits (100), Expect = 4e-05
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREY 50
GL NLGNTC++NS+LQ L++ L EY
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEY 27
Score = 40.8 bits (96), Expect = 2e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 20/77 (25%)
Query: 119 EQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETS 178
EQQD+HE +L++TL ++ F G L S ++C C E+S
Sbjct: 33 EQQDAHELFQVLLETLE-------------------QLLKFPFDGLLASRIVCLQCGESS 73
Query: 179 S-TFEVFSNVSLPLPSN 194
+E F+ +SLP+P+
Sbjct: 74 KVRYESFTMLSLPVPNQ 90
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 34.8 bits (80), Expect = 0.016
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 108 VGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIIS----ELFYG 163
+GK+ F +QQD+HEFL L++ + +D+ + + N I E F
Sbjct: 21 IGKINTEFDNDDQQDAHEFLLTLLEAI-DDIMQVNRTNVPPS---NIEIKRLNPLEAFKY 76
Query: 164 QLKSTVICCNC--QETSSTFEVFSNVSLPLPSNDYCSL 199
++S+ +C C +E S F +VS + N
Sbjct: 77 TIESSYVCIGCSFEENVSDVGNFLDVS--MIDNKLDID 112
Score = 32.9 bits (75), Expect = 0.081
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 25 LKNLGNTCYINSILQCLSNTSPLREYF 51
L N GN+CY NS +Q LS+ + F
Sbjct: 2 LVNTGNSCYFNSTMQALSSIGKINTEF 28
>gnl|CDD|227699 COG5412, COG5412, Phage-related protein [Function unknown].
Length = 637
Score = 33.2 bits (76), Expect = 0.075
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 3 IITFISYRIKIIFWTVGPGLTGLKN--------LGN---------TCYINSILQCLSNTS 45
II+ I+ IKIIF V P + LKN +G T +N+I +SN S
Sbjct: 381 IISTIADVIKIIFDGVKPIINFLKNIFSLIGSKVGMAIIPVLGIITTVMNTIKSTISNGS 440
Query: 46 PLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97
+ T ++ ++ + F I W G + SP KV
Sbjct: 441 IAIKSVATRIFSGRSSIFNGVRNLITIVFDGI-RGAWGGLTSAVSPIFSKVG 491
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 228
Score = 32.1 bits (73), Expect = 0.13
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 24 GLKNLGNTCYINSILQCLSNT 44
GLKN+GNTC+ ++++Q L +
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQ 21
>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division
and chromosome partitioning].
Length = 212
Score = 30.9 bits (70), Expect = 0.34
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 112 KRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQ 164
FRGY++++ EFL +ID + L E+ + + + EL
Sbjct: 17 GTGFRGYDEEEVDEFLDDVIDDYEQLLDENEDL-----EDEIDELKEELKEAA 64
>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaB-crystallin
(HspB5, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4
does not belong to this group. HspB5 shows increased
synthesis in response to stress. HspB5 is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. Its functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Length = 84
Score = 28.8 bits (64), Expect = 0.51
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 8/44 (18%)
Query: 85 DSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLT 128
D ++FSP++ KVK ++G F E GK + E+QD H F++
Sbjct: 14 DVKHFSPEELKVK--VLGDFIEIHGKHE------ERQDEHGFIS 49
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Mutations in HspB4 have been associated with Autosomal
Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is
ubiquitous and is involved in diverse functions
including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of apoptosis.
It interacts with the universal scaffolding and adaptor
protein 14-3-3, and also with the proapoptotic protein
Bax.
Length = 83
Score = 27.8 bits (62), Expect = 1.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 85 DSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLT 128
D ++FSP++ VK ++G F E GK + E+QD H F++
Sbjct: 14 DVKHFSPEELSVK--VLGDFVEIHGKHE------ERQDEHGFIS 49
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or 'arrest'
during elongation process. It is thus possible that BEX
is also acting in this way.
Length = 97
Score = 27.3 bits (61), Expect = 1.9
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 63 YSKTSGKLAEEF-QLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQ 121
K G + + N +R+ S ++ + + + +F EE+ +++R R
Sbjct: 30 GKKPEGNFRRRLRRSLPNFREDIPNRHLSNEEMIREADDMERFVEEMREVRRKLRPPHWD 89
Query: 122 DSHEF 126
F
Sbjct: 90 HHDSF 94
>gnl|CDD|221997 pfam13233, Complex1_LYR_2, Complex1_LYR-like. This is a family
of proteins carrying the LYR motif of family
Complex1_LYR, pfam05347, likely to be involved in Fe-S
cluster biogenesis in mitochondria.
Length = 97
Score = 26.6 bits (59), Expect = 3.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 41 LSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
LS+ S R Y EF+R A + + + +E + L A
Sbjct: 22 LSSLSLGRRYVRKEFRRHAGATDDELAKEFLQEAENYLAYLKA 64
>gnl|CDD|150167 pfam09404, DUF2003, Eukaryotic protein of unknown function
(DUF2003). This is a family of proteins of unknown
function which adopt an alpha helical and beta sheet
structure.
Length = 447
Score = 27.3 bits (60), Expect = 5.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 104 FKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYG 163
F+ EV + + R Q +FL L+ TLH S +SWG+ ++ + LF G
Sbjct: 188 FQLEVDVLTQLLRCQAQISEWKFLPSLL-TLHG--AHSKLQSWGQTFERQRETRKHLFGG 244
Query: 164 QLKSTV 169
Q + V
Sbjct: 245 QSQKAV 250
>gnl|CDD|239408 cd03155, CD151_like_LEL, Tetraspanin, extracellular domain or large
extracellular loop (LEL), CD151_Like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". CD151strongly associates with integrins,
especially alpha3beta1, alpha6beta1, alpha7beta1, and
alpha6beta4; it may play roles in cell-cell adhesion,
cell migration, platelet aggregation, and angiogenesis.
For example, CD151 is is involved in regulation of
migration of neutrophils, endothelial cells, and various
tumor cell lines; it associates specifically with
laminin-binding integrins and strengthens alpha6beta1
integrin-mediated adhesion to laminin-1; CD151 also
specifically attenuates adhesion-dependent activation of
Ras and correspdonding downstream effects, and is
involved in epithelial cell-cell adhesion as a modulator
of PKC- and Cdc42-dependent actin cytoskeletal
reorganization.
Length = 110
Score = 26.2 bits (58), Expect = 6.2
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 103 KFKEEVGK-MKRTFRGYEQQDSHEFLTILIDTLHEDLK 139
+ ++E+ + +KRT + Q E LT+ +D L ++ K
Sbjct: 6 QLEDELKESLKRTMQENYGQSGEEALTLTVDELQQEFK 43
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 26.5 bits (59), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 112 KRTFRGYEQQDSHEFLTILID---TLH---EDLKE 140
K+ RGY+ + EFL +I L+ E+LKE
Sbjct: 12 KKKMRGYDPDEVDEFLDQVIKDYEALYKENEELKE 46
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 27.1 bits (60), Expect = 7.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 89 FSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEK---- 144
F P K K KH+L EE K+++ YEQQ E + +D+K+SG
Sbjct: 250 FEPPKPKTKHKLDISSVEEYKKLQK----YEQQKFKEMI--------DDIKKSGANIVIC 297
Query: 145 SWG 147
WG
Sbjct: 298 QWG 300
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in
gastric mucosa. Gastricsin is also called pepsinogen C.
Gastricsins are produced in gastric mucosa of mammals.
It is synthesized by the chief cells in the stomach as
an inactive zymogen. It is self-converted to a mature
enzyme under acidic conditions. Human gastricsin is
distributed throughout all parts of the stomach.
Gastricsin is synthesized as an inactive progastricsin
that has an approximately 40 residue prosequence. It is
self-converting to a mature enzyme being triggered by a
drop in pH from neutrality to acidic conditions. Like
other aspartic proteases, gastricsin are characterized
by two catalytic aspartic residues at the active site,
and display optimal activity at acidic pH. Mature enzyme
has a pseudo-2-fold symmetry that passes through the
active site between the catalytic aspartate residues.
Structurally, aspartic proteases are bilobal enzymes,
each lobe contributing a catalytic aspartate residue,
with an extended active site cleft localized between the
two lobes of the molecule. One lobe may be evolved from
the other through ancient gene-duplication event.
Although the three-dimensional structures of the two
lobes are very similar, the amino acid sequences are
more divergent, except for the conserved catalytic site
motif. This family of aspartate proteases is classified
by MEROPS as the peptidase family A1 (pepsin A, clan
AA).
Length = 318
Score = 26.8 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 162 YGQLKSTVICCNCQETSSTFEVFSNVSLPLP-------SNDYCSLRV 201
YGQ V C N Q + + VS PLP +N YC++ +
Sbjct: 234 YGQY--VVNCNNIQNLPTLTFTINGVSFPLPPSAYILQNNGYCTVGI 278
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,998,271
Number of extensions: 897634
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 50
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)