RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10712
         (75 letters)



>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
          Length = 329

 Score = 28.3 bits (64), Expect = 0.28
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 13  NFLKDKLKCPNCSTNLGAFDYVSGHKCPCKQQ 44
           ++L+ K  CP C  + G   +++G KC C +Q
Sbjct: 93  DYLEMKYTCPKCK-DTG---FINGKKCSCYKQ 120


>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
          Length = 1176

 Score = 25.3 bits (56), Expect = 3.1
 Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 21 CPNCSTNLGAFDYVSGHKCPCKQQCVP 47
          CPNC  ++       G  C    +C+P
Sbjct: 10 CPNCGGDISDERLEKGLPCE---KCLP 33


>gnl|CDD|150725 pfam10083, DUF2321, Uncharacterized protein conserved in bacteria
          (DUF2321).  Members of this family of hypothetical
          bacterial proteins have no known function.
          Length = 158

 Score = 24.1 bits (52), Expect = 8.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 19 LKCPNCSTNLGAFDYVSG 36
            CP+CST +  F YV G
Sbjct: 40 TSCPHCSTPIRGFYYVDG 57


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.130    0.417 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,412,374
Number of extensions: 223330
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 8
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)