Query psy10712
Match_columns 75
No_of_seqs 102 out of 225
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 16:42:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q87_A Putative uncharacterize 79.7 0.67 2.3E-05 30.8 1.3 16 12-27 93-108 (125)
2 3h0g_L DNA-directed RNA polyme 73.5 2.7 9.1E-05 24.9 2.6 28 17-45 20-48 (63)
3 3flo_B DNA polymerase alpha ca 65.7 2.3 7.8E-05 29.9 1.3 31 16-47 20-61 (206)
4 2k2d_A Ring finger and CHY zin 65.7 3.8 0.00013 24.8 2.2 30 16-46 35-66 (79)
5 3mjh_B Early endosome antigen 64.2 2.1 7.1E-05 22.6 0.7 17 15-32 3-19 (34)
6 2jrp_A Putative cytoplasmic pr 64.2 7 0.00024 24.1 3.2 36 19-61 32-71 (81)
7 2ehe_A Four and A half LIM dom 62.1 5.7 0.0002 22.5 2.4 26 16-47 1-27 (82)
8 2cuq_A Four and A half LIM dom 61.7 6.6 0.00023 22.0 2.6 26 17-48 2-28 (80)
9 2kpi_A Uncharacterized protein 61.2 2.4 8.4E-05 24.1 0.7 27 15-43 7-36 (56)
10 1gh9_A 8.3 kDa protein (gene M 59.2 2.6 8.9E-05 25.3 0.6 26 19-45 5-30 (71)
11 1r79_A Diacylglycerol kinase, 58.4 3.2 0.00011 25.4 0.9 33 13-45 29-66 (84)
12 3j21_g 50S ribosomal protein L 57.2 5.4 0.00019 22.6 1.7 26 15-44 11-37 (51)
13 4esj_A Type-2 restriction enzy 55.6 2.4 8.2E-05 31.4 -0.0 31 13-43 29-64 (257)
14 1wfh_A Zinc finger (AN1-like) 55.2 5.1 0.00017 23.9 1.4 27 15-45 12-38 (64)
15 2egq_A FHL1 protein; LIM domai 55.0 14 0.00046 20.5 3.2 25 17-47 2-27 (77)
16 3lpe_B DNA-directed RNA polyme 53.7 3.1 0.00011 24.2 0.2 16 20-37 15-30 (59)
17 2jvx_A NF-kappa-B essential mo 53.5 5.1 0.00017 20.2 1.0 13 18-30 3-15 (28)
18 1qf8_A Casein kinase II; casei 53.4 4.8 0.00016 28.0 1.2 12 15-26 131-142 (182)
19 2aus_D NOP10, ribosome biogene 52.4 8.8 0.0003 22.5 2.1 21 19-45 6-27 (60)
20 2zkr_2 60S ribosomal protein L 51.3 7.6 0.00026 24.9 1.8 31 16-52 14-45 (97)
21 1pft_A TFIIB, PFTFIIBN; N-term 50.9 4.6 0.00016 21.7 0.6 28 17-45 4-34 (50)
22 1x3h_A Leupaxin; paxillin fami 50.2 16 0.00056 20.3 3.0 25 17-47 2-27 (80)
23 2pk7_A Uncharacterized protein 50.2 5 0.00017 23.7 0.8 28 15-43 5-34 (69)
24 2hf1_A Tetraacyldisaccharide-1 50.0 5.3 0.00018 23.6 0.9 28 15-43 5-34 (68)
25 1wfl_A Zinc finger protein 216 49.6 5.9 0.0002 24.2 1.1 25 17-45 24-48 (74)
26 2apo_B Ribosome biogenesis pro 49.4 12 0.00043 21.8 2.4 21 19-45 7-28 (60)
27 2jr6_A UPF0434 protein NMA0874 49.3 5.4 0.00019 23.5 0.8 28 15-43 5-34 (68)
28 1iym_A EL5; ring-H2 finger, ub 48.2 5.4 0.00018 20.7 0.6 15 14-28 39-53 (55)
29 2cup_A Skeletal muscle LIM-pro 48.1 6.8 0.00023 22.9 1.1 27 16-48 52-79 (101)
30 2js4_A UPF0434 protein BB2007; 47.9 5.7 0.00019 23.6 0.8 28 15-43 5-34 (70)
31 1wg2_A Zinc finger (AN1-like) 47.8 7.3 0.00025 23.1 1.2 26 16-45 13-38 (64)
32 1twf_L ABC10-alpha, DNA-direct 47.4 4.9 0.00017 23.9 0.4 9 19-27 29-37 (70)
33 4dgl_A Casein kinase II subuni 47.0 6.9 0.00023 28.0 1.2 12 15-26 131-142 (215)
34 2ecv_A Tripartite motif-contai 44.8 7.4 0.00025 21.5 0.9 15 16-30 57-71 (85)
35 2jny_A Uncharacterized BCR; st 43.9 7.5 0.00026 22.9 0.9 28 15-43 7-36 (67)
36 3u31_A SIR2A, transcriptional 43.9 15 0.00052 26.6 2.7 35 16-53 152-199 (290)
37 3bvo_A CO-chaperone protein HS 42.8 15 0.00053 25.2 2.5 44 17-66 9-53 (207)
38 1wff_A Riken cDNA 2810002D23 p 42.1 9.9 0.00034 23.7 1.2 27 16-45 23-49 (85)
39 1hxr_A Guanine nucleotide exch 41.3 8 0.00027 24.9 0.8 19 13-31 7-25 (115)
40 3cng_A Nudix hydrolase; struct 40.4 9.1 0.00031 24.6 0.9 10 20-29 5-14 (189)
41 1m2k_A Silent information regu 39.8 21 0.0007 24.9 2.8 38 16-56 119-163 (249)
42 2k4x_A 30S ribosomal protein S 39.6 9 0.00031 21.6 0.7 26 17-43 17-44 (55)
43 1ma3_A SIR2-AF2, transcription 39.3 16 0.00055 25.5 2.1 38 16-56 121-169 (253)
44 1faq_A RAF-1; transferase, ser 39.3 10 0.00035 20.1 0.9 24 17-45 13-37 (52)
45 1x63_A Skeletal muscle LIM-pro 37.1 23 0.00077 19.8 2.2 25 18-48 3-28 (82)
46 2dlo_A Thyroid receptor-intera 36.9 34 0.0012 19.1 3.0 25 16-47 2-27 (81)
47 2ecm_A Ring finger and CHY zin 35.8 6.9 0.00024 20.2 -0.2 12 18-29 43-54 (55)
48 2i5o_A DNA polymerase ETA; zin 34.7 17 0.00059 19.3 1.3 15 16-30 7-21 (39)
49 2e72_A POGO transposable eleme 34.1 13 0.00045 21.1 0.8 13 16-28 10-22 (49)
50 1s5p_A NAD-dependent deacetyla 34.1 22 0.00074 24.6 2.1 33 16-51 111-150 (235)
51 1chc_A Equine herpes virus-1 r 33.8 11 0.00037 20.3 0.4 12 19-30 41-52 (68)
52 1yc5_A NAD-dependent deacetyla 33.6 19 0.00065 25.0 1.7 38 16-56 119-166 (246)
53 3j20_Y 30S ribosomal protein S 33.5 16 0.00055 20.2 1.1 11 17-27 18-28 (50)
54 1ryq_A DNA-directed RNA polyme 33.3 8 0.00027 23.3 -0.2 14 20-33 25-38 (69)
55 2xeu_A Ring finger protein 4; 33.2 9.4 0.00032 20.0 0.1 16 15-30 41-56 (64)
56 2lcq_A Putative toxin VAPC6; P 32.8 14 0.00046 24.0 0.8 10 19-28 149-158 (165)
57 4ayc_A E3 ubiquitin-protein li 32.7 16 0.00055 22.8 1.2 19 14-32 83-101 (138)
58 1rfh_A RAS association (ralgds 32.4 18 0.00062 20.1 1.2 26 16-45 20-46 (59)
59 3ng2_A RNF4, snurf, ring finge 32.1 10 0.00035 20.5 0.1 17 14-30 47-63 (71)
60 2ect_A Ring finger protein 126 32.0 11 0.00039 20.8 0.3 12 19-30 53-64 (78)
61 3eqt_A ATP-dependent RNA helic 31.7 8.4 0.00029 26.0 -0.4 29 15-43 66-94 (145)
62 2ea6_A Ring finger protein 4; 31.6 9.4 0.00032 20.3 -0.1 16 14-29 52-67 (69)
63 1wfp_A Zinc finger (AN1-like) 31.5 16 0.00055 22.2 1.0 28 15-46 22-49 (74)
64 2j6a_A Protein TRM112; transla 31.2 21 0.00072 23.9 1.6 14 13-26 104-117 (141)
65 1x4j_A Ring finger protein 38; 31.0 10 0.00035 21.0 0.0 17 14-30 56-72 (75)
66 2d8s_A Cellular modulator of i 30.7 12 0.0004 22.1 0.2 12 17-28 57-68 (80)
67 2con_A RUH-035 protein, NIN on 30.6 14 0.00048 22.5 0.6 12 16-27 28-39 (79)
68 2riq_A Poly [ADP-ribose] polym 30.4 11 0.00037 25.8 0.0 28 15-46 74-102 (160)
69 2fnf_X Putative RAS effector N 30.4 20 0.00069 20.8 1.2 25 17-45 34-59 (72)
70 1wd2_A Ariadne-1 protein homol 30.4 26 0.00088 19.8 1.7 25 19-43 7-34 (60)
71 1qyp_A RNA polymerase II; tran 30.2 21 0.00073 19.5 1.3 15 18-32 15-29 (57)
72 4ayb_P DNA-directed RNA polyme 29.5 16 0.00056 20.7 0.7 12 17-28 22-33 (48)
73 2y43_A E3 ubiquitin-protein li 29.4 17 0.00057 21.2 0.8 16 15-30 54-69 (99)
74 1vfy_A Phosphatidylinositol-3- 28.8 24 0.00082 20.2 1.4 29 14-45 8-37 (73)
75 2ecy_A TNF receptor-associated 28.6 16 0.00056 19.6 0.6 14 16-29 48-61 (66)
76 1vq8_1 50S ribosomal protein L 28.5 14 0.00049 21.5 0.3 18 16-33 30-51 (57)
77 2kiz_A E3 ubiquitin-protein li 28.2 11 0.00039 20.3 -0.2 11 19-29 52-62 (69)
78 2ecw_A Tripartite motif-contai 28.0 21 0.00072 19.5 1.0 14 16-29 57-70 (85)
79 1tfi_A Transcriptional elongat 27.3 22 0.00076 19.5 1.0 17 15-31 6-22 (50)
80 1iml_A CRIP, cysteine rich int 27.3 12 0.00041 20.8 -0.2 26 16-47 46-73 (76)
81 2ep4_A Ring finger protein 24; 26.4 13 0.00045 20.3 -0.1 16 18-33 52-67 (74)
82 1g25_A CDK-activating kinase a 26.1 17 0.00057 19.5 0.3 15 16-30 41-55 (65)
83 1vyx_A ORF K3, K3RING; zinc-bi 25.8 16 0.00055 20.3 0.2 12 17-28 46-57 (60)
84 2l0b_A E3 ubiquitin-protein li 25.8 19 0.00064 20.9 0.5 15 14-28 73-87 (91)
85 3p8b_A DNA-directed RNA polyme 25.7 13 0.00044 23.0 -0.2 17 20-37 37-53 (81)
86 1kbe_A Kinase suppressor of RA 25.7 18 0.00061 19.9 0.4 20 19-43 15-35 (49)
87 1dvp_A HRS, hepatocyte growth 25.5 28 0.00096 23.6 1.4 31 13-46 157-188 (220)
88 2ecl_A Ring-box protein 2; RNF 25.3 21 0.00071 20.4 0.6 16 14-29 60-75 (81)
89 2ysl_A Tripartite motif-contai 24.8 25 0.00085 19.0 0.9 14 16-29 55-68 (73)
90 4b6d_A RAC GTPase-activating p 24.7 12 0.00042 21.2 -0.4 27 17-45 18-45 (61)
91 1v87_A Deltex protein 2; ring- 24.7 23 0.00079 20.9 0.8 16 16-31 80-95 (114)
92 2djb_A Polycomb group ring fin 24.5 15 0.00051 20.2 -0.1 16 16-31 48-63 (72)
93 1m3v_A FLIN4, fusion of the LI 24.5 8.7 0.0003 23.6 -1.2 13 38-50 71-84 (122)
94 3uej_A NPKC-delta, protein kin 24.4 20 0.00068 19.9 0.4 26 18-44 20-46 (65)
95 2yw8_A RUN and FYVE domain-con 24.3 29 0.00099 20.3 1.2 31 13-45 12-45 (82)
96 3j21_e 50S ribosomal protein L 24.0 20 0.00068 21.2 0.4 23 18-43 17-40 (62)
97 1zfo_A LAsp-1; LIM domain, zin 23.8 33 0.0011 16.7 1.1 13 36-48 3-16 (31)
98 1l8d_A DNA double-strand break 23.8 25 0.00085 21.2 0.8 11 19-29 48-58 (112)
99 3pfq_A PKC-B, PKC-beta, protei 23.8 28 0.00097 27.0 1.3 26 19-45 114-140 (674)
100 1odh_A MGCM1; transcription fa 23.1 25 0.00086 24.6 0.8 30 16-53 109-140 (174)
101 1pvm_A Conserved hypothetical 22.8 16 0.00053 23.0 -0.3 13 15-27 166-178 (184)
102 2d8t_A Dactylidin, ring finger 22.7 29 0.00098 18.9 0.9 17 14-30 45-61 (71)
103 3iz5_l 60S ribosomal protein L 22.6 24 0.00081 22.5 0.5 8 26-33 42-49 (94)
104 1x4s_A Protein FON, zinc finge 22.5 31 0.001 20.1 1.0 14 15-28 23-36 (59)
105 1weo_A Cellulose synthase, cat 22.3 26 0.00087 22.3 0.7 15 15-29 55-69 (93)
106 1t1h_A Gspef-atpub14, armadill 22.2 31 0.001 19.0 0.9 14 17-30 42-55 (78)
107 2k1p_A Zinc finger RAN-binding 21.5 58 0.002 16.2 1.9 23 17-43 5-28 (33)
108 2xqn_T Testin, TESS; metal-bin 21.3 10 0.00036 23.0 -1.3 13 36-48 63-76 (126)
109 4ap4_A E3 ubiquitin ligase RNF 21.0 25 0.00084 20.8 0.4 17 14-30 44-60 (133)
110 2l0z_A Glycoprotein G2; zinc-b 20.7 33 0.0011 18.9 0.8 13 36-48 21-33 (42)
111 1x68_A FHL5 protein; four-and- 20.7 40 0.0014 18.6 1.2 14 15-28 53-66 (76)
112 3u50_C Telomerase-associated p 20.5 32 0.0011 23.4 0.9 28 19-48 43-72 (172)
113 1wig_A KIAA1808 protein; LIM d 20.4 15 0.00051 20.5 -0.7 19 15-33 50-68 (73)
114 3cc2_Z 50S ribosomal protein L 20.4 32 0.0011 22.5 0.8 27 15-45 57-88 (116)
115 1ptq_A Protein kinase C delta 20.4 27 0.00094 18.1 0.4 26 18-44 11-37 (50)
116 1x4w_A Hypothetical protein FL 20.2 10 0.00036 22.6 -1.4 29 16-45 13-41 (67)
117 1vq8_Z 50S ribosomal protein L 20.0 35 0.0012 20.7 0.9 11 16-26 25-35 (83)
No 1
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=79.65 E-value=0.67 Score=30.77 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=13.2
Q ss_pred CccccceeeCCCCCCc
Q psy10712 12 GNFLKDKLKCPNCSTN 27 (75)
Q Consensus 12 ~~~~~GKL~CP~C~aK 27 (75)
-+..+|+|.||+|+-.
T Consensus 93 ~~V~EG~L~Cp~cgr~ 108 (125)
T 3q87_A 93 IDVVEGSLRCDMCGLI 108 (125)
T ss_dssp EEEEEEEEEETTTCCE
T ss_pred eEEEEEEEECCCCCCE
Confidence 4567999999999864
No 2
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=73.48 E-value=2.7 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
=+-.|..|++.+---.- ...+|. ||..|
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCcEE
Confidence 34679999998864333 689995 99998
No 3
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=65.75 E-value=2.3 Score=29.95 Aligned_cols=31 Identities=32% Similarity=0.827 Sum_probs=20.2
Q ss_pred cceeeCCCCCCc--------cce--eecCCCCCCC-CCCcccc
Q psy10712 16 KDKLKCPNCSTN--------LGA--FDYVSGHKCP-CKQQCVP 47 (75)
Q Consensus 16 ~GKL~CP~C~aK--------LGs--f~wv~G~kCs-CG~~v~P 47 (75)
.=+|.||.|++. .+. ..+ +|.+|+ |+.-+.|
T Consensus 20 ~l~l~Cp~C~~~~~F~gv~~~~~~~~~~-sg~~C~~C~~~~~~ 61 (206)
T 3flo_B 20 TLELSCPSCDKRFPFGGIVSSNYYRVSY-NGLQCKHCEQLFTP 61 (206)
T ss_dssp CEEEECTTTCCEEEECSSSCCSSEEEET-TEEEETTTCCBCCH
T ss_pred eeEEECCCCCCccCCCCcccCCCccccc-ccccCCCCCCcCCH
Confidence 347899999751 112 455 788884 8886543
No 4
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=65.73 E-value=3.8 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.587 Sum_probs=23.8
Q ss_pred cceeeCCCCCCccc-eeecCCCCCCC-CCCccc
Q psy10712 16 KDKLKCPNCSTNLG-AFDYVSGHKCP-CKQQCV 46 (75)
Q Consensus 16 ~GKL~CP~C~aKLG-sf~wv~G~kCs-CG~~v~ 46 (75)
.-.|.|..|+++-= .|.| -|.+|+ ||.+-|
T Consensus 35 ~v~I~CnDC~~~s~v~~h~-lg~kC~~C~SyNT 66 (79)
T 2k2d_A 35 TVDILCNDCNGRSTVQFHI-LGMKCKICESYNT 66 (79)
T ss_dssp EEEEEESSSCCEEEEECCT-TCCCCTTTSCCCE
T ss_pred EeEEECCCCCCCccCCcee-ecccCcCCCCcCe
Confidence 45689999999854 6777 599997 999864
No 5
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=64.20 E-value=2.1 Score=22.56 Aligned_cols=17 Identities=35% Similarity=0.864 Sum_probs=14.0
Q ss_pred ccceeeCCCCCCccceee
Q psy10712 15 LKDKLKCPNCSTNLGAFD 32 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~ 32 (75)
.+| ..||-|...|++++
T Consensus 3 ~EG-FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEG-FICPQCMKSLGSAD 19 (34)
T ss_dssp SEE-EECTTTCCEESSHH
T ss_pred Ccc-cCCcHHHHHcCCHH
Confidence 466 88999999998864
No 6
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.19 E-value=7 Score=24.13 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=21.6
Q ss_pred eeCCCCCCccceeecCCC---CCCC-CCCcccceEEEEcCccceeec
Q psy10712 19 LKCPNCSTNLGAFDYVSG---HKCP-CKQQCVPFIHLVKSKIDIQYA 61 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G---~kCs-CG~~v~Paf~i~kSkVD~~~~ 61 (75)
-.||-|++.|....= -| .=|+ |+..| .|+||...+.
T Consensus 32 afCPeCgq~Le~lkA-CGA~~yFC~~C~~Li------Skkrv~f~~~ 71 (81)
T 2jrp_A 32 ALCPDCRQPLQVLKA-CGAVDYFCQNGHGLI------SKKRVNFVIS 71 (81)
T ss_dssp EECSSSCSCCCEEEE-TTEEEECCTTTTCCC------CTTSSEEEEC
T ss_pred ccCcchhhHHHHHHh-cCCcCeeeccCCCEe------ecceEEEEec
Confidence 378888888854322 12 1243 66654 6888876654
No 7
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.09 E-value=5.7 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=14.3
Q ss_pred cceeeCCCCCCccceeecCCCCCCC-CCCcccc
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCP-CKQQCVP 47 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~P 47 (75)
+|+++|..|-.++ + +.+|. |++-|.|
T Consensus 1 ~g~~yC~~~y~~~----~--~~~C~~C~~~I~~ 27 (82)
T 2ehe_A 1 GSSGSSGPCYDNT----F--ANTCAECQQLIGH 27 (82)
T ss_dssp CCCCCCCCCCCCC----C--SCBCTTTCCBCCS
T ss_pred CCceechhHhCcc----c--CCcCccCCCcccc
Confidence 3566666665554 1 34564 6666654
No 8
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.75 E-value=6.6 Score=22.03 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=16.6
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCCcccce
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQQCVPF 48 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~Pa 48 (75)
|+++|..|-.++ + +.+|. |++-|.+.
T Consensus 2 g~~yC~~cy~~~----~--~~~C~~C~~~I~~~ 28 (80)
T 2cuq_A 2 SSGSSGPCYENK----F--APRCARCSKTLTQG 28 (80)
T ss_dssp CCCSCCCCCCCC----S--SCCCTTTCCCCCSC
T ss_pred CcEEcHHHHccc----c--CCcCCCCCCEecCc
Confidence 667777776664 2 35664 77776654
No 9
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=61.24 E-value=2.4 Score=24.11 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=19.6
Q ss_pred ccceeeCCCCCCccceeecCCCCCCC---CCC
Q psy10712 15 LKDKLKCPNCSTNLGAFDYVSGHKCP---CKQ 43 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv~G~kCs---CG~ 43 (75)
+-.-|.||.|+++| .|+- ....|+ ||.
T Consensus 7 lL~iL~CP~c~~~L-~~~~-~~L~C~~~~c~~ 36 (56)
T 2kpi_A 7 LLEILACPACHAPL-EERD-AELICTGQDCGL 36 (56)
T ss_dssp CTTSCCCSSSCSCE-EEET-TEEEECSSSCCC
T ss_pred HHhheeCCCCCCcc-eecC-CEEEcCCcCCCc
Confidence 44568999999998 4554 566776 765
No 10
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=59.20 E-value=2.6 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=14.6
Q ss_pred eeCCCCCCccceeecCCCCCCCCCCcc
Q psy10712 19 LKCPNCSTNLGAFDYVSGHKCPCKQQC 45 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G~kCsCG~~v 45 (75)
+-|| |+.-+=.=.-..-.+|+||.-+
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~CG~~~ 30 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCVCGRTV 30 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEETTTEEE
T ss_pred EECC-CCCEEEEcCCCcEEECCCCCee
Confidence 5688 8765311111112689999844
No 11
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=58.40 E-value=3.2 Score=25.45 Aligned_cols=33 Identities=27% Similarity=0.675 Sum_probs=24.9
Q ss_pred cccccee----eCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 13 NFLKDKL----KCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 13 ~~~~GKL----~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
+|++|.| .|-.|+..+|++.=.+|.+|. |+..|
T Consensus 29 ~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~V 66 (84)
T 1r79_A 29 QWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMV 66 (84)
T ss_dssp CEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEE
T ss_pred eEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhH
Confidence 5778877 566699999976544888997 87654
No 12
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.21 E-value=5.4 Score=22.62 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=20.1
Q ss_pred ccceeeCCCCCCccceeecCCCCCCC-CCCc
Q psy10712 15 LKDKLKCPNCSTNLGAFDYVSGHKCP-CKQQ 44 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~ 44 (75)
+..+-.||+|+++++.=.| +|. ||.-
T Consensus 11 ~~~k~iCpkC~a~~~~gaw----~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAK----KCRKCGYK 37 (51)
T ss_dssp SSSEEECTTTCCEECTTCS----SCSSSSSC
T ss_pred HhCCccCCCCCCcCCCCce----ecCCCCCc
Confidence 5678899999999887667 453 7864
No 13
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=55.60 E-value=2.4 Score=31.38 Aligned_cols=31 Identities=29% Similarity=0.805 Sum_probs=20.8
Q ss_pred ccccceeeCCCCCC-ccceeec---CCCCCC-CCCC
Q psy10712 13 NFLKDKLKCPNCST-NLGAFDY---VSGHKC-PCKQ 43 (75)
Q Consensus 13 ~~~~GKL~CP~C~a-KLGsf~w---v~G~kC-sCG~ 43 (75)
.|+....+||+|++ +|-.|-= |....| +|+.
T Consensus 29 ~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~E 64 (257)
T 4esj_A 29 DWVYRQSYCPNCGNNPLNHFENNRPVADFYCNHCSE 64 (257)
T ss_dssp HHHHHHCCCTTTCCSSCEEC----CCCEEECTTTCC
T ss_pred HHHHHCCcCCCCCChhhhhccCCCcccccccCCcch
Confidence 58999999999999 5766643 122345 3766
No 14
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=55.20 E-value=5.1 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.670 Sum_probs=21.3
Q ss_pred ccceeeCCCCCCccceeecCCCCCCCCCCcc
Q psy10712 15 LKDKLKCPNCSTNLGAFDYVSGHKCPCKQQC 45 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv~G~kCsCG~~v 45 (75)
...+..|..|+.||| . .+.+|.||...
T Consensus 12 k~~~~rC~~C~kkvg---l-~~f~CrCg~~F 38 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVG---L-TGFMCRCGTTF 38 (64)
T ss_dssp CSSCCCCTTTCCCCC---T-TCEECSSSCEE
T ss_pred CCcCCcChhhCCccC---c-cCEEeecCCEe
Confidence 346778999999999 3 47899998764
No 15
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=55.04 E-value=14 Score=20.51 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=16.4
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCCcccc
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQQCVP 47 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~P 47 (75)
++++|..|-.++ + +.+|. |++-|.|
T Consensus 2 ~~~yC~~cy~~~----~--~~~C~~C~~~I~~ 27 (77)
T 2egq_A 2 SSGSSGDCYKNF----V--AKKCAGCKNPITG 27 (77)
T ss_dssp CSSCCTTCCCSC----C--CCCCSSSCCCCCC
T ss_pred CCeEchhHhchh----h--CccCcccCCcccC
Confidence 467777777665 2 45675 7777775
No 16
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=53.72 E-value=3.1 Score=24.22 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=12.5
Q ss_pred eCCCCCCccceeecCCCC
Q psy10712 20 KCPNCSTNLGAFDYVSGH 37 (75)
Q Consensus 20 ~CP~C~aKLGsf~wv~G~ 37 (75)
.||+|+.-= +-|| .|+
T Consensus 15 ~CpnC~~~t-t~~~-~G~ 30 (59)
T 3lpe_B 15 ICPICHSPT-SENW-IGL 30 (59)
T ss_dssp BCTTTCCBE-ESCE-ECE
T ss_pred CCCCCCCCc-cCCE-eeE
Confidence 499999866 8888 664
No 17
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=53.54 E-value=5.1 Score=20.22 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.4
Q ss_pred eeeCCCCCCccce
Q psy10712 18 KLKCPNCSTNLGA 30 (75)
Q Consensus 18 KL~CP~C~aKLGs 30 (75)
|..||.|++.+-.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 6889999987654
No 18
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=53.39 E-value=4.8 Score=28.01 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=9.9
Q ss_pred ccceeeCCCCCC
Q psy10712 15 LKDKLKCPNCST 26 (75)
Q Consensus 15 ~~GKL~CP~C~a 26 (75)
..=||+||+|+.
T Consensus 131 ~~VKlyCP~C~D 142 (182)
T 1qf8_A 131 AMVKLYCPKCMD 142 (182)
T ss_dssp CBCEEECTTTCC
T ss_pred CceEEECCCccc
Confidence 456999999976
No 19
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=52.44 E-value=8.8 Score=22.49 Aligned_cols=21 Identities=38% Similarity=1.190 Sum_probs=16.7
Q ss_pred eeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 19 LKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
-.||+| |.|.. -..|+ ||.-.
T Consensus 6 r~C~~C----g~YTL--k~~CP~CG~~t 27 (60)
T 2aus_D 6 RKCPKC----GRYTL--KETCPVCGEKT 27 (60)
T ss_dssp EECTTT----CCEES--SSBCTTTCSBC
T ss_pred eECCCC----CCEEc--cccCcCCCCcc
Confidence 369999 88888 57899 99754
No 20
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=51.28 E-value=7.6 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=21.2
Q ss_pred cceeeCCCCCCccceeecCCCCCCC-CCCcccceEEEE
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCP-CKQQCVPFIHLV 52 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~Paf~i~ 52 (75)
.-.+.||.|+.+ +|.- +-..|. ||. |++.+.
T Consensus 14 KtH~lCrRCG~~--sfH~-qK~~CgkCGY---pa~k~R 45 (97)
T 2zkr_2 14 KTHTLCRRCGSK--AYHL-QKSTCGKCGY---PAKRKR 45 (97)
T ss_dssp CCEECCTTTCSS--CEET-TSCCBTTTCT---TTSSCC
T ss_pred CCCCcCCCCCCc--cCcC-ccccCcccCC---chHhcc
Confidence 345789999887 7744 777885 886 555443
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=50.95 E-value=4.6 Score=21.68 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=18.7
Q ss_pred ceeeCCCCCC-ccceeecC-CCCCCC-CCCcc
Q psy10712 17 DKLKCPNCST-NLGAFDYV-SGHKCP-CKQQC 45 (75)
Q Consensus 17 GKL~CP~C~a-KLGsf~wv-~G~kCs-CG~~v 45 (75)
..+.||+|++ .| .|+-- ....|. ||.-+
T Consensus 4 ~~~~CP~C~~~~l-~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAEL-IYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCE-EEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcce-EEcCCCCeEECcccCCcc
Confidence 3578999998 66 56652 235774 88754
No 22
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.23 E-value=16 Score=20.29 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=14.8
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCCcccc
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQQCVP 47 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~P 47 (75)
|+++|..|-.++ .+.+|. |++-|.+
T Consensus 2 g~~yC~~~y~~~------~~~~C~~C~~~I~~ 27 (80)
T 1x3h_A 2 SSGSSGKDFLAM------FSPKCGGCNRPVLE 27 (80)
T ss_dssp CCCCCCCCCCCC------CSCBCTTTCCBCCS
T ss_pred CCccchhHHhhh------cCCccccCCCeecc
Confidence 566676666654 135664 6666654
No 23
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=50.23 E-value=5 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=17.3
Q ss_pred ccceeeCCCCCCccceeecC-CCCCCC-CCC
Q psy10712 15 LKDKLKCPNCSTNLGAFDYV-SGHKCP-CKQ 43 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv-~G~kCs-CG~ 43 (75)
+-.-|.||.|+++| .|+=. ....|. ||.
T Consensus 5 LLeiL~CP~ck~~L-~~~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 5 LLDILACPICKGPL-KLSADKTELISKGAGL 34 (69)
T ss_dssp GGGTCCCTTTCCCC-EECTTSSEEEETTTTE
T ss_pred HHhheeCCCCCCcC-eEeCCCCEEEcCCCCc
Confidence 33458999999988 34321 234573 765
No 24
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=50.00 E-value=5.3 Score=23.58 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=18.1
Q ss_pred ccceeeCCCCCCccceeecC-CCCCC-CCCC
Q psy10712 15 LKDKLKCPNCSTNLGAFDYV-SGHKC-PCKQ 43 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv-~G~kC-sCG~ 43 (75)
+-.-|.||.|++.| .|+=. ....| +||.
T Consensus 5 LL~iL~CP~ck~~L-~~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 5 FLEILVCPLCKGPL-VFDKSKDELICKGDRL 34 (68)
T ss_dssp CEEECBCTTTCCBC-EEETTTTEEEETTTTE
T ss_pred HhhheECCCCCCcC-eEeCCCCEEEcCCCCc
Confidence 44568999999988 44421 23567 4765
No 25
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=49.63 E-value=5.9 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.748 Sum_probs=19.7
Q ss_pred ceeeCCCCCCccceeecCCCCCCCCCCcc
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCPCKQQC 45 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCsCG~~v 45 (75)
.+..|..|+.|||- .|.+|.||...
T Consensus 24 ~~nRC~~CrKkvgL----~gf~CrCg~~F 48 (74)
T 1wfl_A 24 KKNRCFMCRKKVGL----TGFDCRCGNLF 48 (74)
T ss_dssp CTTBCSSSCCBCGG----GCEECTTSCEE
T ss_pred cCCcChhhCCcccc----cCeecCCCCEe
Confidence 45579999999994 37899999755
No 26
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=49.38 E-value=12 Score=21.76 Aligned_cols=21 Identities=38% Similarity=1.148 Sum_probs=16.6
Q ss_pred eeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 19 LKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
..||+| |.|.. ..+|+ ||.-.
T Consensus 7 r~C~~C----gvYTL--k~~CP~CG~~T 28 (60)
T 2apo_B 7 KKCPKC----GLYTL--KEICPKCGEKT 28 (60)
T ss_dssp EECTTT----CCEES--SSBCSSSCSBC
T ss_pred eeCCCC----CCEec--cccCcCCCCcC
Confidence 469999 78888 67898 99754
No 27
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=49.33 E-value=5.4 Score=23.53 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=17.6
Q ss_pred ccceeeCCCCCCccceeecC-CCCCC-CCCC
Q psy10712 15 LKDKLKCPNCSTNLGAFDYV-SGHKC-PCKQ 43 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv-~G~kC-sCG~ 43 (75)
+-.-|.||.|+..| .|+=. ....| +||.
T Consensus 5 LL~iL~CP~ck~~L-~~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 5 FLDILVCPVTKGRL-EYHQDKQELWSRQAKL 34 (68)
T ss_dssp SSCCCBCSSSCCBC-EEETTTTEEEETTTTE
T ss_pred HhhheECCCCCCcC-eEeCCCCEEEcCCCCc
Confidence 34558999999988 44421 23456 3665
No 28
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=48.18 E-value=5.4 Score=20.67 Aligned_cols=15 Identities=27% Similarity=0.755 Sum_probs=10.0
Q ss_pred cccceeeCCCCCCcc
Q psy10712 14 FLKDKLKCPNCSTNL 28 (75)
Q Consensus 14 ~~~GKL~CP~C~aKL 28 (75)
|.+.+..||-|.+.|
T Consensus 39 w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 39 WLGSHSTCPLCRLTV 53 (55)
T ss_dssp TTTTCCSCSSSCCCS
T ss_pred HHHcCCcCcCCCCEe
Confidence 444456788888765
No 29
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=48.10 E-value=6.8 Score=22.89 Aligned_cols=27 Identities=30% Similarity=0.640 Sum_probs=18.6
Q ss_pred cceeeCCCCCCccceeecCCCCCCC-CCCcccce
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCP-CKQQCVPF 48 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~Pa 48 (75)
+|+++|..|-.++ .+.+|. |++-|.|.
T Consensus 52 ~g~~yC~~cy~~~------~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 52 DNKILCNKCTTRE------DSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTEEECHHHHTTC------CCCBCSSSCCBCCSS
T ss_pred CCEEEChhHhhhh------cCCccccCCCccccC
Confidence 5666666665554 267886 99999875
No 30
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=47.95 E-value=5.7 Score=23.57 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=18.5
Q ss_pred ccceeeCCCCCCccceeecC-CCCCC-CCCC
Q psy10712 15 LKDKLKCPNCSTNLGAFDYV-SGHKC-PCKQ 43 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv-~G~kC-sCG~ 43 (75)
+-.-|.||.|++.| .|+=. ....| +||.
T Consensus 5 LL~iL~CP~ck~~L-~~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 5 LLDILVCPVCKGRL-EFQRAQAELVCNADRL 34 (70)
T ss_dssp CCCCCBCTTTCCBE-EEETTTTEEEETTTTE
T ss_pred HhhheECCCCCCcC-EEeCCCCEEEcCCCCc
Confidence 34558999999998 45431 24567 4775
No 31
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.78 E-value=7.3 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.793 Sum_probs=20.7
Q ss_pred cceeeCCCCCCccceeecCCCCCCCCCCcc
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCPCKQQC 45 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCsCG~~v 45 (75)
..+..|..|+.|||- .+.+|.||...
T Consensus 13 ~~~~rC~~C~kkvgl----~~f~CrCg~~F 38 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGV----MGFKCKCGSTF 38 (64)
T ss_dssp CCSCSCTTTCCCCTT----SCEECTTSCEE
T ss_pred CcCCcChhhCCcccc----cCeEeecCCEe
Confidence 456789999999983 37889999865
No 32
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=47.39 E-value=4.9 Score=23.92 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=5.4
Q ss_pred eeCCCCCCc
Q psy10712 19 LKCPNCSTN 27 (75)
Q Consensus 19 L~CP~C~aK 27 (75)
-.|++|+..
T Consensus 29 Y~C~~CG~~ 37 (70)
T 1twf_L 29 YICAECSSK 37 (70)
T ss_dssp EECSSSCCE
T ss_pred EECCCCCCc
Confidence 456666655
No 33
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=46.96 E-value=6.9 Score=28.03 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=9.6
Q ss_pred ccceeeCCCCCC
Q psy10712 15 LKDKLKCPNCST 26 (75)
Q Consensus 15 ~~GKL~CP~C~a 26 (75)
..=||+||+|+.
T Consensus 131 ~~VKlyCP~C~D 142 (215)
T 4dgl_A 131 AMVKLYCPKCMD 142 (215)
T ss_dssp CBEEEECTTTCC
T ss_pred cceeEeCCCccc
Confidence 356999999974
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.81 E-value=7.4 Score=21.53 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=11.0
Q ss_pred cceeeCCCCCCccce
Q psy10712 16 KDKLKCPNCSTNLGA 30 (75)
Q Consensus 16 ~GKL~CP~C~aKLGs 30 (75)
.++..||.|...+..
T Consensus 57 ~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 57 KGESSCPVCRISYQP 71 (85)
T ss_dssp TSCCCCTTTCCSSCS
T ss_pred CCCCcCCCCCCccCH
Confidence 346789988888753
No 35
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.92 E-value=7.5 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=18.3
Q ss_pred ccceeeCCCCCCccceeecC-CCCCCC-CCC
Q psy10712 15 LKDKLKCPNCSTNLGAFDYV-SGHKCP-CKQ 43 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv-~G~kCs-CG~ 43 (75)
+-.-|.||.|++.| .|+=. ....|. ||.
T Consensus 7 LLeiL~CP~ck~~L-~~~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 7 LLEVLACPKDKGPL-RYLESEQLLVNERLNL 36 (67)
T ss_dssp GTCCCBCTTTCCBC-EEETTTTEEEETTTTE
T ss_pred HHHHhCCCCCCCcC-eEeCCCCEEEcCCCCc
Confidence 44558999999998 45531 245664 664
No 36
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=43.88 E-value=15 Score=26.58 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=24.5
Q ss_pred cceeeCCCCCCccceeecC-------------CCCCCCCCCcccceEEEEc
Q psy10712 16 KDKLKCPNCSTNLGAFDYV-------------SGHKCPCKQQCVPFIHLVK 53 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv-------------~G~kCsCG~~v~Paf~i~k 53 (75)
-.+..|.+|+.+ |++- ..-.|+||..+.|.+-+.-
T Consensus 152 ~~~~~C~~C~~~---~~~~~~~~~~~~~~~~~~~P~C~Cgg~lrPdVV~FG 199 (290)
T 3u31_A 152 VFEAVCCTCNKI---VKLNKIMLQKTSHFMHQLPPECPCGGIFKPNIILFG 199 (290)
T ss_dssp EEEEEETTTCCE---EECCTGGGSTTSSTTTSSSCBCTTSCBEEEEECCBT
T ss_pred cCcceeCCCCCc---CChhHhhhcccccccccCCCCCCCCCEECCeEEEcC
Confidence 356789999965 3320 1357999999999876653
No 37
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=42.85 E-value=15 Score=25.25 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=26.1
Q ss_pred ceeeCCCCCCccceeecCCCCCC-CCCCcccceEEEEcCccceeeccCCCC
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKC-PCKQQCVPFIHLVKSKIDIQYANRSPE 66 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kC-sCG~~v~Paf~i~kSkVD~~~~~~~~~ 66 (75)
....|+||+..+..-.- ...-| +|+....|. ...|+..+-+.+.
T Consensus 9 ~~~~Cw~C~~~~~~~~~-~~~fC~~c~~~q~~~-----~~~d~y~lLgv~~ 53 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPGRE-DRFFCPQCRALQAPD-----PTRDYFSLMDCNR 53 (207)
T ss_dssp --CBCSSSCCBCCSSCS-CCCBCTTTCCBCCCC-----TTCCHHHHTTSCS
T ss_pred CCCCCCCCCCCcccccc-cccccccccccCCCC-----CCCCHHHHcCCCC
Confidence 45689999987433333 45668 588766553 3456655555544
No 38
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.14 E-value=9.9 Score=23.68 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=21.0
Q ss_pred cceeeCCCCCCccceeecCCCCCCCCCCcc
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCPCKQQC 45 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCsCG~~v 45 (75)
..+-.|..|+.|||-. .+.+|.||...
T Consensus 23 ~~~~rC~~C~kkvgl~---~~f~CrCg~~F 49 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA---TSFECRCGNNF 49 (85)
T ss_dssp CCCCBCSSSCCBCSSS---SCEECTTCCEE
T ss_pred ccCccchhhCCeeccc---CCeEcCCCCEe
Confidence 3456799999999943 48899999865
No 39
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=41.28 E-value=8 Score=24.90 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=15.2
Q ss_pred ccccceeeCCCCCCcccee
Q psy10712 13 NFLKDKLKCPNCSTNLGAF 31 (75)
Q Consensus 13 ~~~~GKL~CP~C~aKLGsf 31 (75)
+...-+|.||.|++++..-
T Consensus 7 ~~N~~~i~C~~C~s~il~~ 25 (115)
T 1hxr_A 7 GRNRKAVLCQRCGSRVLQP 25 (115)
T ss_dssp SBBSSCEEETTTCCEEECT
T ss_pred CcccCeEECCCCCCEEecc
Confidence 3467899999999988743
No 40
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=40.40 E-value=9.1 Score=24.63 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=9.1
Q ss_pred eCCCCCCccc
Q psy10712 20 KCPNCSTNLG 29 (75)
Q Consensus 20 ~CP~C~aKLG 29 (75)
+||+|++++-
T Consensus 5 ~C~~CG~~~~ 14 (189)
T 3cng_A 5 FCSQCGGEVI 14 (189)
T ss_dssp BCTTTCCBCE
T ss_pred cCchhCCccc
Confidence 7999999995
No 41
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=39.85 E-value=21 Score=24.89 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=26.0
Q ss_pred cceeeCCCCCCccceeecC----C--CCCCC-CCCcccceEEEEcCcc
Q psy10712 16 KDKLKCPNCSTNLGAFDYV----S--GHKCP-CKQQCVPFIHLVKSKI 56 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv----~--G~kCs-CG~~v~Paf~i~kSkV 56 (75)
-.++.|.+|+.+ |++- . .-.|+ ||..+.|.+-+.--.+
T Consensus 119 ~~~~~C~~C~~~---~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~FgE~l 163 (249)
T 1m2k_A 119 LRVVRCTSCNNS---FEVESAPKIPPLPKCDKCGSLLRPGVVWAGEML 163 (249)
T ss_dssp EEEEEESSSSCE---EECSSCCCSSSCCBCSSSSSBEEEEECCTTSCC
T ss_pred cceeEeCCCCCc---ccchhhccCCCCCCCCCCCCCcCCeEEecCCCC
Confidence 356789999884 5551 1 35896 9999999886654433
No 42
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=39.55 E-value=9 Score=21.63 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=15.5
Q ss_pred ceeeCCCCCCccc-eeecCCCCCCC-CCC
Q psy10712 17 DKLKCPNCSTNLG-AFDYVSGHKCP-CKQ 43 (75)
Q Consensus 17 GKL~CP~C~aKLG-sf~wv~G~kCs-CG~ 43 (75)
-...||+|++-+. +-.. ....|. ||.
T Consensus 17 ~~~fCPkCG~~~~ma~~~-dr~~C~kCgy 44 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHA-DRYSCGRCGY 44 (55)
T ss_dssp SSCCCTTTTTTCCCEECS-SEEECTTTCC
T ss_pred ccccCcCCCCceeEeccC-CEEECCCCCC
Confidence 3567999999663 1112 345665 765
No 43
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=39.31 E-value=16 Score=25.50 Aligned_cols=38 Identities=26% Similarity=0.641 Sum_probs=26.2
Q ss_pred cceeeCCCCCCccceeecC---------CCCCCC-CCC-cccceEEEEcCcc
Q psy10712 16 KDKLKCPNCSTNLGAFDYV---------SGHKCP-CKQ-QCVPFIHLVKSKI 56 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv---------~G~kCs-CG~-~v~Paf~i~kSkV 56 (75)
-.++.|.+|+.. |++- .--.|+ ||. .+.|.+-+.--.+
T Consensus 121 ~~~~~C~~C~~~---~~~~~~~~~~~~~~~p~C~~Cgg~~lrP~Vv~FgE~l 169 (253)
T 1ma3_A 121 MDKLDCLDCHET---YDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPL 169 (253)
T ss_dssp EEEEEETTTCCE---EEGGGTHHHHHTTCCCCCTTTCCSCEEEEECCBTSBC
T ss_pred cCeeeeCCCCCc---CcHHHHHHHhccCCCCCCCCCCCccccceEEEeCCCC
Confidence 456789999984 5551 125796 999 9999887654443
No 44
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=39.29 E-value=10 Score=20.07 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=17.0
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
.--.|-.|+..| | +|.+|. |+.-+
T Consensus 13 ~pt~C~~C~~~l----~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 13 KLAFCDICQKFL----L-NGFRCQTCGYKF 37 (52)
T ss_dssp SCEECTTSSSEE----C-SEEECTTTTCCB
T ss_pred CCcCCCCccccc----c-cCCEeCCCCCeE
Confidence 346677786655 8 899997 77554
No 45
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.07 E-value=23 Score=19.79 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=12.3
Q ss_pred eeeCCCCCCccceeecCCCCCCC-CCCcccce
Q psy10712 18 KLKCPNCSTNLGAFDYVSGHKCP-CKQQCVPF 48 (75)
Q Consensus 18 KL~CP~C~aKLGsf~wv~G~kCs-CG~~v~Pa 48 (75)
+++|..|-.++ + +.+|. |++-|.|+
T Consensus 3 ~~yC~~cy~~~----~--~~~C~~C~~~I~~~ 28 (82)
T 1x63_A 3 SGSSGKCTTRE----D--SPKCKGCFKAIVAG 28 (82)
T ss_dssp SCCCCCCCSCC----C--SCBCSSSCCBCCSS
T ss_pred CcCchhHHccc----c--CCcCccCCcccccC
Confidence 45555555553 1 34553 55555543
No 46
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.85 E-value=34 Score=19.07 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=15.2
Q ss_pred cceeeCCCCCCccceeecCCCCCCC-CCCcccc
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCP-CKQQCVP 47 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~P 47 (75)
+|+++|..|-. + .+.+|. |++-|..
T Consensus 2 ~g~~yC~~~y~-~------~~~~C~~C~~~I~~ 27 (81)
T 2dlo_A 2 SSGSSGEGCYV-A------TLEKCATCSQPILD 27 (81)
T ss_dssp CCCCCCCCCCC-S------SCCBCTTTCCBCCS
T ss_pred cCCEECHHHhh-c------CCCccccCCCeecc
Confidence 56777777765 2 245664 7776653
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=35.80 E-value=6.9 Score=20.16 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.1
Q ss_pred eeeCCCCCCccc
Q psy10712 18 KLKCPNCSTNLG 29 (75)
Q Consensus 18 KL~CP~C~aKLG 29 (75)
+..||.|.+.|-
T Consensus 43 ~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 43 GYRCPLCSGPSS 54 (55)
T ss_dssp TCCCTTSCCSSC
T ss_pred CCcCCCCCCcCC
Confidence 367999988763
No 48
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=34.74 E-value=17 Score=19.32 Aligned_cols=15 Identities=20% Similarity=0.691 Sum_probs=10.9
Q ss_pred cceeeCCCCCCccce
Q psy10712 16 KDKLKCPNCSTNLGA 30 (75)
Q Consensus 16 ~GKL~CP~C~aKLGs 30 (75)
.....||.|+..|-.
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 455789999987653
No 49
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.14 E-value=13 Score=21.14 Aligned_cols=13 Identities=23% Similarity=0.835 Sum_probs=10.6
Q ss_pred cceeeCCCCCCcc
Q psy10712 16 KDKLKCPNCSTNL 28 (75)
Q Consensus 16 ~GKL~CP~C~aKL 28 (75)
.+.-.||+|+++.
T Consensus 10 ~~~~~CPrCn~~f 22 (49)
T 2e72_A 10 GGRKICPRCNAQF 22 (49)
T ss_dssp SSCCCCTTTCCCC
T ss_pred CCceeCCcccccc
Confidence 3778899999875
No 50
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=34.10 E-value=22 Score=24.57 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=17.5
Q ss_pred cceeeCCCCCCccceeecCC----C---CCCCCCCcccceEEE
Q psy10712 16 KDKLKCPNCSTNLGAFDYVS----G---HKCPCKQQCVPFIHL 51 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~----G---~kCsCG~~v~Paf~i 51 (75)
-.++.|.+|+. .|.|-. + ..|.||..+.|.+-+
T Consensus 111 ~~~~~C~~C~~---~~~~~~~~~~~~~p~c~~Cgg~lrP~vv~ 150 (235)
T 1s5p_A 111 LLKVRCSQSGQ---VLDWTGDVTPEDKCHCCQFPAPLRPHVVW 150 (235)
T ss_dssp EEEEEETTTCC---EEECCSCCCSSCCC-------CEEEEECC
T ss_pred ceEEEeCCCCC---cccchhhccCCCCCCCCCCCCeecCcEEE
Confidence 35678999987 466611 2 224588888887743
No 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=33.84 E-value=11 Score=20.30 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=7.4
Q ss_pred eeCCCCCCccce
Q psy10712 19 LKCPNCSTNLGA 30 (75)
Q Consensus 19 L~CP~C~aKLGs 30 (75)
-.||.|.+.+.+
T Consensus 41 ~~CP~Cr~~~~~ 52 (68)
T 1chc_A 41 PTCPLCKVPVES 52 (68)
T ss_dssp CSTTTTCCCCCC
T ss_pred CcCcCCChhhHh
Confidence 456766666654
No 52
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=33.60 E-value=19 Score=24.98 Aligned_cols=38 Identities=16% Similarity=0.461 Sum_probs=26.6
Q ss_pred cceeeCCCCCCccceeec------C---CCCCCC-CCCcccceEEEEcCcc
Q psy10712 16 KDKLKCPNCSTNLGAFDY------V---SGHKCP-CKQQCVPFIHLVKSKI 56 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~w------v---~G~kCs-CG~~v~Paf~i~kSkV 56 (75)
-.++.|.+|+.. |++ + ..-+|+ ||..+.|.+-+.--.+
T Consensus 119 ~~~~~C~~C~~~---~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~l 166 (246)
T 1yc5_A 119 VEEYYCVRCEKK---YTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENL 166 (246)
T ss_dssp EEEEEETTTCCE---EEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBC
T ss_pred cceeEcCCCCCC---CcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCC
Confidence 456789999884 554 0 136896 9999999887654443
No 53
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.54 E-value=16 Score=20.15 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.1
Q ss_pred ceeeCCCCCCc
Q psy10712 17 DKLKCPNCSTN 27 (75)
Q Consensus 17 GKL~CP~C~aK 27 (75)
-.-.||+|++.
T Consensus 18 ~~k~CP~CG~~ 28 (50)
T 3j20_Y 18 KNKFCPRCGPG 28 (50)
T ss_dssp SSEECSSSCSS
T ss_pred ecccCCCCCCc
Confidence 34579999884
No 54
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=33.29 E-value=8 Score=23.25 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=9.1
Q ss_pred eCCCCCCccceeec
Q psy10712 20 KCPNCSTNLGAFDY 33 (75)
Q Consensus 20 ~CP~C~aKLGsf~w 33 (75)
.||+|+..-=+-||
T Consensus 25 ~CPnC~s~~tS~~w 38 (69)
T 1ryq_A 25 RCPVCGSRDLSEEW 38 (69)
T ss_dssp SCTTTCCCCEESCE
T ss_pred cCCCccCCccCCcc
Confidence 59999865335555
No 55
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=33.24 E-value=9.4 Score=20.03 Aligned_cols=16 Identities=31% Similarity=0.839 Sum_probs=11.5
Q ss_pred ccceeeCCCCCCccce
Q psy10712 15 LKDKLKCPNCSTNLGA 30 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGs 30 (75)
.+.+..||.|.+.+..
T Consensus 41 ~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 41 LKNANTCPTCRKKINH 56 (64)
T ss_dssp HHHCSBCTTTCCBCTT
T ss_pred HHcCCCCCCCCccCCc
Confidence 3335689999988764
No 56
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.82 E-value=14 Score=23.96 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=8.3
Q ss_pred eeCCCCCCcc
Q psy10712 19 LKCPNCSTNL 28 (75)
Q Consensus 19 L~CP~C~aKL 28 (75)
..||.|++++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4799999876
No 57
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=32.67 E-value=16 Score=22.77 Aligned_cols=19 Identities=26% Similarity=0.805 Sum_probs=11.1
Q ss_pred cccceeeCCCCCCccceee
Q psy10712 14 FLKDKLKCPNCSTNLGAFD 32 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLGsf~ 32 (75)
|...+..||.|...+.++.
T Consensus 83 ~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 83 WMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HTTTCSBCTTTCCBCCCEE
T ss_pred HHHcCCcCCCCCCcCCCCC
Confidence 3344456777777765543
No 58
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=32.41 E-value=18 Score=20.05 Aligned_cols=26 Identities=23% Similarity=0.611 Sum_probs=18.9
Q ss_pred cceeeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
..--.|-.|+..| +-+|.||. |+--+
T Consensus 20 ~~pt~C~~C~~~i----~kqg~kC~~C~~~c 46 (59)
T 1rfh_A 20 GGPGWCDLCGREV----LRQALRCANCKFTC 46 (59)
T ss_dssp SCCEECTTTCSEE----CSCCEECTTTSCEE
T ss_pred CCCeEchhcchhh----hhCccEeCCCCCeE
Confidence 3456788899999 33799997 76543
No 59
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=32.11 E-value=10 Score=20.47 Aligned_cols=17 Identities=29% Similarity=0.735 Sum_probs=11.8
Q ss_pred cccceeeCCCCCCccce
Q psy10712 14 FLKDKLKCPNCSTNLGA 30 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLGs 30 (75)
|.+.+..||.|.+.+-.
T Consensus 47 ~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 47 SLKNANTCPTCRKKINH 63 (71)
T ss_dssp HHHHCSBCTTTCCBCCC
T ss_pred HHHcCCCCCCCCCccCh
Confidence 33444689999988754
No 60
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.00 E-value=11 Score=20.83 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=7.3
Q ss_pred eeCCCCCCccce
Q psy10712 19 LKCPNCSTNLGA 30 (75)
Q Consensus 19 L~CP~C~aKLGs 30 (75)
..||-|.+++-.
T Consensus 53 ~~CP~Cr~~~~~ 64 (78)
T 2ect_A 53 DSCPVCRKSLTG 64 (78)
T ss_dssp CSCTTTCCCCCC
T ss_pred CcCcCcCCccCC
Confidence 457777666543
No 61
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=31.67 E-value=8.4 Score=26.02 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.7
Q ss_pred ccceeeCCCCCCccceeecCCCCCCCCCC
Q psy10712 15 LKDKLKCPNCSTNLGAFDYVSGHKCPCKQ 43 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv~G~kCsCG~ 43 (75)
..|+|.|-+|+...|..-=..|..++|=.
T Consensus 66 ~~g~I~C~~Cgq~WG~~m~yk~~~LP~Lk 94 (145)
T 3eqt_A 66 PGGVISCRNCGEVWGLQMIYKSVKLPVLK 94 (145)
T ss_dssp EEEEEEETTTCCEEEEEEEETTEEEEEEC
T ss_pred CCcEEEchhhChhhHhhEEeccccCceEe
Confidence 47999999999999976554677766655
No 62
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.57 E-value=9.4 Score=20.35 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=11.4
Q ss_pred cccceeeCCCCCCccc
Q psy10712 14 FLKDKLKCPNCSTNLG 29 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLG 29 (75)
|...+..||.|...|.
T Consensus 52 ~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 52 SLKNANTCPTCRKKIN 67 (69)
T ss_dssp HHHHCSSCTTTCCCCC
T ss_pred HHHcCCCCCCCCCccC
Confidence 4444568999998774
No 63
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.46 E-value=16 Score=22.21 Aligned_cols=28 Identities=25% Similarity=0.700 Sum_probs=21.5
Q ss_pred ccceeeCCCCCCccceeecCCCCCCCCCCccc
Q psy10712 15 LKDKLKCPNCSTNLGAFDYVSGHKCPCKQQCV 46 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~wv~G~kCsCG~~v~ 46 (75)
...+..|..|+.|||-- +.+|.||....
T Consensus 22 k~~~~RC~~C~kkvgL~----~f~CrCg~~FC 49 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT----GFKCRCGSTFC 49 (74)
T ss_dssp TCCCCBCSSSCCBCTTT----CEECTTSCEEC
T ss_pred cccCccchhhcCccccc----ceEeccCCEec
Confidence 35667899999999853 77899988653
No 64
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=31.23 E-value=21 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=11.4
Q ss_pred ccccceeeCCCCCC
Q psy10712 13 NFLKDKLKCPNCST 26 (75)
Q Consensus 13 ~~~~GKL~CP~C~a 26 (75)
...+|.|.||+|+-
T Consensus 104 ~v~eg~L~C~~cg~ 117 (141)
T 2j6a_A 104 SIAEGEMKCRNCGH 117 (141)
T ss_dssp EEEEEEEECTTTCC
T ss_pred eccCCEEECCCCCC
Confidence 34689999999975
No 65
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.03 E-value=10 Score=20.98 Aligned_cols=17 Identities=35% Similarity=0.870 Sum_probs=10.5
Q ss_pred cccceeeCCCCCCccce
Q psy10712 14 FLKDKLKCPNCSTNLGA 30 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLGs 30 (75)
|...+..||-|.+.+..
T Consensus 56 w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 56 WLKANRTCPICRADSGP 72 (75)
T ss_dssp HHHHCSSCTTTCCCCCC
T ss_pred HHHcCCcCcCcCCcCCC
Confidence 34444568888777653
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.68 E-value=12 Score=22.07 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.4
Q ss_pred ceeeCCCCCCcc
Q psy10712 17 DKLKCPNCSTNL 28 (75)
Q Consensus 17 GKL~CP~C~aKL 28 (75)
++..||-|++.+
T Consensus 57 ~~~~CplCr~~~ 68 (80)
T 2d8s_A 57 DTRCCELCKYEF 68 (80)
T ss_dssp CCSBCSSSCCBC
T ss_pred CCCCCCCCCCee
Confidence 347899999876
No 67
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=30.62 E-value=14 Score=22.53 Aligned_cols=12 Identities=17% Similarity=0.730 Sum_probs=10.1
Q ss_pred cceeeCCCCCCc
Q psy10712 16 KDKLKCPNCSTN 27 (75)
Q Consensus 16 ~GKL~CP~C~aK 27 (75)
..|.-||+|+.+
T Consensus 28 ~~k~FCp~CGn~ 39 (79)
T 2con_A 28 MNRVFCGHCGNK 39 (79)
T ss_dssp SSCCSCSSSCCS
T ss_pred cccccccccCcc
Confidence 578999999885
No 68
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=30.43 E-value=11 Score=25.75 Aligned_cols=28 Identities=21% Similarity=0.551 Sum_probs=17.8
Q ss_pred cccee-eCCCCCCccceeecCCCCCCCCCCccc
Q psy10712 15 LKDKL-KCPNCSTNLGAFDYVSGHKCPCKQQCV 46 (75)
Q Consensus 15 ~~GKL-~CP~C~aKLGsf~wv~G~kCsCG~~v~ 46 (75)
+-|.| .||.|+ |.+-+ +|..=.|..+++
T Consensus 74 ~FGal~~CP~C~---G~l~y-~~~~Y~C~G~is 102 (160)
T 2riq_A 74 VFGALLPCEECS---GQLVF-KSDAYYCTGDVT 102 (160)
T ss_dssp HHCEECCCTTTC---CCEEE-ETTEEEECCEEE
T ss_pred HhCCCCCCCCCC---CEEEE-eCCeEEECCCCC
Confidence 45666 799999 56655 454444555554
No 69
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=30.41 E-value=20 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=18.2
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
.--.|-.|+..| +-+|.+|. |+-.+
T Consensus 34 ~pt~C~~C~~~l----~~qG~kC~~C~~~c 59 (72)
T 2fnf_X 34 GPGWCDLCGREV----LRQALRCANCKFTC 59 (72)
T ss_dssp SCCBCTTTSSBC----SSCCEECTTSSCEE
T ss_pred CCcchhhhhHHH----HhCcCccCCCCCee
Confidence 345688899999 44799997 76543
No 70
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.38 E-value=26 Score=19.78 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=13.8
Q ss_pred eeCCCCCCccceeecCCCCCCC---CCC
Q psy10712 19 LKCPNCSTNLGAFDYVSGHKCP---CKQ 43 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G~kCs---CG~ 43 (75)
-.||+|+..+-.=.==+-+.|. |+.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~ 34 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKA 34 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGS
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCC
Confidence 4688888766432221335665 654
No 71
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=30.24 E-value=21 Score=19.50 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=11.5
Q ss_pred eeeCCCCCCccceee
Q psy10712 18 KLKCPNCSTNLGAFD 32 (75)
Q Consensus 18 KL~CP~C~aKLGsf~ 32 (75)
.+.||+|+.+--.|.
T Consensus 15 ~~~Cp~Cg~~~~~~~ 29 (57)
T 1qyp_A 15 KITCPKCGNDTAYWW 29 (57)
T ss_dssp ECCCTTTCCSEEEEE
T ss_pred EeECCCCCCCEEEEE
Confidence 678999998665554
No 72
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.51 E-value=16 Score=20.68 Aligned_cols=12 Identities=25% Similarity=0.944 Sum_probs=9.2
Q ss_pred ceeeCCCCCCcc
Q psy10712 17 DKLKCPNCSTNL 28 (75)
Q Consensus 17 GKL~CP~C~aKL 28 (75)
--+.||.|+-|+
T Consensus 22 P~IrCpyCGyri 33 (48)
T 4ayb_P 22 PGVRCPYCGYKI 33 (48)
T ss_dssp SSSCCTTTCCSC
T ss_pred CCcccCccCcEE
Confidence 347899998776
No 73
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=29.40 E-value=17 Score=21.16 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=10.8
Q ss_pred ccceeeCCCCCCccce
Q psy10712 15 LKDKLKCPNCSTNLGA 30 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGs 30 (75)
...+..||.|...+..
T Consensus 54 ~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 54 LSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTTCCBCTTTCCBCCG
T ss_pred HHCCCCCCCCCCcCCh
Confidence 3445678888887764
No 74
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.84 E-value=24 Score=20.23 Aligned_cols=29 Identities=21% Similarity=0.635 Sum_probs=18.6
Q ss_pred cccceeeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 14 FLKDKLKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
|+..+ .|..|+.+.+-|.- -.-|. ||.-+
T Consensus 8 W~~~~-~C~~C~~~F~~~~R--rHHCR~CG~v~ 37 (73)
T 1vfy_A 8 WIDSD-ACMICSKKFSLLNR--KHHCRSCGGVF 37 (73)
T ss_dssp CCCCS-BCTTTCCBCBTTBC--CEECTTTCCEE
T ss_pred CccCC-cccCCCCccCCccc--cccCCCCCEEE
Confidence 44443 69999998776654 34563 77654
No 75
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.62 E-value=16 Score=19.61 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=10.4
Q ss_pred cceeeCCCCCCccc
Q psy10712 16 KDKLKCPNCSTNLG 29 (75)
Q Consensus 16 ~GKL~CP~C~aKLG 29 (75)
.+...||.|++++.
T Consensus 48 ~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 48 SSSPKCTACQESIV 61 (66)
T ss_dssp TSSCCCTTTCCCCC
T ss_pred hCcCCCCCCCcCCC
Confidence 34567999988875
No 76
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=28.50 E-value=14 Score=21.51 Aligned_cols=18 Identities=17% Similarity=0.588 Sum_probs=14.2
Q ss_pred cceeeCCCCCC----ccceeec
Q psy10712 16 KDKLKCPNCST----NLGAFDY 33 (75)
Q Consensus 16 ~GKL~CP~C~a----KLGsf~w 33 (75)
.-|..|-+|+- |+-+|||
T Consensus 30 ~qK~~Ca~CGygpa~r~R~ynW 51 (57)
T 1vq8_1 30 TKKKVCSSCGFGKSAKRRDYEW 51 (57)
T ss_dssp TTTTEETTTCTTTCSSCCCCGG
T ss_pred ccccccccccCCchhhhcCcch
Confidence 34667888886 8899999
No 77
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=28.20 E-value=11 Score=20.34 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=8.1
Q ss_pred eeCCCCCCccc
Q psy10712 19 LKCPNCSTNLG 29 (75)
Q Consensus 19 L~CP~C~aKLG 29 (75)
..||-|.++|-
T Consensus 52 ~~CP~Cr~~~~ 62 (69)
T 2kiz_A 52 KKCPICRVDIE 62 (69)
T ss_dssp SBCTTTCSBSC
T ss_pred CCCcCcCcccc
Confidence 35999988763
No 78
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.05 E-value=21 Score=19.53 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.2
Q ss_pred cceeeCCCCCCccc
Q psy10712 16 KDKLKCPNCSTNLG 29 (75)
Q Consensus 16 ~GKL~CP~C~aKLG 29 (75)
.+...||.|...+.
T Consensus 57 ~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 57 DGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCBCCTTTCCCCC
T ss_pred CCCCCCCCCCCcCC
Confidence 35789999998875
No 79
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=27.33 E-value=22 Score=19.51 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=12.4
Q ss_pred ccceeeCCCCCCcccee
Q psy10712 15 LKDKLKCPNCSTNLGAF 31 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf 31 (75)
....+.||+|+.+--.|
T Consensus 6 ~t~~~~Cp~Cg~~~a~f 22 (50)
T 1tfi_A 6 QTDLFTCGKCKKKNCTY 22 (50)
T ss_dssp ECCCSCCSSSCSSCEEE
T ss_pred eeCccCCCCCCCCEEEE
Confidence 35667899999876555
No 80
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.32 E-value=12 Score=20.84 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=12.7
Q ss_pred cceeeCCC-CCCccceeecCCCCCCC-CCCcccc
Q psy10712 16 KDKLKCPN-CSTNLGAFDYVSGHKCP-CKQQCVP 47 (75)
Q Consensus 16 ~GKL~CP~-C~aKLGsf~wv~G~kCs-CG~~v~P 47 (75)
+|+++|.+ |-.++ -+.+|. |+.-.+.
T Consensus 46 ~g~~yC~~~cy~~~------f~~~C~~C~~~~~~ 73 (76)
T 1iml_A 46 EGKPYCNHPCYSAM------FGPKGFGRGGAESH 73 (76)
T ss_dssp TTEEEETTTHHHHH------SSCCCSSCCCSSSC
T ss_pred CCeEeeCHHHHHHH------hCccCCCcCCceee
Confidence 45566652 54443 245553 6554433
No 81
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.35 E-value=13 Score=20.35 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=11.4
Q ss_pred eeeCCCCCCccceeec
Q psy10712 18 KLKCPNCSTNLGAFDY 33 (75)
Q Consensus 18 KL~CP~C~aKLGsf~w 33 (75)
+..||-|...|-...-
T Consensus 52 ~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 52 RKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSBCTTTCCBCSSCCS
T ss_pred CCcCCCcCcccccccc
Confidence 3479999988865543
No 82
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.10 E-value=17 Score=19.50 Aligned_cols=15 Identities=33% Similarity=0.775 Sum_probs=10.7
Q ss_pred cceeeCCCCCCccce
Q psy10712 16 KDKLKCPNCSTNLGA 30 (75)
Q Consensus 16 ~GKL~CP~C~aKLGs 30 (75)
.+...||.|+..+..
T Consensus 41 ~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 41 RGAGNCPECGTPLRK 55 (65)
T ss_dssp TTSSSCTTTCCCCSS
T ss_pred cCCCcCCCCCCcccc
Confidence 345679999888754
No 83
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=25.80 E-value=16 Score=20.33 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=9.2
Q ss_pred ceeeCCCCCCcc
Q psy10712 17 DKLKCPNCSTNL 28 (75)
Q Consensus 17 GKL~CP~C~aKL 28 (75)
++..||-|++++
T Consensus 46 ~~~~C~~C~~~~ 57 (60)
T 1vyx_A 46 RNTACQICGVVY 57 (60)
T ss_dssp TCSBCTTTCCBC
T ss_pred CCCccCCCCCee
Confidence 457899998764
No 84
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=25.78 E-value=19 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=10.3
Q ss_pred cccceeeCCCCCCcc
Q psy10712 14 FLKDKLKCPNCSTNL 28 (75)
Q Consensus 14 ~~~GKL~CP~C~aKL 28 (75)
|...+-.||-|.+.+
T Consensus 73 wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 73 WLQKSGTCPVCRCMF 87 (91)
T ss_dssp HHTTTCBCTTTCCBS
T ss_pred HHHcCCcCcCcCccC
Confidence 445556788888765
No 85
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=25.73 E-value=13 Score=23.01 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=11.5
Q ss_pred eCCCCCCccceeecCCCC
Q psy10712 20 KCPNCSTNLGAFDYVSGH 37 (75)
Q Consensus 20 ~CP~C~aKLGsf~wv~G~ 37 (75)
.||+|+..-=+-|| .|.
T Consensus 37 ~CPnCgs~~~T~~w-~G~ 53 (81)
T 3p8b_A 37 RCPVCGSRDLSEEW-FDL 53 (81)
T ss_dssp SCTTTCCCCEESCE-EEE
T ss_pred CCCCCCCCccCCcc-ceE
Confidence 49999875546666 453
No 86
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=25.71 E-value=18 Score=19.89 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=14.3
Q ss_pred eeCCCCCCccceeecCCCCCCC-CCC
Q psy10712 19 LKCPNCSTNLGAFDYVSGHKCP-CKQ 43 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G~kCs-CG~ 43 (75)
-.|--|+..| | .|.+|. |+.
T Consensus 15 t~C~~C~k~i----~-~G~kC~~Ck~ 35 (49)
T 1kbe_A 15 QVCNVCQKSM----I-FGVKCKHCRL 35 (49)
T ss_dssp CCCSSSCCSS----C-CEEEETTTTE
T ss_pred cCccccCcee----E-CcCCCCCCCC
Confidence 4577787777 7 789995 543
No 87
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.55 E-value=28 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=20.2
Q ss_pred ccccceeeCCCCCCccceeecCCCCCCC-CCCccc
Q psy10712 13 NFLKDKLKCPNCSTNLGAFDYVSGHKCP-CKQQCV 46 (75)
Q Consensus 13 ~~~~GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v~ 46 (75)
.|.++ -.|+.|+.+.+-|.. -.-|. ||.-+.
T Consensus 157 ~W~~~-~~C~~C~~~F~~~~r--rhhCr~CG~v~C 188 (220)
T 1dvp_A 157 NWADG-RVCHRCRVEFTFTNR--KHHCRNCGQVFC 188 (220)
T ss_dssp CCCCC-SBCTTTCCBCCSSSC--CEECTTTCCEEC
T ss_pred cCCCC-CccCCCCCccCCccc--ccccCCcCCEEC
Confidence 45555 379999998776654 35563 666553
No 88
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.29 E-value=21 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.750 Sum_probs=11.3
Q ss_pred cccceeeCCCCCCccc
Q psy10712 14 FLKDKLKCPNCSTNLG 29 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLG 29 (75)
|++.+-.||-|.+.+-
T Consensus 60 Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 60 WVKQNNRCPLCQQDWV 75 (81)
T ss_dssp HTTTCCBCTTTCCBCC
T ss_pred HHHhCCCCCCcCCCcc
Confidence 4444558999998764
No 89
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.84 E-value=25 Score=18.96 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=10.9
Q ss_pred cceeeCCCCCCccc
Q psy10712 16 KDKLKCPNCSTNLG 29 (75)
Q Consensus 16 ~GKL~CP~C~aKLG 29 (75)
.++..||.|...+-
T Consensus 55 ~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 55 CGFFKCPLCKTSVR 68 (73)
T ss_dssp CSCCCCSSSCCCCC
T ss_pred CCCCCCCCCCCcCC
Confidence 36778999998874
No 90
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=24.72 E-value=12 Score=21.23 Aligned_cols=27 Identities=22% Similarity=0.575 Sum_probs=19.4
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
.--.|-.|+.++| |.= +|.+|. |+..+
T Consensus 18 ~~~~C~~Cg~~i~-~gk-q~~kC~dC~~~c 45 (61)
T 4b6d_A 18 KPESCVPCGKRIK-FGK-LSLKCRDCRVVS 45 (61)
T ss_dssp SCEECTTTCCEEC-TTC-EEEEESSSSCEE
T ss_pred CCcccccccCEEE-Eee-EeeECCCCCCeE
Confidence 3467988999997 533 489996 87654
No 91
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=24.69 E-value=23 Score=20.95 Aligned_cols=16 Identities=38% Similarity=0.850 Sum_probs=12.7
Q ss_pred cceeeCCCCCCcccee
Q psy10712 16 KDKLKCPNCSTNLGAF 31 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf 31 (75)
..+..||-|.+.++.-
T Consensus 80 ~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 80 DGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SSCCBCTTTCCBSSSC
T ss_pred CCCCcCCCCCCccCCC
Confidence 5678999999988754
No 92
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.55 E-value=15 Score=20.19 Aligned_cols=16 Identities=19% Similarity=0.467 Sum_probs=11.2
Q ss_pred cceeeCCCCCCcccee
Q psy10712 16 KDKLKCPNCSTNLGAF 31 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf 31 (75)
+.+..||.|...+..-
T Consensus 48 ~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 48 YYSNRCPKCNIVVHQT 63 (72)
T ss_dssp HHCSSCTTTCCCCCSS
T ss_pred HcCCcCCCcCcccCcc
Confidence 3356799999887643
No 93
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.46 E-value=8.7 Score=23.62 Aligned_cols=13 Identities=0% Similarity=-0.572 Sum_probs=10.2
Q ss_pred CCC-CCCcccceEE
Q psy10712 38 KCP-CKQQCVPFIH 50 (75)
Q Consensus 38 kCs-CG~~v~Paf~ 50 (75)
+|. |+.-|++...
T Consensus 71 ~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 71 AGGSGGHMGSGGDV 84 (122)
T ss_dssp SSSCSSCCSCCEES
T ss_pred ccccCCCCcCchhe
Confidence 896 9999987543
No 94
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=24.44 E-value=20 Score=19.93 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=18.2
Q ss_pred eeeCCCCCCccceeecCCCCCCC-CCCc
Q psy10712 18 KLKCPNCSTNLGAFDYVSGHKCP-CKQQ 44 (75)
Q Consensus 18 KL~CP~C~aKLGsf~wv~G~kCs-CG~~ 44 (75)
--.|-.|+..|-.+.. +|.+|. |+-.
T Consensus 20 pt~C~~C~~~l~Gl~~-qg~~C~~C~~~ 46 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVK-QGLKCEDCGMN 46 (65)
T ss_dssp CCBCTTTCCBCCSSSS-CEEEETTTCCE
T ss_pred CCcccccChhhhccCc-eeeECCCCCCe
Confidence 4568779888854555 799997 7643
No 95
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.32 E-value=29 Score=20.31 Aligned_cols=31 Identities=26% Similarity=0.653 Sum_probs=18.2
Q ss_pred ccccce--eeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 13 NFLKDK--LKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 13 ~~~~GK--L~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
.|+.++ ..|..|+.+.+-|.. -.-|. ||.-+
T Consensus 12 ~W~~d~~~~~C~~C~~~Fs~~~R--rHHCR~CG~v~ 45 (82)
T 2yw8_A 12 AWLKDDEATHCRQCEKEFSISRR--KHHCRNCGHIF 45 (82)
T ss_dssp ---CCCCCCBCTTTCCBCBTTBC--CEECTTTCCEE
T ss_pred ccccCccCCcccCcCCcccCccc--cccCCCCCCEE
Confidence 444433 479999998776655 34563 77655
No 96
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.03 E-value=20 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.709 Sum_probs=14.7
Q ss_pred eeeCCCCCCccceeecCCCCCCC-CCC
Q psy10712 18 KLKCPNCSTNLGAFDYVSGHKCP-CKQ 43 (75)
Q Consensus 18 KL~CP~C~aKLGsf~wv~G~kCs-CG~ 43 (75)
-+.|..|+.+ +|.- +-..|. ||.
T Consensus 17 H~lCrRCG~~--syH~-qK~~Ca~CGy 40 (62)
T 3j21_e 17 HIRCRRCGRV--SYNV-KKGYCAACGF 40 (62)
T ss_dssp CCBCSSSCSB--CEET-TTTEETTTCT
T ss_pred eeeecccCcc--hhcc-ccccccccCC
Confidence 3567777766 6666 666663 664
No 97
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.79 E-value=33 Score=16.72 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=8.9
Q ss_pred CCCCC-CCCcccce
Q psy10712 36 GHKCP-CKQQCVPF 48 (75)
Q Consensus 36 G~kCs-CG~~v~Pa 48 (75)
+.+|+ ||+-|.|+
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 35675 88877765
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.77 E-value=25 Score=21.20 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=8.7
Q ss_pred eeCCCCCCccc
Q psy10712 19 LKCPNCSTNLG 29 (75)
Q Consensus 19 L~CP~C~aKLG 29 (75)
-.||-|++.|.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 35999998775
No 99
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=23.76 E-value=28 Score=27.02 Aligned_cols=26 Identities=27% Similarity=0.559 Sum_probs=18.6
Q ss_pred eeCCCCCCccceeecCCCCCCC-CCCcc
Q psy10712 19 LKCPNCSTNLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G~kCs-CG~~v 45 (75)
..|..|+..|....- +|.+|. |+.-|
T Consensus 114 ~~C~~C~~~l~g~~~-qg~~C~~C~~~~ 140 (674)
T 3pfq_A 114 TFCDHCGSLLYGLIH-QGMKCDTCMMNV 140 (674)
T ss_dssp CCCSSSCSCCBBSSS-CEECCSSSCCCB
T ss_pred CCCCccccccchhhc-CccccccCCcch
Confidence 478889998876655 788885 55443
No 100
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=23.08 E-value=25 Score=24.58 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=18.5
Q ss_pred cceeeCCCCCCccceeecCCCCCCC--CCCcccceEEEEc
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCP--CKQQCVPFIHLVK 53 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCs--CG~~v~Paf~i~k 53 (75)
.|| .||+|+++|= - ..|. ||.-|+. |+-+-
T Consensus 109 q~k-~CpnC~g~L~---~---~~Crgh~GyPVTh-FWrh~ 140 (174)
T 1odh_A 109 QRK-SCPNCNGPLK---L---IPCRGHGGFPVTN-FWRHD 140 (174)
T ss_dssp HHS-BCSSSCCBEE---E---ECCCTBTTBCCEE-EEEEC
T ss_pred hcC-CCCCCCccee---e---EeccCcCCCcceE-EEEEc
Confidence 344 4999997663 3 4564 7887763 44443
No 101
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=22.84 E-value=16 Score=22.98 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=10.9
Q ss_pred ccceeeCCCCCCc
Q psy10712 15 LKDKLKCPNCSTN 27 (75)
Q Consensus 15 ~~GKL~CP~C~aK 27 (75)
.+|++.|+.|..+
T Consensus 166 ~~g~~~c~~c~~~ 178 (184)
T 1pvm_A 166 EKGEIKVFRCSNP 178 (184)
T ss_dssp TTSCEEEEEESCT
T ss_pred ECCEEEccccCCc
Confidence 4789999999875
No 102
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.74 E-value=29 Score=18.91 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=11.4
Q ss_pred cccceeeCCCCCCccce
Q psy10712 14 FLKDKLKCPNCSTNLGA 30 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLGs 30 (75)
|...+..||.|...+..
T Consensus 45 ~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 45 ASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CTTCSSBCSSSCCBCCH
T ss_pred HHHCCCcCcCcCchhCH
Confidence 33444679999888754
No 103
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=22.56 E-value=24 Score=22.49 Aligned_cols=8 Identities=0% Similarity=0.571 Sum_probs=4.1
Q ss_pred Cccceeec
Q psy10712 26 TNLGAFDY 33 (75)
Q Consensus 26 aKLGsf~w 33 (75)
+|+-+|||
T Consensus 42 ~r~R~YnW 49 (94)
T 3iz5_l 42 ARIRKYNW 49 (94)
T ss_dssp SSCCCCSS
T ss_pred hhcccccH
Confidence 44555555
No 104
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=22.50 E-value=31 Score=20.06 Aligned_cols=14 Identities=21% Similarity=0.757 Sum_probs=11.1
Q ss_pred ccceeeCCCCCCcc
Q psy10712 15 LKDKLKCPNCSTNL 28 (75)
Q Consensus 15 ~~GKL~CP~C~aKL 28 (75)
...|-.||+|+++-
T Consensus 23 ~~akY~CPrC~~rY 36 (59)
T 1x4s_A 23 QPARYTCPRCNAPY 36 (59)
T ss_dssp EEECEECTTTCCEE
T ss_pred CCccccCcCCCCCc
Confidence 46788999998864
No 105
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=22.35 E-value=26 Score=22.30 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=12.8
Q ss_pred ccceeeCCCCCCccc
Q psy10712 15 LKDKLKCPNCSTNLG 29 (75)
Q Consensus 15 ~~GKL~CP~C~aKLG 29 (75)
.+|...||.|++|.-
T Consensus 55 keG~q~CpqCktrYk 69 (93)
T 1weo_A 55 REGTQNCPQCKTRYK 69 (93)
T ss_dssp HTSCSSCTTTCCCCC
T ss_pred hccCccccccCCccc
Confidence 578899999999864
No 106
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=22.22 E-value=31 Score=18.96 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.2
Q ss_pred ceeeCCCCCCccce
Q psy10712 17 DKLKCPNCSTNLGA 30 (75)
Q Consensus 17 GKL~CP~C~aKLGs 30 (75)
++..||.|+..+..
T Consensus 42 ~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 42 GHKTCPKSQETLLH 55 (78)
T ss_dssp TCCBCTTTCCBCSS
T ss_pred CcCCCCCCcCCCCh
Confidence 46789999998754
No 107
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=21.50 E-value=58 Score=16.22 Aligned_cols=23 Identities=17% Similarity=0.807 Sum_probs=14.0
Q ss_pred ceeeCCCCCCccceeecCCCCCCC-CCC
Q psy10712 17 DKLKCPNCSTNLGAFDYVSGHKCP-CKQ 43 (75)
Q Consensus 17 GKL~CP~C~aKLGsf~wv~G~kCs-CG~ 43 (75)
|--.||+| |.-||..-..|. |++
T Consensus 5 gDW~C~~C----~~~Nfa~R~~C~~C~~ 28 (33)
T 2k1p_A 5 NDWQCKTC----SNVNWARRSECNMCNT 28 (33)
T ss_dssp SSCBCSSS----CCBCCTTCSBCSSSCC
T ss_pred CCcccCCC----CCccccccccccccCC
Confidence 33458877 456664456664 765
No 108
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.33 E-value=10 Score=23.01 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.4
Q ss_pred CCCCC-CCCcccce
Q psy10712 36 GHKCP-CKQQCVPF 48 (75)
Q Consensus 36 G~kCs-CG~~v~Pa 48 (75)
+.+|. |++-|.|.
T Consensus 63 ~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 63 AVVCQGCHNAIDPE 76 (126)
T ss_dssp CCBCTTTCSBCCTT
T ss_pred CccCcccCCcCCcC
Confidence 67886 99999874
No 109
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=20.97 E-value=25 Score=20.82 Aligned_cols=17 Identities=29% Similarity=0.735 Sum_probs=12.7
Q ss_pred cccceeeCCCCCCccce
Q psy10712 14 FLKDKLKCPNCSTNLGA 30 (75)
Q Consensus 14 ~~~GKL~CP~C~aKLGs 30 (75)
|.+.+..||.|...+..
T Consensus 44 ~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 44 SLKNANTCPTCRKKINH 60 (133)
T ss_dssp HHTTCSBCTTTCCBCTT
T ss_pred HHHhCCCCCCCCCcCcc
Confidence 44555689999998873
No 110
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=20.71 E-value=33 Score=18.88 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=10.1
Q ss_pred CCCCCCCCcccce
Q psy10712 36 GHKCPCKQQCVPF 48 (75)
Q Consensus 36 G~kCsCG~~v~Pa 48 (75)
..-|+||.+-.|.
T Consensus 21 ~~~C~CG~y~~~~ 33 (42)
T 2l0z_A 21 LGGCRCGKYPNLK 33 (42)
T ss_dssp TSSBTTTTBCCCC
T ss_pred CceeccccccCCC
Confidence 4569999988664
No 111
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.65 E-value=40 Score=18.60 Aligned_cols=14 Identities=14% Similarity=0.693 Sum_probs=11.8
Q ss_pred ccceeeCCCCCCcc
Q psy10712 15 LKDKLKCPNCSTNL 28 (75)
Q Consensus 15 ~~GKL~CP~C~aKL 28 (75)
.+|+++|..|-.++
T Consensus 53 ~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 53 QNKEIFCQKCGSGM 66 (76)
T ss_dssp ETTEEEETTTTCCC
T ss_pred ECCEEECHHHhhhh
Confidence 47999999998776
No 112
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=20.46 E-value=32 Score=23.36 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=16.7
Q ss_pred eeCCCCCCccceeecCCC-CCCC-CCCcccce
Q psy10712 19 LKCPNCSTNLGAFDYVSG-HKCP-CKQQCVPF 48 (75)
Q Consensus 19 L~CP~C~aKLGsf~wv~G-~kCs-CG~~v~Pa 48 (75)
..||+|+-||=.- ..| ..|. |+....|.
T Consensus 43 ~ACp~CnKKV~~~--~~g~~~CekC~~~~~~~ 72 (172)
T 3u50_C 43 YRCTCQGKSVLKY--HGDSFFCESCQQFINPQ 72 (172)
T ss_dssp EECTTSCCCEEEE--TTTEEEETTTTEECCCE
T ss_pred hhchhhCCEeeeC--CCCeEECCCCCCCCCce
Confidence 5799999999311 112 2564 77654443
No 113
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.40 E-value=15 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=14.1
Q ss_pred ccceeeCCCCCCccceeec
Q psy10712 15 LKDKLKCPNCSTNLGAFDY 33 (75)
Q Consensus 15 ~~GKL~CP~C~aKLGsf~w 33 (75)
.+|+++|+.|..++=+-+|
T Consensus 50 ~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 50 QGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp ETTEEECTTHHHHTSSSSC
T ss_pred eCCEEEChHHChHhhcccc
Confidence 4689999999877755444
No 114
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=20.35 E-value=32 Score=22.49 Aligned_cols=27 Identities=26% Similarity=0.797 Sum_probs=17.8
Q ss_pred ccceeeCCCCCC----ccceeecCCCCCCC-CCCcc
Q psy10712 15 LKDKLKCPNCST----NLGAFDYVSGHKCP-CKQQC 45 (75)
Q Consensus 15 ~~GKL~CP~C~a----KLGsf~wv~G~kCs-CG~~v 45 (75)
+.-|-.||.|+. |.+.=.| +|. ||.-+
T Consensus 57 q~akytCPfCGk~~vKR~avGIW----~C~~Cgk~f 88 (116)
T 3cc2_Z 57 MNEDHACPNCGEDRVDRQGTGIW----QCSYCDYKF 88 (116)
T ss_dssp HHSCEECSSSCCEEEEEEETTEE----EETTTCCEE
T ss_pred hccCCcCCCCCCceeEecCceeE----ECCCCCCEE
Confidence 467889999987 4444446 453 66654
No 115
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.35 E-value=27 Score=18.05 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=17.6
Q ss_pred eeeCCCCCCccceeecCCCCCCC-CCCc
Q psy10712 18 KLKCPNCSTNLGAFDYVSGHKCP-CKQQ 44 (75)
Q Consensus 18 KL~CP~C~aKLGsf~wv~G~kCs-CG~~ 44 (75)
--.|-.|+..|=.+.- +|.+|. |+-.
T Consensus 11 pt~C~~C~~~l~g~~~-qg~~C~~C~~~ 37 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVK-QGLKCEDCGMN 37 (50)
T ss_dssp CCBCTTTCCBCCSSSS-CEEEETTTCCE
T ss_pred CCCcCCCCceeeccCC-ccCEeCCCCCe
Confidence 3567778888844434 789997 7654
No 116
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.24 E-value=10 Score=22.60 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=20.6
Q ss_pred cceeeCCCCCCccceeecCCCCCCCCCCcc
Q psy10712 16 KDKLKCPNCSTNLGAFDYVSGHKCPCKQQC 45 (75)
Q Consensus 16 ~GKL~CP~C~aKLGsf~wv~G~kCsCG~~v 45 (75)
..+..|-.|+.|||--.. -|.+|.||...
T Consensus 13 ~~~~rC~~C~kk~gL~~~-egf~CrCg~~F 41 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQ-ELGSCRCGYVF 41 (67)
T ss_dssp SCTTBCSSSCCBCCHHHH-HHHCCSSSCCC
T ss_pred ccCCcchhhCCeeccccc-CceEecCCCEe
Confidence 456679899999994322 14688888765
No 117
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.00 E-value=35 Score=20.70 Aligned_cols=11 Identities=36% Similarity=1.102 Sum_probs=6.3
Q ss_pred cceeeCCCCCC
Q psy10712 16 KDKLKCPNCST 26 (75)
Q Consensus 16 ~GKL~CP~C~a 26 (75)
..+-.||+|++
T Consensus 25 ~~~y~Cp~CG~ 35 (83)
T 1vq8_Z 25 NEDHACPNCGE 35 (83)
T ss_dssp HSCEECSSSCC
T ss_pred cccCcCCCCCC
Confidence 44556666655
Done!