BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10712
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86T96|RN180_HUMAN E3 ubiquitin-protein ligase RNF180 OS=Homo sapiens GN=RNF180 PE=2
SV=2
Length = 592
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MSDWMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKIDIQ 59
+ +W+ +++ + KL CP C LG F++VS KC C Q + +HL KS+ D Q
Sbjct: 67 LPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQ--LAAVHLSKSRTDYQ 123
>sp|Q5RAK3|RN180_PONAB E3 ubiquitin-protein ligase RNF180 OS=Pongo abelii GN=RNF180 PE=2
SV=1
Length = 592
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MSDWMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKIDIQ 59
+ +W+ +++ + KL CP C LG F++VS KC C Q + +HL KS+ D Q
Sbjct: 67 LPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQ--LAAVHLSKSRTDYQ 123
>sp|Q3U827|RN180_MOUSE E3 ubiquitin-protein ligase RNF180 OS=Mus musculus GN=Rnf180 PE=1
SV=2
Length = 592
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1 MSDWMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKIDIQY 60
+ +W+ +++ + KL CP C LG F++VS KC C Q + +HL KS+ D Q
Sbjct: 68 LPEWISCLLQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQ--LAAVHLCKSRTDHQA 125
Query: 61 A 61
A
Sbjct: 126 A 126
>sp|Q02256|PVH1_YEAST Tyrosine-protein phosphatase YVH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YVH1 PE=1 SV=1
Length = 364
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 4 WMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKID 57
WM+ ++ L+ K CP CS+ +G +++ G +C C + +P IHL SK+D
Sbjct: 290 WMQPELQGKQELEGKFSCPGCSSKVGGYNW-KGSRCSCGKWVIPAIHLQTSKVD 342
>sp|O13632|PVH1_SCHPO Tyrosine-protein phosphatase yvh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=yvh1 PE=3 SV=1
Length = 330
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 4 WMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKID 57
WM+ +E GN L+ + CP C++ +G++ + G +C C Q P + +++S++D
Sbjct: 273 WMQPELELGN-LEGRFDCPKCNSKIGSYKW-QGLQCSCLQWVCPALSILQSRVD 324
>sp|Q9JIM4|DUS12_RAT Dual specificity protein phosphatase 12 OS=Rattus norvegicus
GN=Dusp12 PE=2 SV=1
Length = 339
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 4 WMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKID 57
WM +A+ + +L CP CS LG+F++ G +C C + P + K+++D
Sbjct: 274 WMESALL--GVMDGQLLCPKCSAKLGSFNWY-GEQCSCGRWITPAFQIHKNRVD 324
>sp|Q9UNI6|DUS12_HUMAN Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12
PE=1 SV=1
Length = 340
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 4 WMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKID 57
WM +A+ + +L CP CS LG+F++ G +C C + P + K+++D
Sbjct: 275 WMESALL--GVMDGQLLCPKCSAKLGSFNWY-GEQCSCGRWITPAFQIHKNRVD 325
>sp|Q9D0T2|DUS12_MOUSE Dual specificity protein phosphatase 12 OS=Mus musculus GN=Dusp12
PE=2 SV=1
Length = 339
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 4 WMRTAVEEGNFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKID 57
WM + + + +L CP CS LG+F++ G +C C + P + K+++D
Sbjct: 274 WMESTLL--GVMDGQLLCPKCSAKLGSFNWY-GEQCSCGRWITPAFQIHKNRVD 324
>sp|Q54T76|DUSP4_DICDI Probable dual specificity protein phosphatase DDB_G0281963
OS=Dictyostelium discoideum GN=DDB_G0281963 PE=3 SV=1
Length = 394
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 15 LKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCVPFIHLVKSKID 57
++ KL CP+C+ LG++ + SG +C C P + K+++D
Sbjct: 347 MEGKLFCPSCNEKLGSWSW-SGEQCSCGAWIAPSFQIPKTRVD 388
>sp|P43012|TOP1_HAEIN DNA topoisomerase 1 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=topA PE=3 SV=1
Length = 868
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 3 DWMRTAVEEGNFLKDKLKCPNCSTNL-------GAFDYVSGHKCPCKQQCVPFIHLV 52
D + + + ++ +KCP C N+ G F +G+ P K++C I+L+
Sbjct: 587 DELEGGMRPNSLVETDIKCPTCGRNMAIRTASTGVFLGCTGYALPPKERCKTTINLI 643
>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo sapiens GN=REST PE=1
SV=3
Length = 1097
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 7 TAVEEGNFLKDKLKCPNCSTNLGAFDYVSGH 37
+ EEG+F K ++C C N +D+ + H
Sbjct: 204 STAEEGDFSKGPIRCDRCGYNTNRYDHYTAH 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,989,302
Number of Sequences: 539616
Number of extensions: 878379
Number of successful extensions: 1714
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 14
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)