RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10711
(203 letters)
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 201 bits (513), Expect = 6e-64
Identities = 86/217 (39%), Positives = 113/217 (52%), Gaps = 31/217 (14%)
Query: 8 SYRIKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK- 65
+ +F GP LTGL+NLGNTCY+NSILQCL N L +YF ++ + +
Sbjct: 48 IRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLG 107
Query: 66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHE 125
G++AEEF +I LW G RY SP+ FK +GK+ F GY QQDS E
Sbjct: 108 HKGEVAEEFGIIMKALWTGQYRYISPKDFK----------ITIGKINDQFAGYSQQDSQE 157
Query: 126 FLTILIDTLHEDLK-------------------ESGEKSWGEFRKKNKSIISELFYGQLK 166
L L+D LHEDL ++ E +W + ++ N+SII LF GQ K
Sbjct: 158 LLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217
Query: 167 STVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF 203
STV C C + S TFE F +SLPL S C+L+
Sbjct: 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCL 254
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 193 bits (493), Expect = 2e-61
Identities = 67/206 (32%), Positives = 98/206 (47%), Gaps = 30/206 (14%)
Query: 16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQ 75
GL GL+NLGNTC++NSILQCLSNT LR+Y + S L EEF
Sbjct: 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA 62
Query: 76 LIFNMLWAGDSR-YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTL 134
+ +W SP +FK ++ + F GY QQD+ EFL L+D L
Sbjct: 63 KLIQTIWTSSPNDVVSPS----------EFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGL 112
Query: 135 HEDLK-------------------ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQ 175
H ++ E G + W ++ ++ S I +LF GQLKS++ C +C
Sbjct: 113 HNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG 172
Query: 176 ETSSTFEVFSNVSLPLPSNDYCSLRV 201
S+ F+ F ++SLP+ Y + +
Sbjct: 173 YCSTVFDPFWDLSLPIAKRGYPEVTL 198
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 186 bits (473), Expect = 3e-58
Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 31/207 (14%)
Query: 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK-TSGKLAEEFQ 75
+ PGL GL NLGNTC++NS LQCLSNT+PL +YF+ E++ + G++AE +
Sbjct: 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYA 63
Query: 76 LIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLH 135
+ +W+G + +P+ FK +VG+ F GY+QQDS E L L+D LH
Sbjct: 64 ELIKQMWSGRDAHVAPRMFK----------TQVGRFAPQFSGYQQQDSQELLAFLLDGLH 113
Query: 136 EDLK-------------------ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQE 176
EDL +++W R +N S+I + F+G KST++C C +
Sbjct: 114 EDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAK 173
Query: 177 TSSTFEVFSNVSLPLPSNDYCSLRVSF 203
S TF+ F ++LPLP +
Sbjct: 174 VSVTFDPFCYLTLPLPLKKDRVMEGPM 200
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 175 bits (446), Expect = 7e-54
Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 16/192 (8%)
Query: 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQL 76
+ GL NLGNTCY+N+ +QC+ + L++ + ++ + +
Sbjct: 9 SAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRD 68
Query: 77 IFNMLWAGDSRYFSPQKFK-VKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLH 135
+F+ + S P H +F E K Y QQD++E ++ L
Sbjct: 69 LFDSMDKT-SSSIPPIILLQFLHMAFPQFAE-----KGEQGQYLQQDANECWIQMMRVLQ 122
Query: 136 EDLKESGEK---------SWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSN 186
+ L+ + + K KS+I + F + ++T+ C +E T +
Sbjct: 123 QKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQ 182
Query: 187 VSLPLPSNDYCS 198
+ L N
Sbjct: 183 LQLSCFINQEVK 194
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 167 bits (423), Expect = 6e-51
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 46/218 (21%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
G GL+NLGNTC++N++LQCLS+T PLR++ + R + + +L E F +
Sbjct: 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR-AQELTEAFADVIGA 60
Query: 81 LWAGDS-RYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDL- 138
LW DS +P +F+ K +F GY QQD+ EFL +L++ LH ++
Sbjct: 61 LWHPDSCEAVNP----------TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEIN 110
Query: 139 ---------------------------------KESGEKSWGEFRKKNKSIISELFYGQL 165
+ W + ++ S I +LF GQL
Sbjct: 111 RRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQL 170
Query: 166 KSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF 203
KS + C C S+TFEVF ++SLP+P + +VS
Sbjct: 171 KSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSL 208
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 163 bits (415), Expect = 1e-48
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 9/190 (4%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
GL+GL N+G+TC+++SILQCL + + +++ + S + I +
Sbjct: 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSP-DKCFSCALDKIVH 197
Query: 80 MLWAGDSR--YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHED 137
L+ + S + K+ + GY QQD+HEF +I+ +H+
Sbjct: 198 ELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQS 257
Query: 138 LKES---GEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSS-TFEVFSNVSLPLPS 193
++ K+ + I+ +F G L+S+++C CQ S T + F ++SL +
Sbjct: 258 YVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD 317
Query: 194 NDYCSLRVSF 203
L
Sbjct: 318 K--KKLYECL 325
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 148 bits (373), Expect = 2e-41
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 23/190 (12%)
Query: 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIF 78
GPG TG++NLGN+CY+NS++Q L + + +V + ++ A + + + + +
Sbjct: 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLG 400
Query: 79 NMLWAGD----------SRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLT 128
+ L +G+ QK FK +GK F QQD+ EF
Sbjct: 401 HGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFL 460
Query: 129 ILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVS 188
LI+ + + + S +E+F ++ + C ++ T V +
Sbjct: 461 HLINMVERNCRSSENP-------------NEVFRFLVEEKIKCLATEKVKYTQRVDYIMQ 507
Query: 189 LPLPSNDYCS 198
LP+P + +
Sbjct: 508 LPVPMDAALN 517
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 119 bits (299), Expect = 1e-32
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 30/183 (16%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
G GLKN G TCY+NS+LQ L T+ LR+ M +S + Q +F
Sbjct: 5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAV-----YMMPTEGDDSSKSVPLALQRVFYE 59
Query: 81 LWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE 140
L D + + K F E T + Q D E +L+D + +K
Sbjct: 60 LQHSDKPVGTKKLTK-------SFGWE------TLDSFMQHDVQELCRVLLDNVENKMKG 106
Query: 141 SGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLR 200
+ + I +LF G++ S + C S E + ++ L + ++
Sbjct: 107 TCV----------EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKK--NIF 154
Query: 201 VSF 203
SF
Sbjct: 155 ESF 157
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 115 bits (288), Expect = 3e-30
Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 30/183 (16%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
G GLKN G TCY+NS+LQ L T+ LR+ M +S + Q +F
Sbjct: 174 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAV-----YMMPTEGDDSSKSVPLALQRVFYE 228
Query: 81 LWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKE 140
L D + + K F T + Q D E +L+D + +K
Sbjct: 229 LQHSDKPVGTKKLTK-------SFG------WETLDSFMQHDVQELCRVLLDNVENKMKG 275
Query: 141 SGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSLR 200
+ + I +LF G++ S + C S E + ++ L + ++
Sbjct: 276 TCV----------EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKK--NIF 323
Query: 201 VSF 203
SF
Sbjct: 324 ESF 326
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 105 bits (262), Expect = 4e-27
Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%)
Query: 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF----VTEFKRSMTAAYSKTSGKLAE 72
G KN+GNTCY+N+ LQ L + LR+ ++ + A + ++
Sbjct: 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVI 78
Query: 73 EFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILID 132
E + F L + P + K + + Y+QQD+ E T L
Sbjct: 79 EMKRCFENLQNKSFKSVLPVVLL---NTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFH 135
Query: 133 TLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLP 192
++ + SE F Q K+T+ + E S+ L
Sbjct: 136 SMSIVFGDK---------------FSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCH 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-05
Identities = 39/198 (19%), Positives = 59/198 (29%), Gaps = 72/198 (36%)
Query: 29 GNT-CYINSILQCLSNTSPLREYFVTEFKRSMTAA---YSKTSGKLAEEFQLIFNML-W- 82
GNT Y L+ L T V + + +T+ + F N+L W
Sbjct: 164 GNTDDYFEE-LRDLYQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 83 -----AGDSRYFS------P-----Q--KFKVKHELVGKFKEEVGKMKRTFRGYEQQDSH 124
D Y P Q + V +L+G G+++ +G
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF---TPGELRSYLKG------- 269
Query: 125 EFLT---------ILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQ 175
T + I + SW F + I+ LF+ I C
Sbjct: 270 --ATGHSQGLVTAVAI---------AETDSWESFFVSVRKAITVLFF-------IGVRCY 311
Query: 176 ETSSTFEVFSNVSLPLPS 193
E + N SLP PS
Sbjct: 312 EA------YPNTSLP-PS 322
Score = 29.2 bits (65), Expect = 1.1
Identities = 41/248 (16%), Positives = 59/248 (23%), Gaps = 108/248 (43%)
Query: 36 SIL---QCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQ 92
+L S L+E +F + + E F A D +P
Sbjct: 19 VLLVPTASFFIASQLQE----QFNKILPEPT--------EGF--------AADDEPTTPA 58
Query: 93 KFKVKHELVGKF---------KEEVGKM----KRTFRGYEQQ-----DSHEFLTILIDTL 134
ELVGKF +VG+ +E D H L+
Sbjct: 59 ------ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ-- 110
Query: 135 HEDLKESGEKSW------------GEFRKKNKSIISE-----------LFYGQ------- 164
D K F KK+ S + +F GQ
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 165 --LK----------------STVICCNCQETSSTFEVFSNVSLPL----------PSNDY 196
L+ S T+ E L + P DY
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 197 -CSLRVSF 203
S+ +S
Sbjct: 231 LLSIPISC 238
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 38.2 bits (88), Expect = 0.001
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSKTSGKLAEEFQLIFNMLW 82
G++ N+CY++S L CL S + + + +++ YS+T L E I N L
Sbjct: 11 GIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTE---IVNPLR 67
Query: 83 AGDSRYFSPQKFKVKHELVGKFKE---EVGKMKRTFRGYEQQDSHEFLTILIDTL 134
+ V + K ++ +V E++D EFL IL +
Sbjct: 68 IY--------GY-VCATKIMKLRKILEKVEAASGFT--SEEKDPEEFLNILFHHI 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.006
Identities = 36/232 (15%), Positives = 67/232 (28%), Gaps = 66/232 (28%)
Query: 14 IFWTVGPGLTGLKNLGNTCYINSILQCLSN-----------------TSPLREYFVTEFK 56
IFW NL N ++L+ L LR + +
Sbjct: 184 IFWL---------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 57 RS--MTAAYSKT--------SGKLAEEFQL------------IFNMLWAGDSRYFSPQKF 94
R + Y + K F L + + L A + + S
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS---- 290
Query: 95 KVKHELVGKFKEEVGKMKRTFRGYEQQD-SHEFLTI---LIDTLHEDLKESGEKSWGEFR 150
+ H + +EV + + QD E LT + + E +++ G +W ++
Sbjct: 291 -LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWK 348
Query: 151 K---KNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSL 199
+ I E L+ ++ VF S +P+ +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEY----RKMFDRLSVFPP-SAHIPTILLSLI 395
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.18
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 105 KEEVGKMKRTFRGYEQQDSHEFLTI 129
K+ + K++ + + Y DS L I
Sbjct: 19 KQALKKLQASLKLYA-DDSAPALAI 42
>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA;
FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*
Length = 299
Score = 31.2 bits (70), Expect = 0.21
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 105 KEEVGKMKRTFRGYEQQDSHEFLTI-LIDTLHEDLKESGEKSWGEFRKKNKSI 156
E ++K + Q + LT+ +I+ L+ L+ + ++K+N +
Sbjct: 131 PELKEQLKTAIEDFLQNSQGKPLTVQMIENLNHGLRPDEGEGRLLYKKENLTK 183
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains,
FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic
residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Length = 967
Score = 30.3 bits (67), Expect = 0.45
Identities = 20/193 (10%), Positives = 59/193 (30%), Gaps = 34/193 (17%)
Query: 45 SPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR-YFSPQKFKVKHELVGK 103
+ R F+ S + + + G L + +LI + + R +P +++ L +
Sbjct: 507 AIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYR 566
Query: 104 FKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIIS----- 158
+ ++ + + IL+D +++ + + + +K I
Sbjct: 567 TAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIGDDNPLT 626
Query: 159 -----------------------ELFYGQLKS-----TVICCNCQETSSTFEVFSNVSLP 190
+ + + + C + + T +V ++ P
Sbjct: 627 LIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNP 686
Query: 191 LPSNDYCSLRVSF 203
+ + + F
Sbjct: 687 MKAGTQLLAGLRF 699
>2wuj_A Septum site-determining protein diviva; bacterial cell division,
septation, cell cycle, sporulation; 1.40A {Bacillus
subtilis} PDB: 2wuk_A
Length = 57
Score = 27.0 bits (60), Expect = 0.98
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 112 KRTFRGYEQQDSHEFLTILIDTLHEDLKE 140
++FRGY++ + +EFL + L++
Sbjct: 14 TKSFRGYDEDEVNEFLAQVRKDYEIVLRK 42
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.0
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 105 KEEVG-KMKRTFRGYEQQDSHEFLTILIDTLHEDLKESGEKSWGEFRKKNKSIISELFYG 163
+ M++ +R ++D E+ ++ E EK K N I + FY
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEW--------NQRQSEQVEK-----NKINNRIADKAFYQ 147
Query: 164 QLKSTVI 170
Q + +I
Sbjct: 148 QPDADII 154
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear
protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Length = 425
Score = 26.8 bits (58), Expect = 5.3
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 75 QLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRG---YEQQDSHEFLTILI 131
+L N+ D+ Y + F ++EL ++++V ++ +Q + + + +
Sbjct: 111 KLPINV---SDNPYTAADNFLARYELPMSYRDQVVQLILKNTNGISLDQPNDNASSSAVS 167
Query: 132 DTLHEDLKESGEKSWGEFRKKNKSIISE 159
+ +K K + N I
Sbjct: 168 PSKTSVMKVLPVKQYLIMENYNPDTILN 195
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus,
UBL conjugation PA protein binding; 1.90A {Saccharomyces
cerevisiae}
Length = 362
Score = 26.8 bits (58), Expect = 5.5
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 75 QLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKM 111
+L N+ D+ Y + F ++EL ++++V +
Sbjct: 48 KLPINV---SDNPYTAADNFLARYELPMSYRDQVVQF 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,942,873
Number of extensions: 158533
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 22
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)