Query psy10716
Match_columns 123
No_of_seqs 178 out of 1059
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 16:47:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02669 Peptidase_C19M A subfa 99.9 2E-21 4.3E-26 151.9 8.4 94 19-116 116-214 (440)
2 COG5560 UBP12 Ubiquitin C-term 99.8 2E-21 4.2E-26 153.9 5.8 96 20-116 263-362 (823)
3 cd02666 Peptidase_C19J A subfa 99.8 1.1E-20 2.5E-25 143.6 6.7 87 22-115 1-104 (343)
4 cd02658 Peptidase_C19B A subfa 99.8 1.5E-20 3.2E-25 140.5 6.9 91 24-116 1-107 (311)
5 KOG1865|consensus 99.8 3.7E-20 7.9E-25 145.0 6.4 109 5-117 91-201 (545)
6 cd02668 Peptidase_C19L A subfa 99.8 1E-19 2.2E-24 137.1 7.1 89 24-116 1-95 (324)
7 cd02657 Peptidase_C19A A subfa 99.8 1.7E-19 3.6E-24 134.4 7.5 90 24-117 1-98 (305)
8 cd02660 Peptidase_C19D A subfa 99.8 2E-19 4.3E-24 135.1 7.3 93 23-117 1-96 (328)
9 cd02661 Peptidase_C19E A subfa 99.8 2.8E-19 6E-24 132.4 7.2 92 22-117 1-94 (304)
10 PF00443 UCH: Ubiquitin carbox 99.8 1.8E-18 3.8E-23 124.4 6.9 96 22-117 1-101 (269)
11 cd02664 Peptidase_C19H A subfa 99.8 2E-18 4.3E-23 130.4 6.9 87 24-117 1-89 (327)
12 cd02671 Peptidase_C19O A subfa 99.7 3.8E-18 8.3E-23 129.4 7.4 91 19-116 21-112 (332)
13 cd02659 peptidase_C19C A subfa 99.7 6.8E-18 1.5E-22 127.0 5.4 91 21-116 1-93 (334)
14 KOG0944|consensus 99.7 3.4E-17 7.4E-22 130.5 6.0 110 4-117 292-412 (763)
15 cd02663 Peptidase_C19G A subfa 99.7 6.3E-17 1.4E-21 120.7 5.3 70 24-117 1-73 (300)
16 COG5533 UBP5 Ubiquitin C-termi 99.7 9.3E-17 2E-21 119.1 5.8 99 19-117 68-170 (415)
17 cd02667 Peptidase_C19K A subfa 99.6 1.1E-15 2.4E-20 113.1 4.3 30 24-53 1-30 (279)
18 KOG1873|consensus 99.6 8.4E-15 1.8E-19 118.1 7.0 99 17-116 200-313 (877)
19 KOG1863|consensus 99.5 1.9E-14 4E-19 122.7 6.1 101 17-121 164-268 (1093)
20 KOG1868|consensus 99.5 3.2E-14 6.9E-19 115.2 5.5 100 18-117 297-399 (653)
21 COG5077 Ubiquitin carboxyl-ter 99.5 1.6E-14 3.5E-19 117.0 3.1 98 17-121 188-288 (1089)
22 cd02662 Peptidase_C19F A subfa 99.3 1E-12 2.3E-17 95.4 3.6 32 24-55 1-32 (240)
23 COG5207 UBP14 Isopeptidase T [ 99.2 5.2E-12 1.1E-16 99.1 4.1 94 20-117 301-402 (749)
24 KOG1870|consensus 99.2 1.4E-11 3.1E-16 103.1 4.8 101 16-116 240-343 (842)
25 KOG1867|consensus 99.1 6.9E-11 1.5E-15 93.8 5.0 97 19-118 158-257 (492)
26 PF13423 UCH_1: Ubiquitin carb 99.1 1E-10 2.3E-15 87.1 5.3 91 23-120 1-96 (295)
27 KOG1866|consensus 98.9 1.1E-09 2.4E-14 89.1 4.2 102 13-116 86-189 (944)
28 KOG2026|consensus 98.9 2.1E-09 4.6E-14 81.9 4.3 91 19-116 131-226 (442)
29 KOG1872|consensus 98.8 1.6E-09 3.5E-14 84.3 2.9 77 20-99 103-180 (473)
30 cd02672 Peptidase_C19P A subfa 98.8 5.9E-09 1.3E-13 77.2 4.7 54 19-78 12-65 (268)
31 cd02674 Peptidase_C19R A subfa 98.4 7.5E-08 1.6E-12 68.8 1.6 20 24-43 1-20 (230)
32 KOG1871|consensus 98.3 7.5E-07 1.6E-11 68.3 3.2 65 15-82 21-86 (420)
33 cd02257 Peptidase_C19 Peptidas 98.2 4.1E-07 8.8E-12 64.2 1.6 20 24-43 1-20 (255)
34 cd02665 Peptidase_C19I A subfa 97.6 6.4E-05 1.4E-09 54.6 3.0 22 24-45 1-22 (228)
35 KOG1864|consensus 97.5 7.4E-05 1.6E-09 60.9 2.9 36 19-55 29-64 (587)
36 KOG1275|consensus 97.3 0.00079 1.7E-08 56.9 6.9 75 19-101 496-570 (1118)
37 cd02673 Peptidase_C19Q A subfa 96.8 0.001 2.2E-08 48.7 2.7 31 25-55 2-32 (245)
38 KOG4598|consensus 96.4 0.002 4.3E-08 53.5 2.3 37 19-55 84-120 (1203)
39 PF05408 Peptidase_C28: Foot-a 94.9 0.016 3.5E-07 40.6 1.8 24 20-43 31-54 (193)
40 KOG1864|consensus 90.1 0.3 6.5E-06 40.3 3.1 97 18-116 228-329 (587)
41 cd02670 Peptidase_C19N A subfa 83.4 0.64 1.4E-05 34.1 1.4 20 24-43 1-21 (241)
42 PF13405 EF-hand_6: EF-hand do 52.1 26 0.00057 16.5 3.2 26 74-99 2-27 (31)
43 KOG1868|consensus 48.8 5.5 0.00012 33.5 -0.1 15 25-39 205-219 (653)
44 PF12295 Symplekin_C: Sympleki 44.2 52 0.0011 23.1 4.2 52 31-83 110-161 (183)
45 PF00036 EF-hand_1: EF hand; 43.2 40 0.00086 16.0 2.9 26 74-99 2-27 (29)
46 PF14855 PapJ: Pilus-assembly 37.3 13 0.00028 25.9 0.3 13 28-40 13-25 (187)
47 cd01857 HSR1_MMR1 HSR1/MMR1. 36.6 20 0.00044 23.3 1.2 19 20-38 86-104 (141)
48 PF15499 Peptidase_C98: Ubiqui 35.9 79 0.0017 23.8 4.2 29 26-54 6-34 (275)
49 KOG1867|consensus 33.4 11 0.00025 30.6 -0.5 36 13-48 68-103 (492)
50 KOG3120|consensus 27.8 2.3E+02 0.0049 21.0 5.4 74 35-119 31-117 (256)
51 KOG1871|consensus 26.1 20 0.00044 28.3 -0.2 43 19-61 175-217 (420)
52 PF05379 Peptidase_C23: Carlav 23.5 1.9E+02 0.0041 17.8 5.4 52 29-99 2-53 (89)
53 COG1100 GTPase SAR1 and relate 22.7 43 0.00094 23.1 0.9 25 19-43 7-31 (219)
54 smart00054 EFh EF-hand, calciu 21.6 83 0.0018 13.0 2.6 24 75-98 3-26 (29)
No 1
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.85 E-value=2e-21 Score=151.94 Aligned_cols=94 Identities=24% Similarity=0.440 Sum_probs=79.4
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCC--CCccChHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGD--SRYFSPQKFK 95 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~--~~~i~P~~~~ 95 (123)
.+|++||.|+||||||||+||+|+|+|+||++++... ..... ....++.++++.+++++|++. ..+++|.+|+
T Consensus 116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~----~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl 191 (440)
T cd02669 116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIK----DRKSELVKRLSELIRKIWNPRNFKGHVSPHELL 191 (440)
T ss_pred cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhcccccccc----CCCcHHHHHHHHHHHHHhccccCCCccCHHHHH
Confidence 5799999999999999999999999999999999876 22111 123589999999999999875 4699999999
Q ss_pred HHHHhh--CCCCchhhccccccc
Q psy10716 96 VKHELV--GKFKVKVDKRLGKFK 116 (123)
Q Consensus 96 ~~l~~~--~~f~~~~~~~~~~~~ 116 (123)
.++... ..|....++|++||+
T Consensus 192 ~~l~~~~~~~f~~~~QqDA~EFl 214 (440)
T cd02669 192 QAVSKVSKKKFSITEQSDPVEFL 214 (440)
T ss_pred HHHHhhcccccCCcccCCHHHHH
Confidence 999765 358889999999995
No 2
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-21 Score=153.93 Aligned_cols=96 Identities=33% Similarity=0.599 Sum_probs=85.5
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCC--CChhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy10716 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYS--KTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96 (123)
Q Consensus 20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~--~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~ 96 (123)
.|.+||+|+||||||||.||||.|+++||+||++.. ..+++.. | +.++.++.+++.|+.+++.++..+++|..|+.
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~-Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~ 341 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEE-NPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK 341 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhccc-CccchhhhHHHHHHHHHHHHhCccccccChHHHHH
Confidence 488999999999999999999999999999999999 8888886 4 77899999999999999999988999999999
Q ss_pred HHHhh-CCCCchhhccccccc
Q psy10716 97 KHELV-GKFKVKVDKRLGKFK 116 (123)
Q Consensus 97 ~l~~~-~~f~~~~~~~~~~~~ 116 (123)
.+..+ ..|.--+++|++||.
T Consensus 342 tIG~fn~~fsGy~QQDSqEFi 362 (823)
T COG5560 342 TIGSFNEEFSGYDQQDSQEFI 362 (823)
T ss_pred HHhhhHHHhcCccchhHHHHH
Confidence 98654 446777778888874
No 3
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.82 E-value=1.1e-20 Score=143.62 Aligned_cols=87 Identities=28% Similarity=0.441 Sum_probs=68.3
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhh-----hcc------cCC-----CChhHHHHHHHHHHHHHHcC
Q psy10716 22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRS-----MTA------AYS-----KTSGKLAEEFQLIFNMLWAG 84 (123)
Q Consensus 22 ~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~-----~~~------~~~-----~~~~~l~~~l~~ll~~l~~~ 84 (123)
|+||.|+||||||||+||+|+++|+||+++++.. ... ... ... ....+++.+++.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999875 211 000 000 11236999999999999999
Q ss_pred CCCccChHHHHHHHHhhCCCCchhhcccccc
Q psy10716 85 DSRYFSPQKFKVKHELVGKFKVKVDKRLGKF 115 (123)
Q Consensus 85 ~~~~i~P~~~~~~l~~~~~f~~~~~~~~~~~ 115 (123)
...+++|..++..+.. .++|++||
T Consensus 81 ~~~~v~P~~~l~~l~~-------~QQDa~Ef 104 (343)
T cd02666 81 NTRSVTPSKELAYLAL-------RQQDVTEC 104 (343)
T ss_pred CCCccCcHHHHHhccc-------cccchHHH
Confidence 8889999999987543 56666666
No 4
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.82 E-value=1.5e-20 Score=140.48 Aligned_cols=91 Identities=24% Similarity=0.308 Sum_probs=73.1
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCC--------------Cc
Q psy10716 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--------------RY 88 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--------------~~ 88 (123)
||.|+||||||||+||||+++|+||+++++.. ...... ..+..++.++|++++..|+.... .+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDV--VDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCc--CCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 89999999999999999999999999998744 211111 23356899999999999987532 37
Q ss_pred cChHHHHHHHHh-hCCCCchhhccccccc
Q psy10716 89 FSPQKFKVKHEL-VGKFKVKVDKRLGKFK 116 (123)
Q Consensus 89 i~P~~~~~~l~~-~~~f~~~~~~~~~~~~ 116 (123)
++|..|+.++.. .+.|....++|++||+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl 107 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFL 107 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHH
Confidence 999999999865 3668888899999986
No 5
>KOG1865|consensus
Probab=99.81 E-value=3.7e-20 Score=144.95 Aligned_cols=109 Identities=26% Similarity=0.322 Sum_probs=91.5
Q ss_pred eccccccccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHc
Q psy10716 5 TFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWA 83 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~ 83 (123)
+|..+.+.--+.+.....+||.|+|||||+||+||||.++|+|.+|+++.. .+.|.+. ..|++|+|+..+.....
T Consensus 91 Lfp~e~~~~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~----~~C~lc~~q~hi~~A~~ 166 (545)
T KOG1865|consen 91 LFPYEKLPLSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRA----KFCMLCTFQAHITRALH 166 (545)
T ss_pred ccccceecccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcccc----CeeeehHHHHHHHHHhc
Confidence 444455442344456789999999999999999999999999999999988 6666544 68999999999988888
Q ss_pred CCCCccChHHHHHHHHhhC-CCCchhhcccccccc
Q psy10716 84 GDSRYFSPQKFKVKHELVG-KFKVKVDKRLGKFKV 117 (123)
Q Consensus 84 ~~~~~i~P~~~~~~l~~~~-~f~~~~~~~~~~~~~ 117 (123)
....+++|..+++.++.++ .|....++|++||+.
T Consensus 167 ~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr 201 (545)
T KOG1865|consen 167 NPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLR 201 (545)
T ss_pred CCCCccChHHHHHhhhhhcccccCCchhhHHHHHH
Confidence 8877999999999998774 599999999999964
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.80 E-value=1e-19 Score=137.06 Aligned_cols=89 Identities=26% Similarity=0.371 Sum_probs=72.1
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhccc---CC--CChhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy10716 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA---YS--KTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~---~~--~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~ 97 (123)
||.|+||||||||+||+|+++|+||++++... ....... .+ ....+++++++.++..||.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 89999999999999999999999999998876 2211100 00 123589999999999999998889999999998
Q ss_pred HHhhCCCCchhhccccccc
Q psy10716 98 HELVGKFKVKVDKRLGKFK 116 (123)
Q Consensus 98 l~~~~~f~~~~~~~~~~~~ 116 (123)
++ +....++|++||+
T Consensus 81 l~----~~~~~QqDa~EFl 95 (324)
T cd02668 81 LG----LDTGQQQDAQEFS 95 (324)
T ss_pred hC----CCCccccCHHHHH
Confidence 73 5666788888886
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.79 E-value=1.7e-19 Score=134.41 Aligned_cols=90 Identities=28% Similarity=0.438 Sum_probs=72.5
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHh-h
Q psy10716 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHEL-V 101 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~~-~ 101 (123)
||.|+||||||||+||+|+++|+|++++++.. ... .. .....++++++++|+..|+.+. .+++|..|+..+.. .
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~--~~-~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR--GA-NQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc--cc-ccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998876 321 00 1234689999999999999876 48999999999854 4
Q ss_pred CCCC------chhhcccccccc
Q psy10716 102 GKFK------VKVDKRLGKFKV 117 (123)
Q Consensus 102 ~~f~------~~~~~~~~~~~~ 117 (123)
+.|. ...++|++||+.
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~ 98 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWS 98 (305)
T ss_pred cCcccccCCCCccccCHHHHHH
Confidence 5563 337888888863
No 8
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.79 E-value=2e-19 Score=135.08 Aligned_cols=93 Identities=25% Similarity=0.390 Sum_probs=74.0
Q ss_pred cccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHh
Q psy10716 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQKFKVKHEL 100 (123)
Q Consensus 23 ~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~-~~~~~~i~P~~~~~~l~~ 100 (123)
+||.|+||||||||+||+|+|+|+|+++++... ...... .....++.+++++++..|+ .+...+++|..+++++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLS--CSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccccc--CCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 699999999999999999999999999999875 321111 1234689999999999995 444568999999999854
Q ss_pred h-CCCCchhhcccccccc
Q psy10716 101 V-GKFKVKVDKRLGKFKV 117 (123)
Q Consensus 101 ~-~~f~~~~~~~~~~~~~ 117 (123)
. ..|....++|++||+.
T Consensus 79 ~~~~f~~~~QqDa~Efl~ 96 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQ 96 (328)
T ss_pred hchhhcccccccHHHHHH
Confidence 4 3577777888998864
No 9
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.79 E-value=2.8e-19 Score=132.37 Aligned_cols=92 Identities=25% Similarity=0.446 Sum_probs=76.4
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHh
Q psy10716 22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHEL 100 (123)
Q Consensus 22 ~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~~ 100 (123)
++||.|+||||||||+||+|+++|+|++++++.. ..... ....++.++++.++..++.+....++|..|.+++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~ 76 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC----NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQ 76 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc----CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHH
Confidence 5899999999999999999999999999998765 32222 123589999999999999888889999999998865
Q ss_pred h-CCCCchhhcccccccc
Q psy10716 101 V-GKFKVKVDKRLGKFKV 117 (123)
Q Consensus 101 ~-~~f~~~~~~~~~~~~~ 117 (123)
. +.|....++|+.||+.
T Consensus 77 ~~~~f~~~~qqDa~Efl~ 94 (304)
T cd02661 77 ISKHFRIGRQEDAHEFLR 94 (304)
T ss_pred HHHhhcCcchhhHHHHHH
Confidence 4 5588778889988863
No 10
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.76 E-value=1.8e-18 Score=124.43 Aligned_cols=96 Identities=29% Similarity=0.552 Sum_probs=76.1
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhccc-CCCChhHHHHHHHHHHHHHHcC--CCCccChHHHHHH
Q psy10716 22 LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAG--DSRYFSPQKFKVK 97 (123)
Q Consensus 22 ~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~-~~~~~~~l~~~l~~ll~~l~~~--~~~~i~P~~~~~~ 97 (123)
++||.|.||||||||+||+|+++|+|++++++.. ....... ......++.++++.++..||.. ....++|..+..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 5899999999999999999999999999999873 1111111 0233457999999999999988 5679999999999
Q ss_pred HHhh-CCCCchhhcccccccc
Q psy10716 98 HELV-GKFKVKVDKRLGKFKV 117 (123)
Q Consensus 98 l~~~-~~f~~~~~~~~~~~~~ 117 (123)
+... ..|....++|+.||+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~ 101 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLS 101 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHH
T ss_pred ccccccccccccccchhhhhc
Confidence 9764 4577888899999863
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.75 E-value=2e-18 Score=130.37 Aligned_cols=87 Identities=28% Similarity=0.361 Sum_probs=70.2
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHH-HHHHHHhh
Q psy10716 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQK-FKVKHELV 101 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~-~~~~l~~~ 101 (123)
||.|+||||||||+||+|+++|+||+++++.. ... ....++..+++.++..|..+...++.|.. ++.+.. .
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-~ 73 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-P 73 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc-c
Confidence 89999999999999999999999999999876 211 11246888999999888877667788876 666543 4
Q ss_pred CCCCchhhcccccccc
Q psy10716 102 GKFKVKVDKRLGKFKV 117 (123)
Q Consensus 102 ~~f~~~~~~~~~~~~~ 117 (123)
..|....++|++||+.
T Consensus 74 ~~f~~~~QqDa~EFl~ 89 (327)
T cd02664 74 PWFTPGSQQDCSEYLR 89 (327)
T ss_pred cccCCCCcCCHHHHHH
Confidence 5688888999999874
No 12
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=3.8e-18 Score=129.35 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l 98 (123)
..+++||.|+||||||||+||+|+|+|+||+.+++..... . ...-.+.+..++..++.......+|..|+.++
T Consensus 21 ~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~------~-~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l 93 (332)
T cd02671 21 LLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI------S-SVEQLQSSFLLNPEKYNDELANQAPRRLLNAL 93 (332)
T ss_pred CCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc------C-cHHHHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 5799999999999999999999999999999987653000 0 11122233344566666655577899999999
Q ss_pred Hhh-CCCCchhhccccccc
Q psy10716 99 ELV-GKFKVKVDKRLGKFK 116 (123)
Q Consensus 99 ~~~-~~f~~~~~~~~~~~~ 116 (123)
+.. +.|....++|++||+
T Consensus 94 ~~~~~~f~~~~QQDA~EFl 112 (332)
T cd02671 94 REVNPMYEGYLQHDAQEVL 112 (332)
T ss_pred HHhccccCCccccCHHHHH
Confidence 764 568888999999995
No 13
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.72 E-value=6.8e-18 Score=127.04 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=68.6
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q psy10716 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHE 99 (123)
Q Consensus 21 ~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~ 99 (123)
|++||.|+||||||||+||+|+++|+|++++++.. .... ....++.++++.++..|+.+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~-----~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDD-----DDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccC-----cccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 68999999999999999999999999999999863 1111 12357999999999999988766666655541111
Q ss_pred h-hCCCCchhhccccccc
Q psy10716 100 L-VGKFKVKVDKRLGKFK 116 (123)
Q Consensus 100 ~-~~~f~~~~~~~~~~~~ 116 (123)
. ...+....++|++||+
T Consensus 76 ~~~~~~~~~~QqDa~Efl 93 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFF 93 (334)
T ss_pred CCCCCCCcccchhHHHHH
Confidence 1 2346677788888885
No 14
>KOG0944|consensus
Probab=99.69 E-value=3.4e-17 Score=130.54 Aligned_cols=110 Identities=22% Similarity=0.388 Sum_probs=87.4
Q ss_pred eeccccccccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHc
Q psy10716 4 ITFISYRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~ 83 (123)
+.+.+..++|.+ ++|++||+|+||+||||||+|+|++++.|....+.......... ..+..++.+++.+|++.|.+
T Consensus 292 ~~esg~~l~p~~---gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~-~~P~ndf~cQ~~Kl~~gm~s 367 (763)
T KOG0944|consen 292 LEESGAPLEPLF---GPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYP-KDPTNDFNCQLAKLLHGMLS 367 (763)
T ss_pred eccCCCcccccc---CCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCC-CCcchhHHHHHHHHHHHhhc
Confidence 455666778877 89999999999999999999999999999998877631111111 24567999999999999987
Q ss_pred CCCC----------ccChHHHHHHHHh-hCCCCchhhcccccccc
Q psy10716 84 GDSR----------YFSPQKFKVKHEL-VGKFKVKVDKRLGKFKV 117 (123)
Q Consensus 84 ~~~~----------~i~P~~~~~~l~~-~~~f~~~~~~~~~~~~~ 117 (123)
+... .|+|..|+..+.. -+.|....+||++||++
T Consensus 368 gkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFll 412 (763)
T KOG0944|consen 368 GKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLL 412 (763)
T ss_pred CcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHH
Confidence 7643 5899999999854 56688888889999864
No 15
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.67 E-value=6.3e-17 Score=120.75 Aligned_cols=70 Identities=30% Similarity=0.446 Sum_probs=60.9
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCC--CccChHHHHHHHHhh
Q psy10716 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQKFKVKHELV 101 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--~~i~P~~~~~~l~~~ 101 (123)
||.|+||||||||+||+|+| . +++++|+.+|..||.+.. .+++|..|++++...
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~------------------~------~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~ 56 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF------------------E------NLLTCLKDLFESISEQKKRTGVISPKKFITRLKRE 56 (300)
T ss_pred CccCCCcceehhHHHHHhhh------------------H------HHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhh
Confidence 89999999999999999987 1 688899999999998753 379999999999654
Q ss_pred -CCCCchhhcccccccc
Q psy10716 102 -GKFKVKVDKRLGKFKV 117 (123)
Q Consensus 102 -~~f~~~~~~~~~~~~~ 117 (123)
+.|....++|++||+.
T Consensus 57 ~~~f~~~~QqDA~EFl~ 73 (300)
T cd02663 57 NELFDNYMHQDAHEFLN 73 (300)
T ss_pred cCCCCCCccccHHHHHH
Confidence 5688999999999973
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.3e-17 Score=119.07 Aligned_cols=99 Identities=22% Similarity=0.389 Sum_probs=77.0
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccC-CCChh-HHHHHHHHHHHHHHcCCCCccChHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAY-SKTSG-KLAEEFQLIFNMLWAGDSRYFSPQKFK 95 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~-~~~~~-~l~~~l~~ll~~l~~~~~~~i~P~~~~ 95 (123)
...+.||.|.|||||||++||||+.+..+...+.... ...++.+. .+..+ .....|.-+...+-......|+|..|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 3578999999999999999999999999999665555 55555541 23344 455566666677776666799999999
Q ss_pred HHHHhh-CCCCchhhcccccccc
Q psy10716 96 VKHELV-GKFKVKVDKRLGKFKV 117 (123)
Q Consensus 96 ~~l~~~-~~f~~~~~~~~~~~~~ 117 (123)
..+.-. .-|...+++|++||.+
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~ 170 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLI 170 (415)
T ss_pred HHHccccccccccchhhHHHHHH
Confidence 999654 5599999999999864
No 17
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.58 E-value=1.1e-15 Score=113.07 Aligned_cols=30 Identities=53% Similarity=0.933 Sum_probs=28.8
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHHh
Q psy10716 24 GLKNLGNTCYINSILQCLSNTSPLREYFVT 53 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~ 53 (123)
||.|+||||||||+||+|+|+|+||+++++
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~ 30 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE 30 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999999999999999999999865
No 18
>KOG1873|consensus
Probab=99.55 E-value=8.4e-15 Score=118.15 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=79.6
Q ss_pred cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhh---hcccC----------CCChhHHHHHHHHHHHHHH
Q psy10716 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRS---MTAAY----------SKTSGKLAEEFQLIFNMLW 82 (123)
Q Consensus 17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~---~~~~~----------~~~~~~l~~~l~~ll~~l~ 82 (123)
+.....+||.|+|||||+|||+|+|..+|.||+.|.... ... +..+. -....+++.+|+. +..|.
T Consensus 200 ~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~ 278 (877)
T KOG1873|consen 200 RRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMS 278 (877)
T ss_pred cccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhh
Confidence 445678999999999999999999999999999998876 321 11110 1344688899998 77788
Q ss_pred cCCCCccChHHHHHHH-HhhCCCCchhhccccccc
Q psy10716 83 AGDSRYFSPQKFKVKH-ELVGKFKVKVDKRLGKFK 116 (123)
Q Consensus 83 ~~~~~~i~P~~~~~~l-~~~~~f~~~~~~~~~~~~ 116 (123)
.+...+++|..|+..+ .+.++|.-.+++|++|.+
T Consensus 279 e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELL 313 (877)
T KOG1873|consen 279 ETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELL 313 (877)
T ss_pred hccCCccCHHHHHHHHHHhCCcccccccccHHHHH
Confidence 8888899999999998 567889999999999864
No 19
>KOG1863|consensus
Probab=99.51 E-value=1.9e-14 Score=122.73 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=77.8
Q ss_pred cCCCCc-cccccCCchhhHHHHHHHHhCCHHHHHHHHhcch-hhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHH
Q psy10716 17 TVGPGL-TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFK-RSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKF 94 (123)
Q Consensus 17 ~~~~~~-~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~-~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~ 94 (123)
+...|. +||.|+||||||||+||+|+.++.||+.+++.+. ... .++...+..+++.+|..|+.++.++++|..+
T Consensus 164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~----~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~ 239 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGH----EDPRRSIPLALQRLFYELQMSKRKYVDTSEL 239 (1093)
T ss_pred hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCc----ccccchHHHHHHHHHHHHhhcCCCCcCchhh
Confidence 344555 9999999999999999999999999999999872 111 2334579999999999999999889999999
Q ss_pred HHHHHhhC--CCCchhhcccccccccccc
Q psy10716 95 KVKHELVG--KFKVKVDKRLGKFKVKHKE 121 (123)
Q Consensus 95 ~~~l~~~~--~f~~~~~~~~~~~~~~~~~ 121 (123)
...+...+ .|.+++-++....++|-+|
T Consensus 240 ~~~~~~~~~~~~~QqDvqEf~~~l~d~LE 268 (1093)
T KOG1863|consen 240 TKSLGWDSNDSFEQQDVQEFLTKLLDWLE 268 (1093)
T ss_pred hhhhhcccccHHhhhhHHHHHHHHHHHHH
Confidence 99986554 3444444444444555444
No 20
>KOG1868|consensus
Probab=99.49 E-value=3.2e-14 Score=115.16 Aligned_cols=100 Identities=28% Similarity=0.433 Sum_probs=82.1
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcC-CCCccChHHHH
Q psy10716 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAG-DSRYFSPQKFK 95 (123)
Q Consensus 18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~-~~~~i~P~~~~ 95 (123)
...+.+||.|+|||||||++||||+.++.||..+++.. ...++.........+..++..++..+|.. ...++.|..|.
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~ 376 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFI 376 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHH
Confidence 35689999999999999999999999999998888887 66555221234458889999999998877 44589999999
Q ss_pred HHHHh-hCCCCchhhcccccccc
Q psy10716 96 VKHEL-VGKFKVKVDKRLGKFKV 117 (123)
Q Consensus 96 ~~l~~-~~~f~~~~~~~~~~~~~ 117 (123)
..+.. ...|....+++++||.+
T Consensus 377 ~~~~~y~~~~~~~~Qqd~qEfl~ 399 (653)
T KOG1868|consen 377 RVLKRYSPNFSGYSQQDAQEFLI 399 (653)
T ss_pred HHHhhcccccccccccchHHHHH
Confidence 99965 56688867899999987
No 21
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-14 Score=116.99 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=79.3
Q ss_pred cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy10716 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFK 95 (123)
Q Consensus 17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~ 95 (123)
++..|++||+|.|.||||||+||+|+.+..||+.++..+ ...- ...++..+++++|..|+.++ .+++..+|.
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~------grdSValaLQr~Fynlq~~~-~PvdTtelt 260 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR------GRDSVALALQRLFYNLQTGE-EPVDTTELT 260 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCC------ccchHHHHHHHHHHHHhccC-CCcchHHhh
Confidence 446899999999999999999999999999999999987 2221 23579999999999999887 699999998
Q ss_pred HHHHh--hCCCCchhhcccccccccccc
Q psy10716 96 VKHEL--VGKFKVKVDKRLGKFKVKHKE 121 (123)
Q Consensus 96 ~~l~~--~~~f~~~~~~~~~~~~~~~~~ 121 (123)
+.... ...|.+.+-++..+-+.|.+|
T Consensus 261 rsfgWds~dsf~QHDiqEfnrVl~DnLE 288 (1089)
T COG5077 261 RSFGWDSDDSFMQHDIQEFNRVLQDNLE 288 (1089)
T ss_pred hhcCcccchHHHHHhHHHHHHHHHHHHH
Confidence 88743 345666666666666666665
No 22
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.32 E-value=1e-12 Score=95.40 Aligned_cols=32 Identities=50% Similarity=0.850 Sum_probs=30.6
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF 55 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~ 55 (123)
||+|+||||||||+||+|+|+|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH
Confidence 89999999999999999999999999998865
No 23
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.2e-12 Score=99.15 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=72.9
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc---hhhhcccCCCChhHHHHHHHHHHHHHHcCCCC----ccChH
Q psy10716 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF---KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR----YFSPQ 92 (123)
Q Consensus 20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~---~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~----~i~P~ 92 (123)
.+++||.|+||+||+||++|.|+....+...+.... ...+.. +..++.|++.+|+..|...... .++|.
T Consensus 301 s~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~----P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~ 376 (749)
T COG5207 301 SPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKN----PLECLFCQLMKLLSKMKETPDNEYVNGISPL 376 (749)
T ss_pred CCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecC----CchhHHHHHHHHHhhccCCCCccccCCcChh
Confidence 349999999999999999999999888776654444 223322 2578999999999999876633 78999
Q ss_pred HHHHHHHh-hCCCCchhhcccccccc
Q psy10716 93 KFKVKHEL-VGKFKVKVDKRLGKFKV 117 (123)
Q Consensus 93 ~~~~~l~~-~~~f~~~~~~~~~~~~~ 117 (123)
.|+..+.. -+-|.-..++|++||++
T Consensus 377 ~fk~~igq~h~eFg~~~QQDA~EFLl 402 (749)
T COG5207 377 DFKMLIGQDHPEFGKFAQQDAHEFLL 402 (749)
T ss_pred hHHHHHcCCchhhhhhhhhhHHHHHH
Confidence 99999854 45577777788888864
No 24
>KOG1870|consensus
Probab=99.20 E-value=1.4e-11 Score=103.07 Aligned_cols=101 Identities=33% Similarity=0.601 Sum_probs=82.9
Q ss_pred ccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccC-CCChhHHHHHHHHHHHHHHcCCCCccChHH
Q psy10716 16 WTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAY-SKTSGKLAEEFQLIFNMLWAGDSRYFSPQK 93 (123)
Q Consensus 16 ~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~-~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~ 93 (123)
....+|.+||.|+|||||||+.+|||.+.+.++++++... ..+++... .+....+..++..+...+|......+.|..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 3446799999999999999999999999999999999988 55566651 266678999999999999999977899999
Q ss_pred HHHHHHhhC-CCCchhhccccccc
Q psy10716 94 FKVKHELVG-KFKVKVDKRLGKFK 116 (123)
Q Consensus 94 ~~~~l~~~~-~f~~~~~~~~~~~~ 116 (123)
+...+.... .|.-..++|+.||.
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~l 343 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELL 343 (842)
T ss_pred hhhhhhhccccccCcccccchhhh
Confidence 999986543 36666666665553
No 25
>KOG1867|consensus
Probab=99.12 E-value=6.9e-11 Score=93.76 Aligned_cols=97 Identities=26% Similarity=0.406 Sum_probs=81.6
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCC-CCccChHHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGD-SRYFSPQKFKV 96 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~-~~~i~P~~~~~ 96 (123)
..++.|+.|+|+||+||++||+|.+.+..+...+... ..+ .. ...+.++.+++.++++.+|++. ..+++|..+..
T Consensus 158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~--~~-~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~ 234 (492)
T KOG1867|consen 158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKE--PS-SSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLN 234 (492)
T ss_pred eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccC--CC-CCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHH
Confidence 5689999999999999999999999999888887776 311 11 2235799999999999999999 88999999999
Q ss_pred HHHhh-CCCCchhhccccccccc
Q psy10716 97 KHELV-GKFKVKVDKRLGKFKVK 118 (123)
Q Consensus 97 ~l~~~-~~f~~~~~~~~~~~~~~ 118 (123)
..... +.++...++|++||++.
T Consensus 235 ~~~k~~~~~~g~~Qqda~eF~~~ 257 (492)
T KOG1867|consen 235 LVWKHSPNLAGYEQQDAHEFLIA 257 (492)
T ss_pred HHHHhCcccccccccchHHHHHH
Confidence 99764 66888999999999864
No 26
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.11 E-value=1e-10 Score=87.15 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=74.3
Q ss_pred cccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHhh
Q psy10716 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQKFKVKHELV 101 (123)
Q Consensus 23 ~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~-~~~~~~i~P~~~~~~l~~~ 101 (123)
.||.|.+++||+||+||+|+++|++|+.++... ++.. ..|+.+++.-||+.|. .+......+..|.++++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~c~~-----e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~ 73 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--ECPK-----EFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWI 73 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--CCCc-----cccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcC
Confidence 599999999999999999999999999998875 2333 3799999999999999 8887788999999998655
Q ss_pred CC----CCchhhccccccccccc
Q psy10716 102 GK----FKVKVDKRLGKFKVKHK 120 (123)
Q Consensus 102 ~~----f~~~~~~~~~~~~~~~~ 120 (123)
+. ...++.+...+|.++++
T Consensus 74 ~~a~~l~~~~~iq~~~~Fll~~l 96 (295)
T PF13423_consen 74 PEAAALGLQQDIQSLNRFLLEQL 96 (295)
T ss_pred HHHHhcchhHHHHHHHHHHHHHH
Confidence 32 33566666777776654
No 27
>KOG1866|consensus
Probab=98.91 E-value=1.1e-09 Score=89.13 Aligned_cols=102 Identities=25% Similarity=0.410 Sum_probs=80.4
Q ss_pred cccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccCh
Q psy10716 13 IIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSP 91 (123)
Q Consensus 13 ~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P 91 (123)
|.-++.+.+.+||+|-|+|||||+++|-+.++|.+|+.++... ..+...- .-...+.++++.+|..+..++-.++.|
T Consensus 86 pVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~--s~~e~vl~~lQ~iF~hL~~s~lQyyVP 163 (944)
T KOG1866|consen 86 PVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDM--SGDEKVLRHLQVIFGHLAASQLQYYVP 163 (944)
T ss_pred CcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhh--cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3334666799999999999999999999999999999887766 3111100 011239999999999999999899999
Q ss_pred HHHHHHHHhhC-CCCchhhccccccc
Q psy10716 92 QKFKVKHELVG-KFKVKVDKRLGKFK 116 (123)
Q Consensus 92 ~~~~~~l~~~~-~f~~~~~~~~~~~~ 116 (123)
..|+..++..+ ..+..-++|+=||+
T Consensus 164 eg~Wk~Fr~~~~pln~reqhDA~eFf 189 (944)
T KOG1866|consen 164 EGFWKQFRLWGEPLNLREQHDALEFF 189 (944)
T ss_pred hhHHHHhhccCCccchHhhhhHHHHH
Confidence 99999998764 37777778877775
No 28
>KOG2026|consensus
Probab=98.87 E-value=2.1e-09 Score=81.94 Aligned_cols=91 Identities=27% Similarity=0.459 Sum_probs=77.1
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCC--CccChHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQKFK 95 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--~~i~P~~~~ 95 (123)
-+|.+||.|+-++-|.|+++|.|.+..++|++++... .. +....+++.|..+++++|.++. ..+||.++.
T Consensus 131 LpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~-------d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~l 203 (442)
T KOG2026|consen 131 LPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYF-------DNLTELVQRLGELIRKLWNPRNFKGHVSPHEFL 203 (442)
T ss_pred eeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccccc-------chhHHHHHHHHHHHHHhcChhhhcccCCHHHHH
Confidence 5799999999999999999999999999999998874 22 2346899999999999998884 389999999
Q ss_pred HHHHhh--CCCCchhhccccccc
Q psy10716 96 VKHELV--GKFKVKVDKRLGKFK 116 (123)
Q Consensus 96 ~~l~~~--~~f~~~~~~~~~~~~ 116 (123)
+++... .+|.+.-+.|.-+|.
T Consensus 204 qaV~~~s~k~f~i~~q~DpveFl 226 (442)
T KOG2026|consen 204 QAVMKLSKKRFRIGQQSDPVEFL 226 (442)
T ss_pred HHHHHHhhhheecCCCCCHHHHH
Confidence 999665 457777777777764
No 29
>KOG1872|consensus
Probab=98.85 E-value=1.6e-09 Score=84.30 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=61.5
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q psy10716 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (123)
Q Consensus 20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l 98 (123)
+-++|+.|+|||||||+.+|||-..++++..+.... .++.+.. -.....+..+++.+|+.|.+. .++.|..+...+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t-~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl 179 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDT-WERRRRISIETRTCFRPLCEK--GAVAPINLLQTL 179 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCch-hhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHH
Confidence 456799999999999999999999999998887665 3332221 122467899999999999988 699999998885
Q ss_pred H
Q psy10716 99 E 99 (123)
Q Consensus 99 ~ 99 (123)
.
T Consensus 180 ~ 180 (473)
T KOG1872|consen 180 S 180 (473)
T ss_pred H
Confidence 3
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.81 E-value=5.9e-09 Score=77.19 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=42.5
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIF 78 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll 78 (123)
..+.+||.|.|.|||+||+||+|+++|+||+++ .....++.. ..|+.+++..||
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~~~~~~~~~-----~~~l~~el~~lf 65 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-AIILVACPK-----ESCLLCELGYLF 65 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHH-HhhcccCCc-----CccHHHHHHHHH
Confidence 457999999999999999999999999999983 222222222 268888888877
No 31
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.44 E-value=7.5e-08 Score=68.76 Aligned_cols=20 Identities=85% Similarity=1.496 Sum_probs=19.0
Q ss_pred ccccCCchhhHHHHHHHHhC
Q psy10716 24 GLKNLGNTCYINSILQCLSN 43 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~ 43 (123)
||.|.|||||+||+||+|.+
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH
Confidence 89999999999999999965
No 32
>KOG1871|consensus
Probab=98.25 E-value=7.5e-07 Score=68.33 Aligned_cols=65 Identities=25% Similarity=0.201 Sum_probs=48.1
Q ss_pred cccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHH
Q psy10716 15 FWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLW 82 (123)
Q Consensus 15 ~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~ 82 (123)
..+++..++|+.|-||.|||||+||+|..+++|-+.+.... .....+ ....+++.++..+..+..
T Consensus 21 ~~p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~---~~stp~lda~~~~~~df~ 86 (420)
T KOG1871|consen 21 FEPVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK---EGSTPLLDASRPASSDFN 86 (420)
T ss_pred cCccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee---cccchhHHHHHHHHhhcc
Confidence 44556789999999999999999999999999999886655 111111 224567777777666665
No 33
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.25 E-value=4.1e-07 Score=64.16 Aligned_cols=20 Identities=70% Similarity=1.208 Sum_probs=19.5
Q ss_pred ccccCCchhhHHHHHHHHhC
Q psy10716 24 GLKNLGNTCYINSILQCLSN 43 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~ 43 (123)
||.|.|||||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH
Confidence 89999999999999999998
No 34
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.56 E-value=6.4e-05 Score=54.61 Aligned_cols=22 Identities=45% Similarity=0.937 Sum_probs=20.4
Q ss_pred ccccCCchhhHHHHHHHHhCCH
Q psy10716 24 GLKNLGNTCYINSILQCLSNTS 45 (123)
Q Consensus 24 GL~NlGNTCymNs~LQ~L~~~~ 45 (123)
||.|.||||++|++.|.|++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Q 22 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFSQQ 22 (228)
T ss_pred CccccCcchhHHHHHHHHHHHH
Confidence 8999999999999999999854
No 35
>KOG1864|consensus
Probab=97.50 E-value=7.4e-05 Score=60.90 Aligned_cols=36 Identities=36% Similarity=0.418 Sum_probs=30.5
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF 55 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~ 55 (123)
..... |+|.|||||.||++|++..+|+|+.-+....
T Consensus 29 ~~~~~-l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~ 64 (587)
T KOG1864|consen 29 LFKFR-LVNTGNSCYYNSTLQALSSCPPFVSRVEQLP 64 (587)
T ss_pred ccceE-EeecCCchhhhhHHHHHhhccHHHHHHHHHH
Confidence 33444 9999999999999999999999998776654
No 36
>KOG1275|consensus
Probab=97.32 E-value=0.00079 Score=56.86 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=63.2
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l 98 (123)
..-++||.-.+-.-|-|++||.|+.+|++|..+++.. |.. ..|++|++.-||..|..+...+-....|.+++
T Consensus 496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~---C~~-----e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf 567 (1118)
T KOG1275|consen 496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI---CTK-----EFCLLCELGFLFTMLDSSTGDPCQANNFLRAF 567 (1118)
T ss_pred cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc---cch-----hHHHHHHHHHHHHHHhhhcCCccchhHHHHHH
Confidence 3467788877888899999999999999999999874 222 37999999999999998888888889999988
Q ss_pred Hhh
Q psy10716 99 ELV 101 (123)
Q Consensus 99 ~~~ 101 (123)
+..
T Consensus 568 ~t~ 570 (1118)
T KOG1275|consen 568 RTN 570 (1118)
T ss_pred hhC
Confidence 643
No 37
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.80 E-value=0.001 Score=48.72 Aligned_cols=31 Identities=39% Similarity=0.622 Sum_probs=25.8
Q ss_pred cccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716 25 LKNLGNTCYINSILQCLSNTSPLREYFVTEF 55 (123)
Q Consensus 25 L~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~ 55 (123)
|.|.||.||+|+.+|+|.++......|....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~ 32 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKINTEFDNDD 32 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhhhhhcCCCc
Confidence 7899999999999999998877766665544
No 38
>KOG4598|consensus
Probab=96.43 E-value=0.002 Score=53.51 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=34.3
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF 55 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~ 55 (123)
+.+++||.|-..|||+|+.+|+|+.+|.++..++.-.
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~ 120 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE 120 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC
Confidence 6789999999999999999999999999999997644
No 39
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.93 E-value=0.016 Score=40.63 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=16.4
Q ss_pred CCccccccCCchhhHHHHHHHHhC
Q psy10716 20 PGLTGLKNLGNTCYINSILQCLSN 43 (123)
Q Consensus 20 ~~~~GL~NlGNTCymNs~LQ~L~~ 43 (123)
..+.|+-|.+|+|++||++|.+-.
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 356799999999999999998754
No 40
>KOG1864|consensus
Probab=90.13 E-value=0.3 Score=40.27 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCCccccccCCchhhHH--HHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCC--CccChHH
Q psy10716 18 VGPGLTGLKNLGNTCYIN--SILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS--RYFSPQK 93 (123)
Q Consensus 18 ~~~~~~GL~NlGNTCymN--s~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~--~~i~P~~ 93 (123)
.+...-|..|.+++|+-| ++.|.+.....+++..+... ...+..-.....+...+..+++..-.... ..+.|..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~ 305 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYL--TSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTR 305 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchh--hcccchhhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence 456788999999999999 99999998888886554433 00000001122344444444443332222 2789999
Q ss_pred HHHHHHhh-CCCCchhhccccccc
Q psy10716 94 FKVKHELV-GKFKVKVDKRLGKFK 116 (123)
Q Consensus 94 ~~~~l~~~-~~f~~~~~~~~~~~~ 116 (123)
+...+... ..|+..+++|++||+
T Consensus 306 ~~~~~~~~~~~f~~~~qQda~eF~ 329 (587)
T KOG1864|consen 306 FISDLIKENELFTNGMQQDAHEFL 329 (587)
T ss_pred hhhhhhhcCCccCchhhccHHHHh
Confidence 99998775 459999999999986
No 41
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=83.42 E-value=0.64 Score=34.09 Aligned_cols=20 Identities=30% Similarity=0.699 Sum_probs=18.5
Q ss_pred ccccCCc-hhhHHHHHHHHhC
Q psy10716 24 GLKNLGN-TCYINSILQCLSN 43 (123)
Q Consensus 24 GL~NlGN-TCymNs~LQ~L~~ 43 (123)
|..|.+| +||+-|+|=+++.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~ 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH
Confidence 7899999 9999999999987
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=52.06 E-value=26 Score=16.54 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCCccChHHHHHHHH
Q psy10716 74 FQLIFNMLWAGDSRYFSPQKFKVKHE 99 (123)
Q Consensus 74 l~~ll~~l~~~~~~~i~P~~~~~~l~ 99 (123)
+..+|..+-..+...|++.+|...++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 56778888777777999999998876
No 43
>KOG1868|consensus
Probab=48.75 E-value=5.5 Score=33.45 Aligned_cols=15 Identities=67% Similarity=1.296 Sum_probs=14.3
Q ss_pred cccCCchhhHHHHHH
Q psy10716 25 LKNLGNTCYINSILQ 39 (123)
Q Consensus 25 L~NlGNTCymNs~LQ 39 (123)
+-|+|||||||+++|
T Consensus 205 ~~~l~~~~~~~~~~~ 219 (653)
T KOG1868|consen 205 VPNLGNTCYMNAVLQ 219 (653)
T ss_pred cchhhchhcccchhh
Confidence 789999999999997
No 44
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=44.21 E-value=52 Score=23.05 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHc
Q psy10716 31 TCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83 (123)
Q Consensus 31 TCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~ 83 (123)
+=||++++|++...|.++.++.+.-.+-+.+. -=....+-..|.+....+|.
T Consensus 110 ~LfmRTviq~~~~~p~L~~FV~~iL~rLi~kq-vW~~~~lW~Gfi~C~~~~~p 161 (183)
T PF12295_consen 110 LLFMRTVIQALQKYPSLRSFVSNILSRLIQKQ-VWKNKKLWEGFIKCAKRLKP 161 (183)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHHHHHhhh
Confidence 35899999999999999999874332222221 00013455555555555554
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=43.19 E-value=40 Score=16.04 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCCccChHHHHHHHH
Q psy10716 74 FQLIFNMLWAGDSRYFSPQKFKVKHE 99 (123)
Q Consensus 74 l~~ll~~l~~~~~~~i~P~~~~~~l~ 99 (123)
+..+|+.+-..+...|+..+|...++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45677777777777899988888764
No 46
>PF14855 PapJ: Pilus-assembly fibrillin subunit, chaperone
Probab=37.30 E-value=13 Score=25.87 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=10.9
Q ss_pred CCchhhHHHHHHH
Q psy10716 28 LGNTCYINSILQC 40 (123)
Q Consensus 28 lGNTCymNs~LQ~ 40 (123)
+--+|+||+++|+
T Consensus 13 ll~S~smn~vlqA 25 (187)
T PF14855_consen 13 LLVSCSMNSVLQA 25 (187)
T ss_pred Hhhcchhhhhhhh
Confidence 3457999999997
No 47
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=36.56 E-value=20 Score=23.34 Aligned_cols=19 Identities=37% Similarity=0.739 Sum_probs=16.4
Q ss_pred CCccccccCCchhhHHHHH
Q psy10716 20 PGLTGLKNLGNTCYINSIL 38 (123)
Q Consensus 20 ~~~~GL~NlGNTCymNs~L 38 (123)
-...|..|.|.|+.+|+++
T Consensus 86 ~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 86 IGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3467999999999999886
No 48
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=35.94 E-value=79 Score=23.76 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=26.1
Q ss_pred ccCCchhhHHHHHHHHhCCHHHHHHHHhc
Q psy10716 26 KNLGNTCYINSILQCLSNTSPLREYFVTE 54 (123)
Q Consensus 26 ~NlGNTCymNs~LQ~L~~~~~f~~~ll~~ 54 (123)
+|.-|-|++-++|-+|.|+..+++..-+.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~ 34 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTEL 34 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68889999999999999999999988663
No 49
>KOG1867|consensus
Probab=33.39 E-value=11 Score=30.55 Aligned_cols=36 Identities=17% Similarity=-0.015 Sum_probs=28.0
Q ss_pred cccccCCCCccccccCCchhhHHHHHHHHhCCHHHH
Q psy10716 13 IIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLR 48 (123)
Q Consensus 13 ~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~ 48 (123)
+...+......|..+.++||+||+.+|.++.++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i 103 (492)
T KOG1867|consen 68 CLSNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFI 103 (492)
T ss_pred cccccccccccccccccccceeehhhheeccCCcEe
Confidence 333344567788999999999999999999887554
No 50
>KOG3120|consensus
Probab=27.84 E-value=2.3e+02 Score=21.04 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=38.9
Q ss_pred HHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCC-----------ccChHHH--HHHHHhh
Q psy10716 35 NSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR-----------YFSPQKF--KVKHELV 101 (123)
Q Consensus 35 Ns~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~-----------~i~P~~~--~~~l~~~ 101 (123)
|+|.|+|-.+..+.+..-..+ ++....-+.++|..+...... ++.|... ++.+...
T Consensus 31 ~wVv~~lp~~~l~~qL~~t~p-----------~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~ 99 (256)
T KOG3120|consen 31 NWVVDELPTTDLFNQLRDTYP-----------KGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKL 99 (256)
T ss_pred hHHHHhcccchhHHHHHHhcc-----------cchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHHHHHHHHhC
Confidence 678888866655555443332 234556666666666644322 3444321 2222233
Q ss_pred CCCCchhhcccccccccc
Q psy10716 102 GKFKVKVDKRLGKFKVKH 119 (123)
Q Consensus 102 ~~f~~~~~~~~~~~~~~~ 119 (123)
+-|.--.-+|+.-|+|++
T Consensus 100 g~~eliIVSDaNsfFIe~ 117 (256)
T KOG3120|consen 100 GCFELIIVSDANSFFIEE 117 (256)
T ss_pred CCceEEEEecCchhHHHH
Confidence 335555566677777664
No 51
>KOG1871|consensus
Probab=26.05 E-value=20 Score=28.34 Aligned_cols=43 Identities=21% Similarity=0.138 Sum_probs=34.3
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcc
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTA 61 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~ 61 (123)
...++|+.|.||-|..++..|...+..++...+-......+.+
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r 217 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPR 217 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCC
Confidence 3468999999999999999999999999888775554333333
No 52
>PF05379 Peptidase_C23: Carlavirus endopeptidase ; InterPro: IPR008041 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C23 (clan CA). The type example is Carlavirus (apple stem pitting virus) endopeptidase, this thought to play a role in the post-translational cleavage of the high molecular weight primary translation products of the virus.; GO: 0003968 RNA-directed RNA polymerase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=23.54 E-value=1.9e+02 Score=17.78 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=32.8
Q ss_pred CchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q psy10716 29 GNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVKHE 99 (123)
Q Consensus 29 GNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~ 99 (123)
-|.|.+.|+-|+|-..+.=.-.++... .-..++..+|.+. -++...|-..++
T Consensus 2 kN~Cvi~AiA~aL~R~~~dVl~Vl~~~-----------------~~~~~~~~l~~G~--Gl~l~~le~~f~ 53 (89)
T PF05379_consen 2 KNGCVIRAIAEALGRREQDVLAVLSRK-----------------CGEELLEELWSGE--GLDLEDLEELFE 53 (89)
T ss_pred CccchhHHHHHHhCCCHHHHHHHHHhc-----------------cCHHHHHHHHcCC--CcCHHHHHHHHH
Confidence 478999999999876554333333321 1134667778777 577777766654
No 53
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=22.66 E-value=43 Score=23.06 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=21.6
Q ss_pred CCCccccccCCchhhHHHHHHHHhC
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSN 43 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~ 43 (123)
.-...|..|.|-||++|+..+-.+.
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCc
Confidence 4467899999999999999987766
No 54
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=21.62 E-value=83 Score=12.95 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCCCccChHHHHHHH
Q psy10716 75 QLIFNMLWAGDSRYFSPQKFKVKH 98 (123)
Q Consensus 75 ~~ll~~l~~~~~~~i~P~~~~~~l 98 (123)
..++..+.......++..+|...+
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344555544444466666666654
Done!