BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10716
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 85.1 bits (209), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
+N +F GP LTGL+NLGNTCY+NSILQCL N L +YF + RS +
Sbjct: 51 LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH-- 108
Query: 66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
G++AEEF +I LW G RY SP+ FK+
Sbjct: 109 -KGEVAEEFGIIMKALWTGQYRYISPKDFKI 138
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYF-----VTEFKRSMTAAYSK 65
+N +F GP LTGL+NLGNTCY NSILQCL N L +YF + RS +
Sbjct: 51 LNPVFGGSGPALTGLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH-- 108
Query: 66 TSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96
G++AEEF +I LW G RY SP+ FK+
Sbjct: 109 -KGEVAEEFGIIXKALWTGQYRYISPKDFKI 138
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYS-KTSGKLAEEFQ 75
+ PGL GL NLGNT ++NS LQCLSNT+PL +YF+ E++ + G++AE +
Sbjct: 4 IQPGLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYA 63
Query: 76 LIFNMLWAGDSRYFSPQKFKVKHELVGKF 104
+ +W+G + +P+ FK + VG+F
Sbjct: 64 ELIKQMWSGRDAHVAPRMFKTQ---VGRF 89
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL GL+NLGNTC++NSILQCLSNT LR+Y + S L EEF +
Sbjct: 34 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 93
Query: 81 LWAGD-SRYFSPQKFKVK 97
+W + SP +FK +
Sbjct: 94 IWTSSPNDVVSPSEFKTQ 111
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL GL+NLGNTC++NSILQCLSNT LR+Y + S L EEF +
Sbjct: 8 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 67
Query: 81 LW-AGDSRYFSPQKFKVK 97
+W + + SP +FK +
Sbjct: 68 IWTSSPNDVVSPSEFKTQ 85
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL GL+NLGNTC++NSILQCLSNT LR+Y + S L EEF +
Sbjct: 27 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 86
Query: 81 LW-AGDSRYFSPQKFKVK 97
+W + + SP +FK +
Sbjct: 87 IWTSSPNDVVSPSEFKTQ 104
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYSKTSGKLAEEFQL 76
+G G GL+NLGNTC++N++LQCLS+T PLR++ + +F++ + + +L E F
Sbjct: 12 LGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFAD 69
Query: 77 IFNMLWAGDS-RYFSPQKFK 95
+ LW DS +P +F+
Sbjct: 70 VIGALWHPDSCEAVNPTRFR 89
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex
With Ubiquitin
Length = 348
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL GL+NLGNT ++NSILQCLSNT LR+Y + S L EEF +
Sbjct: 8 GLAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 67
Query: 81 LW-AGDSRYFSPQKFKVK 97
+W + + SP +FK +
Sbjct: 68 IWTSSPNDVVSPSEFKTQ 85
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
G GL+NLGNTC++N++LQCLS+T PLR++ + +F++ + + +L E F +
Sbjct: 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 59
Query: 80 MLWAGDS-RYFSPQKFKV 96
LW DS +P +F+
Sbjct: 60 ALWHPDSCEAVNPTRFRA 77
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 58.9 bits (141), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFV-TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
G GL+NLGNTC++N++LQCLS+T PLR++ + +F++ + + +L E F +
Sbjct: 21 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 78
Query: 80 MLWAGDS-RYFSPQKFK 95
LW DS +P +F+
Sbjct: 79 ALWHPDSCEAVNPTRFR 95
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIF 78
GPG TG++NLGN+CY+NS++Q L + + +F+R K ++ + IF
Sbjct: 341 GPGYTGIRNLGNSCYLNSVVQVL--------FSIPDFQR-----------KYVDKLEKIF 381
Query: 79 NMLWAGDSRYFSPQKFKVKHELV 101
++ FS Q K+ H L+
Sbjct: 382 QNAPTDPTQDFSTQVAKLGHGLL 404
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL+GL N+GNTC+++SILQCL + YF+ + SM+ +S N
Sbjct: 140 GLSGLINMGNTCFMSSILQCLIHNP----YFI---RHSMSQIHSN-------------NC 179
Query: 81 LWAGDSRYFSPQKFKVKHELVGKFKVK 107
+ FS K+ HEL G K
Sbjct: 180 KVRSPDKCFSCALDKIVHELYGALNTK 206
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL+GL N+G+TC+++SILQCL + YF+ + SM+ +S N
Sbjct: 135 GLSGLINMGSTCFMSSILQCLIHNP----YFI---RHSMSQIHSN-------------NC 174
Query: 81 LWAGDSRYFSPQKFKVKHELVGKFKVK 107
+ FS K+ HEL G K
Sbjct: 175 KVRSPDKCFSCALDKIVHELYGALNTK 201
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
GL+GL N+G+TC+++SILQCL + YF+ + SM+ +S N
Sbjct: 140 GLSGLINMGSTCFMSSILQCLIHNP----YFI---RHSMSQIHSN-------------NC 179
Query: 81 LWAGDSRYFSPQKFKVKHELVGKFKVK 107
+ FS K+ HEL G K
Sbjct: 180 KVRSPDKCFSCALDKIVHELYGALNTK 206
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLRE 49
G GLKN G TCY+NS+LQ L T+ LR+
Sbjct: 174 GYVGLKNQGATCYMNSLLQTLFFTNQLRK 202
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLRE 49
GL NLGNTCY+N+ +QC+ + L++
Sbjct: 16 GLTNLGNTCYMNATVQCIRSVPELKD 41
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
Length = 353
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLR 48
G GLKN G TCY+NS+LQ L T+ LR
Sbjct: 5 GYVGLKNQGATCYMNSLLQTLFFTNQLR 32
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal
Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At
1.74 A Resolution
Length = 415
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLRE 49
G KN GNTCY+N+ LQ L + LR+
Sbjct: 26 GFKNXGNTCYLNATLQALYRVNDLRD 51
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLR 48
G GLKN G TCY NS+LQ L T+ LR
Sbjct: 5 GYVGLKNQGATCYXNSLLQTLFFTNQLR 32
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 51 FVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQK-------FKVKHELVGK 103
+ E + + +KT GKLA + W D +F P K F +K VG
Sbjct: 608 LIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGD 667
Query: 104 FKVKVDKRLGKF 115
+ K +++ F
Sbjct: 668 VEYKAGQQIATF 679
>pdb|3Q88|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Ribose 1,5-Bisphosphate.
pdb|3Q7I|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With 6-Phosphogluconic Acid
Length = 543
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 80 MLWAGDSR-YFSPQKFKVKHELVGKFKVKVDKRLGKFKVKHKEV 122
ML+ DS+ Y Q +K+E K DKR+ KF +KH+ +
Sbjct: 4 MLFCDDSKKYLKEQNINLKNEFD-----KDDKRVEKFSLKHQNI 42
>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 498
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 53 TEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVG 102
TE R Y K K E +Q++ LW + R Q+ ++ L+G
Sbjct: 421 TEAPRGALLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIG 470
>pdb|3MJ5|A Chain A, Severe Acute Respiratory Syndrome-Coronavirus Papain-Like
Protease Inhibitors: Design, Synthesis, Protein-Ligand
X-Ray Structure And Biological Evaluation
pdb|3MJ5|B Chain B, Severe Acute Respiratory Syndrome-Coronavirus Papain-Like
Protease Inhibitors: Design, Synthesis, Protein-Ligand
X-Ray Structure And Biological Evaluation
Length = 316
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 15 FWTVGPGLTGLKNLGNTCYINSILQCLS------NTSPLREYF-------VTEFKRSMTA 61
F VG GLT +K N CY++S+L L N L+E + F + A
Sbjct: 96 FPQVG-GLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILA 154
Query: 62 AYSKTSGKLAEEFQLIFNML 81
+KT G+L + + + ++L
Sbjct: 155 YSNKTVGELGDVRETMTHLL 174
>pdb|2FE8|A Chain A, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
pdb|2FE8|B Chain B, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
pdb|2FE8|C Chain C, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
Length = 315
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 15 FWTVGPGLTGLKNLGNTCYINSILQCLS------NTSPLREYF-------VTEFKRSMTA 61
F VG GLT +K N CY++S+L L N L+E + F + A
Sbjct: 96 FPQVG-GLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILA 154
Query: 62 AYSKTSGKLAEEFQLIFNML 81
+KT G+L + + + ++L
Sbjct: 155 YSNKTVGELGDVRETMTHLL 174
>pdb|3LJK|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis.
pdb|3M5P|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Fructose-6-Phosphate
Length = 543
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 81 LWAGDSR-YFSPQKFKVKHELVGKFKVKVDKRLGKFKVKHKEV 122
L+ DS+ Y Q +K+E K DKR+ KF +KH+ +
Sbjct: 5 LFCDDSKKYLKEQNINLKNEFD-----KDDKRVEKFSLKHQNI 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,549,999
Number of Sequences: 62578
Number of extensions: 129002
Number of successful extensions: 494
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 25
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)