RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10711
(203 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 122 bits (307), Expect = 2e-34
Identities = 86/214 (40%), Positives = 111/214 (51%), Gaps = 31/214 (14%)
Query: 11 IKIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMT--AAYSKTSG 68
+ +F GP LTGL+NLGNTCY+NSILQCL N L +YF + + G
Sbjct: 4 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKG 63
Query: 69 KLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLT 128
++AEEF +I LW G RY SP+ FK+ GK+ F GY QQDS E L
Sbjct: 64 EVAEEFGIIMKALWTGQYRYISPKDFKITI----------GKINDQFAGYSQQDSQELLL 113
Query: 129 ILIDTLHEDLKESG-------------------EKSWGEFRKKNKSIISELFYGQLKSTV 169
L+D LHEDL ++ E +W + ++ N+SII LF GQ KSTV
Sbjct: 114 FLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTV 173
Query: 170 ICCNCQETSSTFEVFSNVSLPLPSNDYCSLRVSF 203
C C + S TFE F +SLPL S C+L+
Sbjct: 174 QCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCL 207
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 115 bits (287), Expect = 2e-31
Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
GL NLGNTCY+N+ +QC+ + L++ + ++ + + +F+ +
Sbjct: 6 GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDK 65
Query: 84 GDSRYFSPQKFK-VKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLKES- 141
S P H +F E K Y QQD++E ++ L + L+
Sbjct: 66 T-SSSIPPIILLQFLHMAFPQFAE-----KGEQGQYLQQDANECWIQMMRVLQQKLEAIE 119
Query: 142 --------GEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPS 193
+ K KS+I + F + ++T+ C +E T + + L
Sbjct: 120 DDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFI 179
Query: 194 NDYC 197
N
Sbjct: 180 NQEV 183
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 106 bits (264), Expect = 3e-28
Identities = 67/198 (33%), Positives = 95/198 (47%), Gaps = 30/198 (15%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL GL+NLGNTC++NSILQCLSNT LR+Y + S L EEF +
Sbjct: 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61
Query: 81 LWAGDSR-YFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLK 139
+W SP +FK + + F GY QQD+ EFL L+D LH ++
Sbjct: 62 IWTSSPNDVVSPSEFKTQI----------QRYAPRFVGYNQQDAQEFLRFLLDGLHNEVN 111
Query: 140 -------------------ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSST 180
E G + W ++ ++ S I +LF GQLKS++ C +C S+
Sbjct: 112 RVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTV 171
Query: 181 FEVFSNVSLPLPSNDYCS 198
F+ F ++SLP+ Y
Sbjct: 172 FDPFWDLSLPIAKRGYPE 189
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 97.2 bits (240), Expect = 1e-24
Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 22/184 (11%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFV----TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
G KN+GNTCY+N+ LQ L + LR+ + ++ + A + ++ E + F
Sbjct: 8 GFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFE 67
Query: 80 MLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLK 139
L + P + K + + Y+QQD+ E T L ++
Sbjct: 68 NLQNKSFKSVLPVVLL---NTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSI--- 121
Query: 140 ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYCSL 199
SE F Q K+T+ + E S+ L + +
Sbjct: 122 ------------VFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNF 169
Query: 200 RVSF 203
+
Sbjct: 170 MRNG 173
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 90.5 bits (223), Expect = 2e-22
Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 28/178 (15%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
G GLKN G TCY+NS+LQ L T+ LR+ M +S + Q +F
Sbjct: 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAV-----YMMPTEGDDSSKSVPLALQRVFY 58
Query: 80 MLWAGDSRYFSPQKFKVKHELVGKFKEEVGKMKRTFRGYEQQDSHEFLTILIDTLHEDLK 139
L D + + K T + Q D E +L+D + +K
Sbjct: 59 ELQHSDKPVGTKKLTKSFG-------------WETLDSFMQHDVQELCRVLLDNVENKMK 105
Query: 140 ESGEKSWGEFRKKNKSIISELFYGQLKSTVICCNCQETSSTFEVFSNVSLPLPSNDYC 197
+ + I +LF G++ S + C S E + ++ L +
Sbjct: 106 GTCVEGT----------IPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNI 153
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli
[TaxId: 562]}
Length = 69
Score = 27.0 bits (60), Expect = 0.42
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 15/64 (23%)
Query: 98 HELVGKFKEEVGKM----KRTFRGYEQQDSHEFLTILIDTLHE---DLKESGEKSWGEFR 150
+ GK KE+ GK+ G Q L+ + E K+ EK ++
Sbjct: 11 KQFKGKVKEQWGKLTDDDMTIIEGKRDQ--------LVGKIQERYGYQKDQAEKEVVDWE 62
Query: 151 KKNK 154
+N+
Sbjct: 63 TRNE 66
>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 262
Score = 25.1 bits (54), Expect = 5.8
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 56 KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS 86
K +M AY ++ ++ +E +L GDS
Sbjct: 18 KWAMLTAYDYSTARIFDEAG--IPVLLVGDS 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 745,854
Number of extensions: 32547
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 10
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)