RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10712
         (75 letters)



>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 30.8 bits (69), Expect = 0.024
 Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 2/33 (6%)

Query: 6  RTAVEEGNFLKDKLKCPNCSTNLGA--FDYVSG 36
          + A   G  L   L CP C          +  G
Sbjct: 9  KRAGRRGPNLNIVLTCPECKVYPPKIVERFSEG 41


>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2,
          protein structure initiative, MI center for structural
          genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma
          volcanium}
          Length = 144

 Score = 27.5 bits (62), Expect = 0.30
 Identities = 4/25 (16%), Positives = 11/25 (44%)

Query: 50 HLVKSKIDIQYANRSPENTSEHAEQ 74
          +    +  +  A R+ ++    AE+
Sbjct: 39 YFSYPQYKVTVAGRNIDHVRAFAEK 63


>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
          matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
          g.3.11.5 PDB: 1h4u_A
          Length = 285

 Score = 23.9 bits (51), Expect = 5.6
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 23 NCSTNLGAFDYVSGHKCPCKQ 43
           CS +    DY +G  C C  
Sbjct: 14 QCSVHAECRDYATGFCCRCVA 34


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.130    0.417 

Gapped
Lambda     K      H
   0.267   0.0841    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,087,948
Number of extensions: 46098
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)